HHsearch alignment for GI: 254780334 and conserved domain: pfam08423
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=99.93 E-value=3.6e-24 Score=195.89 Aligned_cols=210 Identities=23% Similarity=0.342 Sum_probs=163.2
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH------CCCCCEEEEECCCC--HHHHHHHH
Q ss_conf 55666323781248888659857870899954987518899999999985------03981999986463--04788887
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA------YKKHRITYVSGEEA--IGQIRLRA 137 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a------~~g~~vlYvS~EEs--~~Qi~~Ra 137 (479)
T Consensus 19 r~~~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qia 98 (261)
T pfam08423 19 RSEVIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERIVAIA 98 (261)
T ss_pred HCCCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 54873577898789987379866772999989988878999999999940709656999728999368886989999999
Q ss_pred HHCCCCC----CCHHEECCCCHHHHHH------HHHHCCCCCEEEECHHHHHHHHHHCCCCCCH----HHHHHHHHHHHH
Q ss_conf 5201577----5100003478899999------9973169828997216876654204455636----799999999999
Q gi|254780334|r 138 QRLNTIN----SSVYIAIETNVEDIIA------TLITNEKPDLVIIDSIQTLWSQTAESSPGTV----IQVRTSVQAMIQ 203 (479)
Q Consensus 138 ~Rl~~~~----~~i~~~~e~~l~~il~------~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv----sQvre~~~~L~~ 203 (479)
T Consensus 99 ~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~LvVvDSiaalfR~e~~g~-~~l~~R~~~L~~~l~~L~~ 177 (261)
T pfam08423 99 ERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFALLIVDSATALYRTDFSGR-GELAERQQHLAKFLRSLQR 177 (261)
T ss_pred HHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 982999789875331416899899999999999987317834999832400233300367-5289999999999999999
Q ss_pred HHHHCCCEEEEEEEECCC-C---C-------CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEE
Q ss_conf 753079789998630366-5---4-------3311457877530278515556665442156763202567651279985
Q gi|254780334|r 204 YAKKNGVAMVLVGHVTKE-G---Q-------IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEM 272 (479)
Q Consensus 204 ~AK~~~i~vilighvTK~-G---~-------iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m 272 (479)
T Consensus 178 lA~~~~~aVvvTNQV~~~~~~~~~f~~~~~~PagG~~~~h~~~~Rl~L~k----~~g~~R~~~l~ksp~~pe~~~-~F~I 252 (261)
T pfam08423 178 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGHIMAHASTTRLYLRK----GRGEQRVCKIYDSPCLPESEA-VFAI 252 (261)
T ss_pred HHHHCCCEEEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHCEEEEEEEE----CCCCEEEEEEEECCCCCCCEE-EEEE
T ss_conf 99980958999604798528863013787757505777734208999996----699847999987899998648-9999
Q ss_pred CCCCCEEEC
Q ss_conf 156631101
Q gi|254780334|r 273 SDKGLQEVS 281 (479)
Q Consensus 273 ~~~Gl~~v~ 281 (479)
T Consensus 253 t~~GI~D~~ 261 (261)
T pfam08423 253 SEGGIGDAK 261 (261)
T ss_pred ECCCCCCCC
T ss_conf 389712688