HHsearch alignment for GI: 254780334 and conserved domain: pfam05362

>pfam05362 Lon_C Lon protease (S16) C-terminal proteolytic domain. The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
Probab=99.89  E-value=1.9e-22  Score=183.33  Aligned_cols=181  Identities=20%  Similarity=0.361  Sum_probs=147.9

Q ss_pred             CCCEEECCHHHHHHCCC-CCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----CCHHHHHHHHHHHHHHC
Q ss_conf             66311014045551147-66767348997304897411553310115778772477604----68666555589887511
Q gi|254780334|r  275 KGLQEVSDPSKIFLSDR-DSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG----WDSSRLAMILAVLEARC  349 (479)
Q Consensus       275 ~Gl~~v~~ps~~fl~~~-~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G----~d~~rl~~llAvl~k~~  349 (479)
T Consensus         5 ~~l~~~lG~~~~~~~~~~~~~~iG~vnGLa~t~~GG~il~IE~~~~~g---~g~l~lTG~lg~vmkES~~~A~s~~ks~~   81 (205)
T pfam05362         5 KNLEKYLGVPRFRYEEAEKEDQVGVVTGLAWTEVGGDLLTIEATIMPG---KGKLTLTGQLGDVMKESAQAALSYVRSRA   81 (205)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             899996599767775344689871999989927997889999999558---88400347557899999999999999999


Q ss_pred             ---CC---CCCCCHHHEECC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHC
Q ss_conf             ---11---024622210014-56111543258799999999724886887859998742473163407889999999976
Q gi|254780334|r  350 ---NI---KFGNHDVHLNIA-GGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKI  422 (479)
Q Consensus       350 ---~~---~~~~~Di~~nv~-gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~  422 (479)
T Consensus        82 ~~~~~~~~~~~~~diHih~p~Ga~pkDGPSAGiai~~Ai~S~l~~~pV~~~iAmTGEIsL~G~VlpIGGv~eKi~aA~ra  161 (205)
T pfam05362        82 EELGIDPDFFEKKDIHIHVPEGATPKDGPSAGVTMATALVSALTGIPVRKDVAMTGEITLRGRVLPIGGLKEKLLAAHRA  161 (205)
T ss_pred             HHHCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEEECCHHHHHHHHHHH
T ss_conf             98089932466145999724666677776303899999999994887678879960331356799848999999999993


Q ss_pred             CCCEEEECHHHHHHCC------CCCEEEEEECCHHHHHHHHH
Q ss_conf             9989997757653228------58808998383999999861
Q gi|254780334|r  423 GFLSGVFPESAKGECK------IGMLDRQYIKNLSDLVKKIT  458 (479)
Q Consensus       423 G~~~~iiP~~n~~e~~------~~~i~i~~v~~l~e~i~~l~  458 (479)
T Consensus       162 Gik~ViiP~~N~~dl~~ip~~i~~~i~i~~V~~i~evl~~al  203 (205)
T pfam05362       162 GIKTVIIPKENEKDLEEIPENVREGLEIIPVEHVDEVLKHAL  203 (205)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
T ss_conf             998899747776679983499976999999693999999974