Query gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 156 No_of_seqs 111 out of 673 Neff 7.1 Searched_HMMs 23785 Date Mon May 30 09:11:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780335.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ksf_A Sensor protein KDPD; me 11.0 57 0.0024 11.2 1.3 23 10-32 38-60 (107) 2 2yzv_A ADP-ribosylglycohydrola 7.2 83 0.0035 10.3 2.1 22 133-154 275-296 (303) 3 2foz_A ADP-ribosylhydrolase li 6.6 89 0.0037 10.2 2.3 24 133-156 322-345 (347) 4 2woe_A ADP-ribosyl-[dinitrogen 5.7 1E+02 0.0043 9.8 2.1 11 101-111 251-261 (299) 5 3g9d_A Dinitrogenase reductase 5.4 1.1E+02 0.0046 9.7 2.1 18 95-112 240-257 (297) 6 2au5_A Conserved domain protei 4.9 1.3E+02 0.0053 9.4 0.9 12 59-70 54-65 (139) 7 1t5j_A Hypothetical protein MJ 4.7 1.3E+02 0.0055 9.2 2.1 22 133-154 279-300 (313) 8 3bz1_X Photosystem II PSBX pro 4.5 1.4E+02 0.0058 9.1 4.2 28 99-126 14-41 (50) 9 3hfw_A Protein ADP-ribosylargi 4.2 1.5E+02 0.0064 8.9 2.0 48 95-153 299-346 (357) 10 2k10_A Ranatuerin-2CSA; molecu 4.0 1.6E+02 0.0067 8.8 2.4 18 15-32 2-19 (32) No 1 >2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli} Probab=10.96 E-value=57 Score=11.20 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999889999999 Q gi|254780335|r 10 CFGFISISSMLAMARGIFSEMIS 32 (156) Q Consensus 10 i~~ii~~~~~~G~~rG~i~e~~s 32 (156) ++.++..+...|+.-|++-.+.| T Consensus 38 ll~vl~~a~~~g~~~~~~as~ls 60 (107) T 2ksf_A 38 LLGVVVVALFYGRWPSVVATVIN 60 (107) T ss_dssp HHHHHHHHHHHSSCCCSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999998349999999999 No 2 >2yzv_A ADP-ribosylglycohydrolase; all alpha protein, structural genomics, NPPSFA; 1.60A {Thermus thermophilus HB8} PDB: 2cwc_A 2yzw_A Probab=7.20 E-value=83 Score=10.34 Aligned_cols=22 Identities=9% Similarity=0.394 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999979999999999999996 Q gi|254780335|r 133 AWIQKSISKKALDRMGTRLQSI 154 (156) Q Consensus 133 ~~~~~S~~~~~l~~~~~~l~~~ 154 (156) +|.++=+-.+.++..++.+..+ T Consensus 275 ~w~~~l~~~~~i~~la~~L~~~ 296 (303) T 2yzv_A 275 RWLRALHLREEMEALALALYRM 296 (303) T ss_dssp HHHHHCTTHHHHHHHHHHHHHH T ss_pred HHHHHHHCHHHHHHHHHHHHHH T ss_conf 9999873879999999999997 No 3 >2foz_A ADP-ribosylhydrolase like 2; all alpha-helical, metal binding; 1.60A {Homo sapiens} PDB: 2fp0_A 2g4k_A 2qty_A Probab=6.57 E-value=89 Score=10.16 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 899997999999999999999619 Q gi|254780335|r 133 AWIQKSISKKALDRMGTRLQSIVQ 156 (156) Q Consensus 133 ~~~~~S~~~~~l~~~~~~l~~~l~ 156 (156) +|.++=.-++.++..++.+.++.| T Consensus 322 ~w~~~l~~~~~i~~la~~l~~~~~ 345 (347) T 2foz_A 322 SWQQSCEGYEETDILAQSLHRVFQ 345 (347) T ss_dssp HHHHTBTTHHHHHHHHHHHHHHHT T ss_pred HHHHHHHCHHHHHHHHHHHHHHHH T ss_conf 999988485999999999999983 No 4 >2woe_A ADP-ribosyl-[dinitrogen reductase] glycohydrolase; dimanganese, nitrogen fixation, ADP-ribosylglycohydrolase, mono-ADP-ribosylhydrolase; HET: AR6 TLA; 1.90A {Rhodospirillum rubrum} PDB: 2woc_A 2wod_A* Probab=5.74 E-value=1e+02 Score=9.83 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=4.6 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780335|r 101 ILGCAFGGVRG 111 (156) Q Consensus 101 ~lG~~fG~~rg 111 (156) .-|.+-|.+-| T Consensus 251 t~aai~GallG 261 (299) T 2woe_A 251 TTGALAGMLAG 261 (299) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 88999999999 No 5 >3g9d_A Dinitrogenase reductase activacting glicohydrolase; DRAG, ADP-ribosylation, posttranslational modification; 2.50A {Azospirillum brasilense} Probab=5.43 E-value=1.1e+02 Score=9.66 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 223448999999999999 Q gi|254780335|r 95 SVLLDKILGCAFGGVRGL 112 (156) Q Consensus 95 ~~~~Dr~lG~~fG~~rg~ 112 (156) .|+=.-..|++-|.+-|. T Consensus 240 ~GGDtdt~aai~GallGA 257 (297) T 3g9d_A 240 QGGDADTTGAIAGMLAGA 257 (297) T ss_dssp TCSSHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 559787899999999999 No 6 >2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} SCOP: a.244.1.1 Probab=4.89 E-value=1.3e+02 Score=9.36 Aligned_cols=12 Identities=0% Similarity=-0.177 Sum_probs=7.0 Q ss_pred CCHHHHHHHHHH Q ss_conf 988999999999 Q gi|254780335|r 59 KSKQVAIIMTII 70 (156) Q Consensus 59 ~~~~~~~i~a~~ 70 (156) +++|+....+.. T Consensus 54 ~P~WL~Es~~~~ 65 (139) T 2au5_A 54 DPNWLEEAAGGM 65 (139) T ss_dssp CTTHHHHHHHHH T ss_pred CCHHHHHHHHHH T ss_conf 830899998676 No 7 >1t5j_A Hypothetical protein MJ1187; putative hydrolase, structural genomics, PSI, protein structure initiative; 2.70A {Methanocaldococcus jannaschii} SCOP: a.209.1.1 Probab=4.70 E-value=1.3e+02 Score=9.24 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999979999999999999996 Q gi|254780335|r 133 AWIQKSISKKALDRMGTRLQSI 154 (156) Q Consensus 133 ~~~~~S~~~~~l~~~~~~l~~~ 154 (156) +|.++=+-...++..++.+..+ T Consensus 279 ~w~~~l~~~~~i~~la~~L~~l 300 (313) T 1t5j_A 279 EWIDGLKNKEVIFELAERLYHL 300 (313) T ss_dssp HHHHTSSCHHHHHHHHHHHHHH T ss_pred HHHHHHHCHHHHHHHHHHHHHH T ss_conf 9999852879999999999999 No 8 >3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X* 3kzi_X* 3a0b_X* 3a0h_X* Probab=4.53 E-value=1.4e+02 Score=9.13 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 4899999999999999999999999742 Q gi|254780335|r 99 DKILGCAFGGVRGLFLLIITTSCWNLIV 126 (156) Q Consensus 99 Dr~lG~~fG~~rg~li~~i~~~~~~~~~ 126 (156) ...-|++.|.+.|.++..+.+.+..... T Consensus 14 pslkgffigllsgavvlgltfavliais 41 (50) T 3bz1_X 14 PSLKGFFIGLLSGAVVLGLTFAVLIAIS 41 (50) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0032457776220187756899999999 No 9 >3hfw_A Protein ADP-ribosylarginine hydrolase; all alpha-helical, magnesium; HET: ADP; 1.92A {Homo sapiens} Probab=4.16 E-value=1.5e+02 Score=8.88 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22344899999999999999999999999742945243899997999999999999999 Q gi|254780335|r 95 SVLLDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKALDRMGTRLQS 153 (156) Q Consensus 95 ~~~~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~~~~S~~~~~l~~~~~~l~~ 153 (156) .|+=...-|++-|.+-|.. ...+.. |+ +|.++=.-...++..++.+-+ T Consensus 299 ~GGDtDT~aai~Gal~GA~------~G~~~I-P~----~w~~~l~~~~~i~~la~~L~~ 346 (357) T 3hfw_A 299 HGGDSDSTAAIAGCWWGVM------YGFKGV-SP----SNYEKLEYRNRLEETARALYS 346 (357) T ss_dssp SSSSHHHHHHHHHHHHHHH------HTTTTC-CG----GGTTTCTTHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHH------HCHHCC-CH----HHHHHHHCHHHHHHHHHHHHH T ss_conf 1897778999999999998------581008-99----999982476999999999999 No 10 >2k10_A Ranatuerin-2CSA; molecular modelling, helix-turn-helix, disulfide bond, antimicrobial peptide, antimicrobial protein; NMR {Synthetic} Probab=4.03 E-value=1.6e+02 Score=8.79 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999889999999 Q gi|254780335|r 15 SISSMLAMARGIFSEMIS 32 (156) Q Consensus 15 ~~~~~~G~~rG~i~e~~s 32 (156) ++|.+.|..+|..|.+.+ T Consensus 2 ilss~kg~akgvak~~a~ 19 (32) T 2k10_A 2 ILSSFKGVAKGVAKDLAG 19 (32) T ss_dssp HHHHHHHHGGGHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 037777899898999999 Done!