HHsearch alignment for GI: 254780334 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.67 E-value=0.00065 Score=48.09 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=54.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHCCCCCCCHHEECCC---CHHHHHHHHHHCC
Q ss_conf 8999549875188999999999850398199998646--3047888875201577510000347---8899999997316
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--AIGQIRLRAQRLNTINSSVYIAIET---NVEDIIATLITNE 166 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--s~~Qi~~Ra~Rl~~~~~~i~~~~e~---~l~~il~~~i~~~ 166 (479)
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~-~~~~ 82 (231)
T pfam07015 4 ITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEH-AEGS 82 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHH-HHHC
T ss_conf 999617998659999999999999689959999689986889999987646888876522205660158999998-8657
Q ss_pred CCCEEEECHH
Q ss_conf 9828997216
Q gi|254780334|r 167 KPDLVIIDSI 176 (479)
Q Consensus 167 ~~~~vVIDSI 176 (479)
T Consensus 83 ~yD~VIIDtp 92 (231)
T pfam07015 83 GFDYALADTH 92 (231)
T ss_pred CCCEEEECCC
T ss_conf 9998998399