RPSBLAST alignment for GI: 254780334 and conserved domain: cd01121

>gnl|CDD|29987 cd01121, Sms, Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.. Length = 372

 Score =  488 bits (1259), Expect = e-138
 Identities = 203/377 (53%), Positives = 270/377 (71%), Gaps = 5/377 (1%)

Query: 8   YFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFMLSEESIE 67
           Y C  CG +  +W+GKC  C  WNT++E+     S     ++     S  +  LS+   E
Sbjct: 1   YVCSECGYVSPKWLGKCPECGEWNTLVEEIEPSSSSGSGGRSSGGSAS-KVIPLSDIEAE 59

Query: 68  EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127
           EE RI T I+ELDRV GGG V GSVIL+GGDPGIGKSTLL+Q AA LA +  ++ YVSGE
Sbjct: 60  EEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119

Query: 128 EAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESS 187
           E+  QI+LRA RL     ++Y+  ETN+EDI+A+ I   KPDLVIIDSIQT++S    S+
Sbjct: 120 ESPEQIKLRADRLGISTENLYLLAETNLEDILAS-IEELKPDLVIIDSIQTVYSSELTSA 178

Query: 188 PGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNT 247
           PG+V QVR     ++++AK+  + + +VGHVTKEG IAGP+V+EHMVD VLYFEG   + 
Sbjct: 179 PGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRHS- 237

Query: 248 QYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGT 307
             +YRILRSVKNRFG T+E+GVFEM + GL+EVS+PS++FLS+R+   PG+AV   +EG+
Sbjct: 238 --EYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGS 295

Query: 308 RALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYR 367
           R LLVE+Q+LV PTS   PRR  VG+D +RL+M+LAVLE R  +   + DV +N+AGG +
Sbjct: 296 RPLLVEVQALVSPTSYANPRRVAVGFDPNRLSMLLAVLEKRLGLPLADQDVFVNVAGGLK 355

Query: 368 ISEPAADVAVAAALISS 384
           I+EPAAD+AVA A++SS
Sbjct: 356 ITEPAADLAVALAIVSS 372