HHsearch alignment for GI: 254780334 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.89 E-value=0.0046 Score=41.89 Aligned_cols=58 Identities=28% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCC---CEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 56656403133345566632378124888865985787---0899954987518899999999985
Q gi|254780334|r 53 GHSISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRG---SVILVGGDPGIGKSTLLMQTAASLA 115 (479)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~G---s~~Li~G~PGvGKSTL~Lqia~~~a 115 (479)
T Consensus 15 ~~~lRP~~l~e~vGQehl~-----~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~ 75 (234)
T pfam05496 15 ERSLRPRRLDEYIGQEKVK-----ENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 75 (234)
T ss_pred HHCCCCCCHHHCCCHHHHH-----HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8554989766606949999-----999999998874277766278878999988899999998408