RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780335|ref|YP_003064748.1| colicin V production protein
[Candidatus Liberibacter asiaticus str. psy62]
         (156 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.8 bits (72), Expect = 0.076
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 78/182 (42%)

Query: 27  FSEMISLTNWIVAAIMTRY-LYPMLLE----RVSEFFKSKQVAIIMTIIPLFLIILTVVS 81
           F E+  L           Y  Y +L+       +E      +   +    +F   L ++ 
Sbjct: 170 FEELRDL-----------YQTYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGLNILE 217

Query: 82  ILLK---------IMSTPIRIRSV----LLD--------KILGCAFGGVRGLF------- 113
            L           ++S PI   S     ++         K+LG   G +R          
Sbjct: 218 WLENPSNTPDKDYLLSIPI---SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274

Query: 114 ------LLIITTSCWNLIVHESREPAWIQKSISKKALD---RMGTRLQ----------SI 154
                 + I  T  W     ES           +KA+     +G R            SI
Sbjct: 275 QGLVTAVAIAETDSW-----ESFF------VSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323

Query: 155 VQ 156
           ++
Sbjct: 324 LE 325



 Score = 25.7 bits (56), Expect = 4.4
 Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 79/159 (49%)

Query: 47  YPMLLERVSEFFKSKQVAIIMTIIPLFLI---ILTVVSILLKIMSTPIR-----IR---- 94
           +  +L      F++            +L    I  + + LL+   T +      I+    
Sbjct: 80  FDQVLNLCLTEFENC-----------YLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128

Query: 95  --------------SVLLD-------KILGCA-FGG----------VRGLF-----LL-- 115
                         S L         +++  A FGG          +R L+     L+  
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLV--AIFGGQGNTDDYFEELRDLYQTYHVLVGD 186

Query: 116 IITTSCWNLIVHESREP--------------AWIQKSIS 140
           +I  S    +    R                 W++   +
Sbjct: 187 LIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224


>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP:
           c.1.12.7
          Length = 538

 Score = 28.7 bits (64), Expect = 0.60
 Identities = 6/41 (14%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 8   IFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYP 48
            F +G +  + +  MA+ +  + + ++ W  ++  +    P
Sbjct: 73  SFTYGCLDPTMVTQMAKYL--DTVYVSGWQSSSTASSTDEP 111


>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol,
           hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae}
           SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
          Length = 357

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 5/29 (17%), Positives = 15/29 (51%)

Query: 33  LTNWIVAAIMTRYLYPMLLERVSEFFKSK 61
            T  ++A+   R L+ +++    +  +S+
Sbjct: 327 ATKGVIASSGPRELHDLVVSTSCDVIQSR 355


>2au5_A Conserved domain protein; structural genomics, PSI, protein
          structure initiative, midwest center for structural
          genomics, MCSG; 2.10A {Enterococcus faecalis V583}
          SCOP: a.244.1.1
          Length = 139

 Score = 25.4 bits (55), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 16 ISSMLAMARGIFSEMISLTNWIVAAIM 42
          +S+MLA  RG F+  IS  + IV A M
Sbjct: 25 LSNMLAFTRGHFTGDISHFSPIVLAEM 51


>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
           disease mutation, DNA replication, DNA-binding,
           DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
           sapiens}
          Length = 1172

 Score = 24.9 bits (54), Expect = 7.9
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 131 EPAWIQKSISKKALDRMGTRLQSIVQ 156
           EP W+  S ++   DR+G+ L+++VQ
Sbjct: 789 EPTWLTASNARP--DRVGSELKAMVQ 812


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.144    0.426 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,281,113
Number of extensions: 53882
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 27
Length of query: 156
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 71
Effective length of database: 3,632,490
Effective search space: 257906790
Effective search space used: 257906790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.2 bits)