Query         gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 156
No_of_seqs    111 out of 673
Neff          7.1 
Searched_HMMs 23785
Date          Mon May 30 09:11:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780335.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2ksf_A Sensor protein KDPD; me  11.0      57  0.0024   11.2   1.3   23   10-32     38-60  (107)
  2 2yzv_A ADP-ribosylglycohydrola   7.2      83  0.0035   10.3   2.1   22  133-154   275-296 (303)
  3 2foz_A ADP-ribosylhydrolase li   6.6      89  0.0037   10.2   2.3   24  133-156   322-345 (347)
  4 2woe_A ADP-ribosyl-[dinitrogen   5.7   1E+02  0.0043    9.8   2.1   11  101-111   251-261 (299)
  5 3g9d_A Dinitrogenase reductase   5.4 1.1E+02  0.0046    9.7   2.1   18   95-112   240-257 (297)
  6 2au5_A Conserved domain protei   4.9 1.3E+02  0.0053    9.4   0.9   12   59-70     54-65  (139)
  7 1t5j_A Hypothetical protein MJ   4.7 1.3E+02  0.0055    9.2   2.1   22  133-154   279-300 (313)
  8 3bz1_X Photosystem II PSBX pro   4.5 1.4E+02  0.0058    9.1   4.2   28   99-126    14-41  (50)
  9 3hfw_A Protein ADP-ribosylargi   4.2 1.5E+02  0.0064    8.9   2.0   48   95-153   299-346 (357)
 10 2k10_A Ranatuerin-2CSA; molecu   4.0 1.6E+02  0.0067    8.8   2.4   18   15-32      2-19  (32)

No 1  
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=10.96  E-value=57  Score=11.20  Aligned_cols=23  Identities=9%  Similarity=0.268  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999889999999
Q gi|254780335|r   10 CFGFISISSMLAMARGIFSEMIS   32 (156)
Q Consensus        10 i~~ii~~~~~~G~~rG~i~e~~s   32 (156)
                      ++.++..+...|+.-|++-.+.|
T Consensus        38 ll~vl~~a~~~g~~~~~~as~ls   60 (107)
T 2ksf_A           38 LLGVVVVALFYGRWPSVVATVIN   60 (107)
T ss_dssp             HHHHHHHHHHHSSCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998349999999999


No 2  
>2yzv_A ADP-ribosylglycohydrolase; all alpha protein, structural genomics, NPPSFA; 1.60A {Thermus thermophilus HB8} PDB: 2cwc_A 2yzw_A
Probab=7.20  E-value=83  Score=10.34  Aligned_cols=22  Identities=9%  Similarity=0.394  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999979999999999999996
Q gi|254780335|r  133 AWIQKSISKKALDRMGTRLQSI  154 (156)
Q Consensus       133 ~~~~~S~~~~~l~~~~~~l~~~  154 (156)
                      +|.++=+-.+.++..++.+..+
T Consensus       275 ~w~~~l~~~~~i~~la~~L~~~  296 (303)
T 2yzv_A          275 RWLRALHLREEMEALALALYRM  296 (303)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCHHHHHHHHHHHHHH
T ss_conf             9999873879999999999997


No 3  
>2foz_A ADP-ribosylhydrolase like 2; all alpha-helical, metal binding; 1.60A {Homo sapiens} PDB: 2fp0_A 2g4k_A 2qty_A
Probab=6.57  E-value=89  Score=10.16  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             899997999999999999999619
Q gi|254780335|r  133 AWIQKSISKKALDRMGTRLQSIVQ  156 (156)
Q Consensus       133 ~~~~~S~~~~~l~~~~~~l~~~l~  156 (156)
                      +|.++=.-++.++..++.+.++.|
T Consensus       322 ~w~~~l~~~~~i~~la~~l~~~~~  345 (347)
T 2foz_A          322 SWQQSCEGYEETDILAQSLHRVFQ  345 (347)
T ss_dssp             HHHHTBTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             999988485999999999999983


No 4  
>2woe_A ADP-ribosyl-[dinitrogen reductase] glycohydrolase; dimanganese, nitrogen fixation, ADP-ribosylglycohydrolase, mono-ADP-ribosylhydrolase; HET: AR6 TLA; 1.90A {Rhodospirillum rubrum} PDB: 2woc_A 2wod_A*
Probab=5.74  E-value=1e+02  Score=9.83  Aligned_cols=11  Identities=27%  Similarity=0.383  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780335|r  101 ILGCAFGGVRG  111 (156)
Q Consensus       101 ~lG~~fG~~rg  111 (156)
                      .-|.+-|.+-|
T Consensus       251 t~aai~GallG  261 (299)
T 2woe_A          251 TTGALAGMLAG  261 (299)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             88999999999


No 5  
>3g9d_A Dinitrogenase reductase activacting glicohydrolase; DRAG, ADP-ribosylation, posttranslational modification; 2.50A {Azospirillum brasilense}
Probab=5.43  E-value=1.1e+02  Score=9.66  Aligned_cols=18  Identities=17%  Similarity=0.012  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             223448999999999999
Q gi|254780335|r   95 SVLLDKILGCAFGGVRGL  112 (156)
Q Consensus        95 ~~~~Dr~lG~~fG~~rg~  112 (156)
                      .|+=.-..|++-|.+-|.
T Consensus       240 ~GGDtdt~aai~GallGA  257 (297)
T 3g9d_A          240 QGGDADTTGAIAGMLAGA  257 (297)
T ss_dssp             TCSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
T ss_conf             559787899999999999


No 6  
>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} SCOP: a.244.1.1
Probab=4.89  E-value=1.3e+02  Score=9.36  Aligned_cols=12  Identities=0%  Similarity=-0.177  Sum_probs=7.0

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             988999999999
Q gi|254780335|r   59 KSKQVAIIMTII   70 (156)
Q Consensus        59 ~~~~~~~i~a~~   70 (156)
                      +++|+....+..
T Consensus        54 ~P~WL~Es~~~~   65 (139)
T 2au5_A           54 DPNWLEEAAGGM   65 (139)
T ss_dssp             CTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
T ss_conf             830899998676


No 7  
>1t5j_A Hypothetical protein MJ1187; putative hydrolase, structural genomics, PSI, protein structure initiative; 2.70A {Methanocaldococcus jannaschii} SCOP: a.209.1.1
Probab=4.70  E-value=1.3e+02  Score=9.24  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999979999999999999996
Q gi|254780335|r  133 AWIQKSISKKALDRMGTRLQSI  154 (156)
Q Consensus       133 ~~~~~S~~~~~l~~~~~~l~~~  154 (156)
                      +|.++=+-...++..++.+..+
T Consensus       279 ~w~~~l~~~~~i~~la~~L~~l  300 (313)
T 1t5j_A          279 EWIDGLKNKEVIFELAERLYHL  300 (313)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCHHHHHHHHHHHHHH
T ss_conf             9999852879999999999999


No 8  
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=4.53  E-value=1.4e+02  Score=9.13  Aligned_cols=28  Identities=21%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             4899999999999999999999999742
Q gi|254780335|r   99 DKILGCAFGGVRGLFLLIITTSCWNLIV  126 (156)
Q Consensus        99 Dr~lG~~fG~~rg~li~~i~~~~~~~~~  126 (156)
                      ...-|++.|.+.|.++..+.+.+.....
T Consensus        14 pslkgffigllsgavvlgltfavliais   41 (50)
T 3bz1_X           14 PSLKGFFIGLLSGAVVLGLTFAVLIAIS   41 (50)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0032457776220187756899999999


No 9  
>3hfw_A Protein ADP-ribosylarginine hydrolase; all alpha-helical, magnesium; HET: ADP; 1.92A {Homo sapiens}
Probab=4.16  E-value=1.5e+02  Score=8.88  Aligned_cols=48  Identities=13%  Similarity=0.012  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22344899999999999999999999999742945243899997999999999999999
Q gi|254780335|r   95 SVLLDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKALDRMGTRLQS  153 (156)
Q Consensus        95 ~~~~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~~~~S~~~~~l~~~~~~l~~  153 (156)
                      .|+=...-|++-|.+-|..      ...+.. |+    +|.++=.-...++..++.+-+
T Consensus       299 ~GGDtDT~aai~Gal~GA~------~G~~~I-P~----~w~~~l~~~~~i~~la~~L~~  346 (357)
T 3hfw_A          299 HGGDSDSTAAIAGCWWGVM------YGFKGV-SP----SNYEKLEYRNRLEETARALYS  346 (357)
T ss_dssp             SSSSHHHHHHHHHHHHHHH------HTTTTC-CG----GGTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH------HCHHCC-CH----HHHHHHHCHHHHHHHHHHHHH
T ss_conf             1897778999999999998------581008-99----999982476999999999999


No 10 
>2k10_A Ranatuerin-2CSA; molecular modelling, helix-turn-helix, disulfide bond, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=4.03  E-value=1.6e+02  Score=8.79  Aligned_cols=18  Identities=22%  Similarity=0.458  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999889999999
Q gi|254780335|r   15 SISSMLAMARGIFSEMIS   32 (156)
Q Consensus        15 ~~~~~~G~~rG~i~e~~s   32 (156)
                      ++|.+.|..+|..|.+.+
T Consensus         2 ilss~kg~akgvak~~a~   19 (32)
T 2k10_A            2 ILSSFKGVAKGVAKDLAG   19 (32)
T ss_dssp             HHHHHHHHGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             037777899898999999


Done!