BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780335|ref|YP_003064748.1| colicin V production protein
[Candidatus Liberibacter asiaticus str. psy62]
         (156 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 156

 Score =  310 bits (795), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MGITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKS 60
           MGITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKS
Sbjct: 1   MGITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKS 60

Query: 61  KQVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRGLFLLIITTS 120
           KQVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRGLFLLIITTS
Sbjct: 61  KQVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRGLFLLIITTS 120

Query: 121 CWNLIVHESREPAWIQKSISKKALDRMGTRLQSIVQ 156
           CWNLIVHESREPAWIQKSISKKALDRMGTRLQSIVQ
Sbjct: 121 CWNLIVHESREPAWIQKSISKKALDRMGTRLQSIVQ 156


>gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 129

 Score = 22.3 bits (46), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 111 GLFLLIITTSCWNLIVHESRE 131
           GL ++I+TTS   +  H++RE
Sbjct: 97  GLGIMIVTTSKGVMAGHQARE 117


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 21.9 bits (45), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 108 GVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKAL 144
           G R +F     T+C +     SR P WI K  SK+A+
Sbjct: 152 GQRTIFDKGTYTACSSCSKPNSRPPFWIVK--SKRAI 186


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 21.6 bits (44), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 119 TSCWNLIVHESREPAWIQKS 138
           +S WN+ V ES    W +KS
Sbjct: 622 SSWWNIEVPESETYMWDEKS 641


>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 581

 Score = 21.2 bits (43), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 66  IMTIIPLFLIILTVVSILLKIMSTP 90
           I+  IP+F  I  V+SI L++   P
Sbjct: 433 ILLQIPVFFAIYKVISISLEMRHAP 457


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.144    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,086
Number of Sequences: 1233
Number of extensions: 2877
Number of successful extensions: 15
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 11
length of query: 156
length of database: 328,796
effective HSP length: 67
effective length of query: 89
effective length of database: 246,185
effective search space: 21910465
effective search space used: 21910465
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 35 (18.1 bits)