RPSBLAST alignment for GI: 254780334 and conserved domain: cd01394
>gnl|CDD|30004 cd01394, radB, RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.. Length = 218
Score = 58.0 bits (140), Expect = 5e-09
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 27/219 (12%)
Query: 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE----EAIGQI- 133
LD + GGG RG+V V G PG GK+ + +Q A A + ++ Y+ E E QI
Sbjct: 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIA 67
Query: 134 RLRAQRL--NTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191
R +R + I E +EK DLV++DS L+ T+
Sbjct: 68 GDRPERAASSIIVFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTI 127
Query: 192 ---IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ------IAGPRVIEHMVDAVLYFE- 241
++ + ++ A+K+ VA+V+ V + + G +EH +L E
Sbjct: 128 KNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGH-TLEHWSKVILRLEK 186
Query: 242 --GGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQ 278
GTR +L K+RF P F ++DKG++
Sbjct: 187 LRVGTR-----RAVLE--KHRFRPEGSSVYFRITDKGIE 218