Query gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 156
No_of_seqs 111 out of 673
Neff 7.1
Searched_HMMs 13730
Date Wed Jun 1 03:32:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780335.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t5ja_ a.209.1.1 (A:) Hypothe 6.1 55 0.004 10.0 2.1 22 133-154 277-298 (301)
2 d2au5a1 a.244.1.1 (A:1-132) Hy 5.3 66 0.0048 9.6 0.9 12 59-70 51-62 (132)
3 d1gxha_ a.28.2.1 (A:) ImmE8 (I 3.2 1.2E+02 0.0088 8.2 0.8 21 46-66 31-51 (85)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 3.0 1.3E+02 0.0095 8.0 9.5 55 69-125 8-63 (86)
5 d1nekd_ f.21.2.2 (D:) Succinat 3.0 1.3E+02 0.0097 7.9 8.8 29 40-68 64-92 (113)
6 d2axti1 f.23.37.1 (I:1-35) Pho 2.6 1.6E+02 0.011 7.5 3.1 14 70-83 11-24 (35)
7 d1kqfb2 f.23.22.1 (B:246-290) 2.5 1.7E+02 0.012 7.4 2.9 34 18-52 3-36 (45)
8 d1pb6a2 a.121.1.1 (A:86-211) H 2.0 2.1E+02 0.016 6.8 -0.1 40 21-61 62-101 (126)
9 d2nrha1 c.55.1.13 (A:1-82) Typ 1.9 2.3E+02 0.017 6.7 0.7 10 94-103 69-78 (82)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 1.9 2.3E+02 0.017 6.6 2.1 12 64-75 8-19 (32)
No 1
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.09 E-value=55 Score=10.01 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999979999999999999996
Q gi|254780335|r 133 AWIQKSISKKALDRMGTRLQSI 154 (156)
Q Consensus 133 ~~~~~S~~~~~l~~~~~~l~~~ 154 (156)
+|.+.=+-...++..++.+..+
T Consensus 277 ~w~~~l~~~~~i~~la~~l~~~ 298 (301)
T d1t5ja_ 277 EWIDGLKNKEVIFELAERLYHL 298 (301)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999720899999999999975
No 2
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.26 E-value=66 Score=9.57 Aligned_cols=12 Identities=0% Similarity=-0.177 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHH
Q ss_conf 988999999999
Q gi|254780335|r 59 KSKQVAIIMTII 70 (156)
Q Consensus 59 ~~~~~~~i~a~~ 70 (156)
+++|+....+..
T Consensus 51 ~P~WL~Es~~~~ 62 (132)
T d2au5a1 51 DPNWLEEAAGGM 62 (132)
T ss_dssp CTTHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 830899998776
No 3
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=3.23 E-value=1.2e+02 Score=8.15 Aligned_cols=21 Identities=10% Similarity=-0.132 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999840398899999
Q gi|254780335|r 46 LYPMLLERVSEFFKSKQVAII 66 (156)
Q Consensus 46 ~~~~l~~~l~~~~~~~~~~~i 66 (156)
..+.+-..+....+.|.-.++
T Consensus 31 ~~d~ll~hF~~iteHP~gsDL 51 (85)
T d1gxha_ 31 KQDDNLEHFISVTEHPSGSDL 51 (85)
T ss_dssp HHHHHHHHHHHTTCCTTTTHH
T ss_pred HHHHHHHHHHHHCCCCCCCCE
T ss_conf 889999999980479998862
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=1.3e+02 Score=7.97 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998522234489999-999999999999999999974
Q gi|254780335|r 69 IIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGC-AFGGVRGLFLLIITTSCWNLI 125 (156)
Q Consensus 69 ~~~iFi~~~i~~~~i~~~l~~~i~~~~~~~Dr~lG~-~fG~~rg~li~~i~~~~~~~~ 125 (156)
.+.++...+.+.+.+.+.+++..+.+ ..|+.+-- .--..|..+.+..++..++..
T Consensus 8 ~l~il~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~ 63 (86)
T d2vv5a3 8 ALAIIIVGLIIARMISNAVNRLMISR--KIDATVADFLSALVRYGIIAFTLIAALGRV 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998766--888589999999999999999999999990
No 5
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=2.98 E-value=1.3e+02 Score=7.92 Aligned_cols=29 Identities=3% Similarity=0.150 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999999999984039889999999
Q gi|254780335|r 40 AIMTRYLYPMLLERVSEFFKSKQVAIIMT 68 (156)
Q Consensus 40 ~~~a~~~~~~l~~~l~~~~~~~~~~~i~a 68 (156)
....++..--+...+++|++++..+...-
T Consensus 64 ~~~~~H~~lGl~~IieDYi~~~~~r~~~~ 92 (113)
T d1nekd_ 64 FSILIHAWIGMWQVLTDYVKPLALRLMLQ 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999707566899559746999999
No 6
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.59 E-value=1.6e+02 Score=7.52 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780335|r 70 IPLFLIILTVVSIL 83 (156)
Q Consensus 70 ~~iFi~~~i~~~~i 83 (156)
+++|.+.+.++.++
T Consensus 11 vV~fFv~lFiFGFL 24 (35)
T d2axti1 11 VVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 89999999998630
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.49 E-value=1.7e+02 Score=7.41 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988999999999999999999999999999
Q gi|254780335|r 18 SMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLE 52 (156)
Q Consensus 18 ~~~G~~rG~i~e~~sl~~wi~a~~~a~~~~~~l~~ 52 (156)
....+|+|..|-+. .++...++..+...|-...|
T Consensus 3 ~~V~lWKgv~Kpl~-~~~~~~~~~~~~fHYv~vGP 36 (45)
T d1kqfb2 3 TSVSLWKGALKPLA-AAGFIATFAGLIFHYIGIGP 36 (45)
T ss_dssp HHHHHHHTTHHHHH-HHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHEECC
T ss_conf 45677610178999-99999999998876311487
No 8
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=1.97 E-value=2.1e+02 Score=6.81 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 99988999999999999999999999999999998403988
Q gi|254780335|r 21 AMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSK 61 (156)
Q Consensus 21 G~~rG~i~e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~ 61 (156)
|.-+|.+++ ..-.-+..+++.+..+|-..++.+....+.+
T Consensus 62 g~~~G~~r~-vdp~~l~~~I~~~~~~y~~~~~~~~~l~g~~ 101 (126)
T d1pb6a2 62 WVKSGKLAP-IDPQHLIFMIWASTQHYADFAPQVEAVTGAT 101 (126)
T ss_dssp HHHTTSSCS-CCHHHHHHHHHHHHHHHHHTHHHHHHHHSCC
T ss_pred HHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 997798654-7799999999999999981899999874998
No 9
>d2nrha1 c.55.1.13 (A:1-82) Type III pantothenate kinase, CoaX {Campylobacter jejuni [TaxId: 197]}
Probab=1.90 E-value=2.3e+02 Score=6.66 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q ss_conf 2223448999
Q gi|254780335|r 94 RSVLLDKILG 103 (156)
Q Consensus 94 ~~~~~Dr~lG 103 (156)
.+.|+||...
T Consensus 69 ~GLGVDR~aA 78 (82)
T d2nrha1 69 QGLGIDRIAA 78 (82)
T ss_dssp BTCCHHHHHH
T ss_pred ECCCCCHHHH
T ss_conf 2358338878
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.85 E-value=2.3e+02 Score=6.58 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780335|r 64 AIIMTIIPLFLI 75 (156)
Q Consensus 64 ~~i~a~~~iFi~ 75 (156)
+..++|.++|+.
T Consensus 8 aa~lsfglifvg 19 (32)
T d2e74f1 8 AALLSFGLIFVG 19 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999970079888
Done!