RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780335|ref|YP_003064748.1| colicin V production protein
[Candidatus Liberibacter asiaticus str. psy62]
         (156 letters)



>gnl|CDD|182773 PRK10845, PRK10845, colicin V production protein; Provisional.
          Length = 162

 Score = 33.2 bits (76), Expect = 0.033
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 3   ITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQ 62
           + + D      I  S+++++ RG   E +SL  W  A  +  + Y  L    +  F+ + 
Sbjct: 1   MVWIDYAIIAVIGFSALVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTG-FEDEL 59

Query: 63  VAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVL--LDKILGCAFGGVRGLFLL 115
           V   + I  LF+  L V +I+  ++   +  ++ L   D++LG  FG +RG+ ++
Sbjct: 60  VRNGIAIAVLFIATLIVGAIVNYVIGQLVE-KTGLSGTDRVLGVCFGALRGVLIV 113


>gnl|CDD|183073 PRK11281, PRK11281, hypothetical protein; Provisional.
          Length = 1113

 Score = 27.2 bits (61), Expect = 1.9
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 37  IVAAIMTRYLYPMLLE-----RVSEFFKSKQVAIIMTIIPLFLIILTV 79
           I  A++   ++P+  E               V  ++TI P+ LI+L V
Sbjct: 659 IALALIAFLVWPLCRESWRDKESHTLRLV--VRTVLTIAPIALIVLVV 704


>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
          Length = 445

 Score = 26.7 bits (59), Expect = 2.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 37  IVAAIMTRYLYPMLLERVS-EFFKSKQVAIIMTIIPLFLIILTVVSILL 84
           IV  +MT +    +    S EF     V++I T++P    + T  ++LL
Sbjct: 329 IVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPY---LYTCAALLL 374


>gnl|CDD|182422 PRK10381, PRK10381, LPS O-antigen length regulator; Provisional.
          Length = 377

 Score = 26.2 bits (58), Expect = 3.5
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 50 LLERVSEFFKSKQVAIIMTIIPLFLIILTVVSILL 84
          L E +S  +K+K+   I+ I   F     ++S +L
Sbjct: 29 LFELISVLWKAKKT--IIAITFAFACAGLLISFIL 61


>gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 761

 Score = 25.6 bits (57), Expect = 5.4
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 62  QVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRGLFLLIIT 118
           Q  I    + L +++L  +   L +     R+R    D  +    G    L LL +T
Sbjct: 639 QFLIETLSVILLVLVLYRLPSFLDLSPPGQRLR----DAAIALGCGVGMTLLLLAVT 691


>gnl|CDD|185579 PTZ00370, PTZ00370, STEVOR; Provisional.
          Length = 296

 Score = 25.8 bits (57), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 69  IIPLFLIILTVVSILLKI 86
           I  L L+IL VV I+L I
Sbjct: 259 IAALVLLILAVVLIILYI 276


>gnl|CDD|150064 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1, FAD and
           cytokinin binding.  Members of this family adopt an
           alpha+beta sandwich structure with an antiparallel
           beta-sheet, in a ferredoxin-like fold. They are
           predominantly found in plant cytokinin dehydrogenase 1,
           where they are capable of binding both FAD and cytokinin
           substrates. The substrate displays a 'plug-into-socket'
           binding mode that seals the catalytic site and precisely
           positions the carbon atom undergoing oxidation in close
           contact with the reactive locus of the flavin.
          Length = 280

 Score = 25.8 bits (57), Expect = 5.6
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 13  FISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIP 71
           F+  S +L   RG+F  ++  TN     I+   +YPM         +SK    +  +IP
Sbjct: 146 FVPKSRILDFDRGVFKGILKNTN-NSGPIL---VYPMN--------RSKWDDRMSAVIP 192


>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
          Length = 623

 Score = 25.2 bits (55), Expect = 8.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 102 LGCAFGGVRGLFLLIITTSCW 122
           +G AFG       L+I   CW
Sbjct: 547 IGIAFGVSVAFLFLVICAMCW 567


>gnl|CDD|184839 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 243

 Score = 25.1 bits (55), Expect = 8.8
 Identities = 12/39 (30%), Positives = 14/39 (35%)

Query: 92  RIRSVLLDKILGCAFGGVRGLFLLIITTSCWNLIVHESR 130
               VL D + G    GV  L L   +T  W     E R
Sbjct: 42  AGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVR 80


>gnl|CDD|151212 pfam10726, DUF2518, Protein of function (DUF2518).  This family is
           conserved in Cyanobacteria. Several members are
           annotated as the protein Ycf51. The function is not
           known.
          Length = 145

 Score = 24.9 bits (55), Expect = 9.7
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 15/65 (23%)

Query: 62  QVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRGLFLLIITTSC 121
                +    L L +LTV++ + +     IR R V           GV   F L++T SC
Sbjct: 9   TATKWLGWATLGLAVLTVLAFIFR---WGIRFRLV-----------GVTS-FTLLLTASC 53

Query: 122 WNLIV 126
           W   +
Sbjct: 54  WAFSL 58


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.333    0.144    0.426 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,464,548
Number of extensions: 150016
Number of successful extensions: 695
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 75
Length of query: 156
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 71
Effective length of database: 4,157,793
Effective search space: 295203303
Effective search space used: 295203303
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.2 bits)