RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780335|ref|YP_003064748.1| colicin V production protein
[Candidatus Liberibacter asiaticus str. psy62]
         (156 letters)



>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP
           phosphatase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 354

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 5/29 (17%), Positives = 15/29 (51%)

Query: 33  LTNWIVAAIMTRYLYPMLLERVSEFFKSK 61
            T  ++A+   R L+ +++    +  +S+
Sbjct: 326 ATKGVIASSGPRELHDLVVSTSCDVIQSR 354


>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 132

 Score = 25.0 bits (54), Expect = 3.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 16 ISSMLAMARGIFSEMISLTNWIVAAIM 42
          +S+MLA  RG F+  IS  + IV A M
Sbjct: 22 LSNMLAFTRGHFTGDISHFSPIVLAEM 48


>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus
          type 2 [TaxId: 10515]}
          Length = 646

 Score = 24.7 bits (54), Expect = 4.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1  MGITYFDI 8
          M  TYFDI
Sbjct: 91 MASTYFDI 98


>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
           PAPL {Vaccinia virus [TaxId: 10245]}
          Length = 468

 Score = 23.6 bits (51), Expect = 8.4
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 52  ERVSEFFKSKQ-----VAIIMTIIPLFLIILTVVSILLKIMSTP 90
           +R+  +F SKQ     +  + TII L  +++T  + +L +++  
Sbjct: 65  DRILSYF-SKQTQTYNIGKLFTIIELQSVLVTTYTDILGVLTIK 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.144    0.426 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 558,340
Number of extensions: 23419
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 16
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (22.9 bits)