Query gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 156
No_of_seqs 111 out of 673
Neff 7.1
Searched_HMMs 33803
Date Wed Jun 1 12:08:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780335.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2f5v_A Pyranose 2-oxidase; fl 7.1 1.2E+02 0.0035 10.3 2.7 16 127-142 22-37 (47)
2 >2au5_A Conserved domain prote 5.0 1.7E+02 0.0051 9.4 0.9 13 59-71 54-66 (139)
3 >3bz1_X Photosystem II PSBX pr 4.5 2E+02 0.0058 9.1 4.2 28 99-126 14-41 (50)
4 >2vv5_A MSCS, small-conductanc 4.1 2.2E+02 0.0065 8.9 7.7 57 69-125 30-89 (110)
5 >2wdq_D Succinate dehydrogenas 3.7 2.5E+02 0.0074 8.6 8.6 44 34-77 60-103 (115)
6 >2k10_A Ranatuerin-2CSA; molec 3.4 2.8E+02 0.0083 8.3 2.4 17 16-32 3-19 (32)
7 >3b60_A Lipid A export ATP-bin 3.3 2.9E+02 0.0086 8.2 9.1 20 55-74 53-72 (116)
8 >2nys_A AGR_C_3712P; SSPB, str 3.3 2.9E+02 0.0086 8.2 2.2 11 22-32 15-25 (176)
9 >1p58_D Envelope protein M; fl 3.2 3E+02 0.0088 8.2 1.6 17 134-150 19-35 (75)
10 >2bw3_A Transposase; DNA recom 3.2 3E+02 0.009 8.1 0.4 23 133-155 120-142 (144)
No 1
>>2f5v_A Pyranose 2-oxidase; flavoprotein, rossmann-fold, PHBH-fold, GMC oxidoreductase, glutathion-reductase related fold, tetramer; HET: KBG FAD PG4; 1.41A {Peniophora SP} (A:351-397)
Probab=7.13 E-value=1.2e+02 Score=10.32 Aligned_cols=16 Identities=13% Similarity=0.626 Sum_probs=10.4
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 9452438999979999
Q gi|254780335|r 127 HESREPAWIQKSISKK 142 (156)
Q Consensus 127 ~~~~~~~~~~~S~~~~ 142 (156)
+.++.|+||.+-.-..
T Consensus 22 ~~nkhpdwwnekv~~h 37 (47)
T 2f5v_A 22 STNKHPDWWNEKVKNH 37 (47)
T ss_dssp TTCSSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 6433553001344345
No 2
>>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} (A:)
Probab=4.98 E-value=1.7e+02 Score=9.41 Aligned_cols=13 Identities=0% Similarity=-0.233 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9889999999999
Q gi|254780335|r 59 KSKQVAIIMTIIP 71 (156)
Q Consensus 59 ~~~~~~~i~a~~~ 71 (156)
+++|+....+.+-
T Consensus 54 ~P~WL~Es~~~cQ 66 (139)
T 2au5_A 54 DPNWLEEAAGGXQ 66 (139)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 8308999986767
No 3
>>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X* 3a0b_X* 3a0h_X* (X:)
Probab=4.53 E-value=2e+02 Score=9.13 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4899999999999999999999999742
Q gi|254780335|r 99 DKILGCAFGGVRGLFLLIITTSCWNLIV 126 (156)
Q Consensus 99 Dr~lG~~fG~~rg~li~~i~~~~~~~~~ 126 (156)
...-|++.|.+.|.++..+.+.+.....
T Consensus 14 pslkgffigllsgavvlgltfavliais 41 (50)
T 3bz1_X 14 PSLKGFFIGLLSGAVVLGLTFAVLIAIS 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0032457776220187756899999999
No 4
>>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} (A:1-110)
Probab=4.14 E-value=2.2e+02 Score=8.87 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998522--2344899999999-99999999999999974
Q gi|254780335|r 69 IIPLFLIILTVVSILLKIMSTPIRIRS--VLLDKILGCAFGG-VRGLFLLIITTSCWNLI 125 (156)
Q Consensus 69 ~~~iFi~~~i~~~~i~~~l~~~i~~~~--~~~Dr~lG~~fG~-~rg~li~~i~~~~~~~~ 125 (156)
-....+..+++...+.|..++.++... ...|+.....++- .|..+.+...+...+..
T Consensus 30 ~i~~~~ii~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~ 89 (110)
T 2vv5_A 30 NIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988899999999999999999997754687689999999999999999999999864
No 5
>>2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* (D:)
Probab=3.72 E-value=2.5e+02 Score=8.56 Aligned_cols=44 Identities=2% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999984039889999999999999999
Q gi|254780335|r 34 TNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLIIL 77 (156)
Q Consensus 34 ~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~~ 77 (156)
.-++.-....++-..-+...++||++++..+...-.+..+....
T Consensus 60 ~~~l~l~~~~~Ha~~G~~~iieDYv~~~~~r~~~~~~~~~~~~~ 103 (115)
T 2wdq_D 60 FTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVV 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999989999999837466999999999999999
No 6
>>2k10_A Ranatuerin-2CSA; molecular modelling, helix-turn-helix, disulfide bond, antimicrobial peptide, antimicrobial protein; NMR {Synthetic} (A:)
Probab=3.40 E-value=2.8e+02 Score=8.29 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999889999999
Q gi|254780335|r 16 ISSMLAMARGIFSEMIS 32 (156)
Q Consensus 16 ~~~~~G~~rG~i~e~~s 32 (156)
++.+.|..+|..|.+.+
T Consensus 3 lssfkgvakgvakdlag 19 (32)
T 2k10_A 3 LSSFKGVAKGVAKDLAG 19 (32)
T ss_dssp HHHHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 48887899998999999
No 7
>>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:1-116)
Probab=3.30 E-value=2.9e+02 Score=8.21 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=6.6
Q ss_pred HHCCCCHHHHHHHHHHHHHH
Q ss_conf 84039889999999999999
Q gi|254780335|r 55 SEFFKSKQVAIIMTIIPLFL 74 (156)
Q Consensus 55 ~~~~~~~~~~~i~a~~~iFi 74 (156)
++..+++....+...+..++
T Consensus 53 d~~~~~~~~~~l~~~~~~~~ 72 (116)
T 3b60_A 53 DDGFGKTDRSVLLWMPLVVI 72 (116)
T ss_dssp HSSTTSTTHHHHHHSHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHH
T ss_conf 98734787789999999999
No 8
>>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} (A:)
Probab=3.28 E-value=2.9e+02 Score=8.19 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 99889999999
Q gi|254780335|r 22 MARGIFSEMIS 32 (156)
Q Consensus 22 ~~rG~i~e~~s 32 (156)
.+||.||+++.
T Consensus 15 AlrgVVr~vL~ 25 (176)
T 2nys_A 15 ALRGVIRKVLG 25 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 9
>>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from TICK-borne encephalitis virus, membrane protein M, cryo-EM; 9.50A {Dengue virus 2 puerto rico} (D:)
Probab=3.24 E-value=3e+02 Score=8.16 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99997999999999999
Q gi|254780335|r 134 WIQKSISKKALDRMGTR 150 (156)
Q Consensus 134 ~~~~S~~~~~l~~~~~~ 150 (156)
|.+.+.....++...+|
T Consensus 19 Wl~~~~~~~hl~rvE~W 35 (75)
T 1p58_D 19 WMSSEGAWKHAQRIETW 35 (75)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 53671599999999999
No 10
>>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} (A:349-492)
Probab=3.17 E-value=3e+02 Score=8.10 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999799999999999999961
Q gi|254780335|r 133 AWIQKSISKKALDRMGTRLQSIV 155 (156)
Q Consensus 133 ~~~~~S~~~~~l~~~~~~l~~~l 155 (156)
.|-.|...+|.+..++..+..++
T Consensus 120 wW~~~~~~~P~Ls~lA~d~L~iP 142 (144)
T 2bw3_A 120 WWNLNSKKYPKLSKLALSLLSIP 142 (144)
T ss_dssp HHHHTTTTSHHHHHHHHHHHTSC
T ss_pred HHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99876712489999999995887
Done!