HHsearch alignment for GI: 254780334 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.65 E-value=2.7e-07 Score=72.81 Aligned_cols=144 Identities=22% Similarity=0.294 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALA-LARKLKP 79 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHCCC
T ss_conf 997899999997029999999998726689968998759989888987653000112210519999999999-9984499
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEE
Q ss_conf 289972168766542044556367999999999997530797899986303665433114578775302785
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ 240 (479)
T Consensus 80 ~viiiDei~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~vi~~~n~-~~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 80 DVLILDEITSLLDAEQEAL----LLLLEE--LRLLLLLKSEKNLTVILTTND-EKDLGPALLRRRFDRRIVL 144 (148)
T ss_pred CEEEEECCHHHCCCCCHHH----HHHHHH--HHHHCCCCCCCCEEEEEEECC-CCCCCHHHHCCCCCEEEEE
T ss_conf 8999827502147620799----999999--998517657899899995699-5224987707447879998