RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus str. psy62] (156 letters) >d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 354 Score = 26.6 bits (57), Expect = 1.1 Identities = 5/29 (17%), Positives = 15/29 (51%) Query: 33 LTNWIVAAIMTRYLYPMLLERVSEFFKSK 61 T ++A+ R L+ +++ + +S+ Sbjct: 326 ATKGVIASSGPRELHDLVVSTSCDVIQSR 354 >d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]} Length = 132 Score = 25.0 bits (54), Expect = 3.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 16 ISSMLAMARGIFSEMISLTNWIVAAIM 42 +S+MLA RG F+ IS + IV A M Sbjct: 22 LSNMLAFTRGHFTGDISHFSPIVLAEM 48 >d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]} Length = 646 Score = 24.7 bits (54), Expect = 4.0 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 MGITYFDI 8 M TYFDI Sbjct: 91 MASTYFDI 98 >d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit, PAPL {Vaccinia virus [TaxId: 10245]} Length = 468 Score = 23.6 bits (51), Expect = 8.4 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%) Query: 52 ERVSEFFKSKQ-----VAIIMTIIPLFLIILTVVSILLKIMSTP 90 +R+ +F SKQ + + TII L +++T + +L +++ Sbjct: 65 DRILSYF-SKQTQTYNIGKLFTIIELQSVLVTTYTDILGVLTIK 107 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.333 0.144 0.426 Gapped Lambda K H 0.267 0.0630 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 558,340 Number of extensions: 23419 Number of successful extensions: 102 Number of sequences better than 10.0: 1 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 16 Length of query: 156 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 78 Effective length of database: 1,336,656 Effective search space: 104259168 Effective search space used: 104259168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 49 (22.9 bits)