BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780334|ref|YP_003064747.1| DNA repair protein RadA
[Candidatus Liberibacter asiaticus str. psy62]
(479 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/479 (100%), Positives = 479/479 (100%)
Query: 1 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFM 60
MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFM
Sbjct: 1 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFM 60
Query: 61 LSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHR 120
LSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHR
Sbjct: 61 LSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHR 120
Query: 121 ITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLW 180
ITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLW
Sbjct: 121 ITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLW 180
Query: 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240
SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF
Sbjct: 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240
Query: 241 EGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAV 300
EGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAV
Sbjct: 241 EGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAV 300
Query: 301 FAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHL 360
FAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHL
Sbjct: 301 FAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHL 360
Query: 361 NIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE 420
NIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE
Sbjct: 361 NIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE 420
Query: 421 KIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITALQKKDKKTVHKTRSLNSPWE 479
KIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITALQKKDKKTVHKTRSLNSPWE
Sbjct: 421 KIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITALQKKDKKTVHKTRSLNSPWE 479
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 43.1 bits (100), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 353 FGNHDVHLNIAGGYRISE-PAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGH 411
F ++H+++ G + P+A +A+A A++S + IP+ + GE++L G V +G
Sbjct: 675 FNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGG 734
Query: 412 MQQRLKEAEKIGFLSGVFPE 431
++++L A + G + PE
Sbjct: 735 LKEKLLAALRAGVTKVLIPE 754
>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 266
Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127
E I+ + +D + GG +R +IL+G P +GK+T + TA +A H + + S E
Sbjct: 121 ENPDIKWGLQSVDHLMGGVQLR-ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTIN 144
GGF +G ++ + G GK+TL + T A +V E A+ I A++L
Sbjct: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119
Query: 145 SSVYIAIETNVE---DIIATLITNEKPDLVIIDSIQTLWSQT------AESSPGTVIQVR 195
++ I+ E +I L+ + D+++IDS+ L + ES PG +Q R
Sbjct: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQAR 177
Query: 196 TSVQAM 201
QA+
Sbjct: 178 LMSQAL 183
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 32.3 bits (72), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA 115
+ T I LD+ GG R +I++ G PG+GK++L A ++A
Sbjct: 202 VSTGIQTLDKQMGG-LQRSDLIIIAGRPGMGKTSLATNIAYNVA 244
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 31.2 bits (69), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 162 LITNEKPDLVIIDSI-------QTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVL 214
L T +KPD+ ID + Q S S+ GT+ ++ ++ + A +
Sbjct: 68 LGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLF--------ARIG 119
Query: 215 VGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSD 274
+ H G + I M D +L FE GTR Y + V+NR G + + E+
Sbjct: 120 IPHSPTTGLPIESQTISQMADRLLSFEQGTRM----YLLAPIVRNRKGEYKK-ELAEILK 174
Query: 275 KGLQEV 280
KG Q V
Sbjct: 175 KGFQRV 180
>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 628
Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 284 SKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGM 325
S +F+ D T P +V + +EG R + E+ + ++ +LG+
Sbjct: 118 SALFIGDSMVT-PALSVLSAVEGVRYIAPELDNFIILIALGI 158
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE----EAIGQIRLRAQR 139
R VILV G G+GK+T++ + + ++ ++ +G+ AI Q+++ A R
Sbjct: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
>gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 430
Score = 24.3 bits (51), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 100 GIGKSTLLMQTAASLAYKKHRI 121
G+G ST+ +Q SL+ +HRI
Sbjct: 219 GMGSSTITIQGVTSLSGTRHRI 240
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 88 VRGSVILVGGDPGIGKS-TLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR 139
+ G +++ G PG GKS T+ AA++ + K + AI +R R ++
Sbjct: 417 INGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEK 469
>537021.9.peg.1064_1
Length = 238
Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 29 AWNTIIEDSSRKESDQRFSKTIK 51
AWN I++++RK D R + +K
Sbjct: 188 AWNRAIDETNRKLHDVRLAAMLK 210
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 88 VRGSVILVGGDPGIGKSTLL 107
+RG +++ G G GKSTL+
Sbjct: 41 LRGERVIIAGPSGSGKSTLI 60
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 93 ILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE 152
I + G P +GKSTL + K ++ V I + RL Q + IN ++ ++
Sbjct: 5 IAIVGAPNVGKSTLFNRLV------KKKMAVVGNHPGITRDRLYGQAI--INGVIFNIVD 56
Query: 153 T 153
T
Sbjct: 57 T 57
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,586
Number of Sequences: 1233
Number of extensions: 11237
Number of successful extensions: 63
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 24
length of query: 479
length of database: 328,796
effective HSP length: 77
effective length of query: 402
effective length of database: 233,855
effective search space: 94009710
effective search space used: 94009710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)