HHsearch alignment for GI: 254780334 and conserved domain: pfam07088
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=98.95 E-value=1.7e-08 Score=81.51 Aligned_cols=161 Identities=20% Similarity=0.292 Sum_probs=107.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-HHH---------CCCCCCCHH-------EE
Q ss_conf 7870899954987518899999999985039819999864630478888-752---------015775100-------00
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLR-AQR---------LNTINSSVY-------IA 150 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~R-a~R---------l~~~~~~i~-------~~ 150 (479)
T Consensus 8 ~~G~tLlIkG~PGTGKTlfTl~~Ld~l~~~-~~vlYvStRvdqd~V~e~yf~~~~~~~~t~ilD~~qD~f~l~~~~~vP~ 86 (484)
T pfam07088 8 DFGKTLLINGAPGTGKTLFTIRGLDVLRRH-HDVLYVSTRVDQETVHEMYFEGHGSLDKTAILDLLQDPFILPTDVDVPF 86 (484)
T ss_pred CCCCEEEEECCCCCCCEEEEEEHHHHHHCC-CCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHHCCCCCCCCC
T ss_conf 998479993699987238985737788516-9769996323778887740200255575665453026010631113665
Q ss_pred CCCCHHHHHHHHHHCC----CCCEEEECHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 3478899999997316----9828997216876654---20445563679999999999975307978999863036654
Q gi|254780334|r 151 IETNVEDIIATLITNE----KPDLVIIDSIQTLWSQ---TAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ 223 (479)
Q Consensus 151 ~e~~l~~il~~~i~~~----~~~~vVIDSIQtl~~~---~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~ 223 (479)
T Consensus 87 ~~l~l~sl~e~-vd~i~a~~er~~Ia~DSW~~i~eyLa~r~d~pe~----f~~~~n~lv~lar~~g~~Li~v~------E 155 (484)
T pfam07088 87 EKLNLDSLLEW-VDAINAAGERLTIAFDSWELIYEYLAERHDIPPD----ILTVTNQLVALARGSGARLVLVL------E 155 (484)
T ss_pred CCCCHHHHHHH-HHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHCCCEEEEEE------E
T ss_conf 42355579999-9876412457479983289999987776168466----75666567776652594599998------2
Q ss_pred CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEEC
Q ss_conf 3311457877530278515556665442156763202
Q gi|254780334|r 224 IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNR 260 (479)
Q Consensus 224 iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNR 260 (479)
T Consensus 156 ~~~~~~LeYivDGVVtL~vk~d~~GR~~R~L~LeKLR 192 (484)
T pfam07088 156 TAQNSRLEYIVDGVVTLNVKNDERGRTRRSLRLEKLR 192 (484)
T ss_pred CCCCCCCHHEEEEEEEEEEEECCCCCEEEEEEHHHHC
T ss_conf 3667751212303899988625678376776723422