HHsearch alignment for GI: 254780336 and conserved domain: COG2065
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism].
Probab=96.58 E-value=0.029 Score=35.99 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHC------CCCEEHHEECCCCCCCEEEECCHHHH
Q ss_conf 003728999999999999874865677-20120012047799999981------99600100117653210110644677
Q gi|254780336|r 268 IISGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKES------GIPFEQGIIRNHYVGRTFIEPSHHIR 340 (488)
Q Consensus 268 ~~~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~------gip~~~~lvkn~y~gRtFI~p~~~~R 340 (488)
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lD-------It~yRDDl~~~ 78 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELD-------ITLYRDDLTQK 78 (179)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE-------EEEEECHHHHC
T ss_conf 07999999999999999999707998559996742878999999999988737788703687-------67851413315
Q ss_pred H-HHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECC------CCCCCCCCCCEECCC-HH
Q ss_conf 7-6532013432455338932897403533333888999998539-9789999658------980588656500589-78
Q gi|254780336|r 341 A-FGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVAS------PMVLYPDFYGIDIPD-PT 411 (488)
Q Consensus 341 ~-~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~s------Ppi~~pc~yGid~p~-~~ 411 (488)
T Consensus 79 ~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGHRELP-IRaDyVGKniPTs~~ 157 (179)
T COG2065 79 GPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGHRELP-IRADYVGKNIPTSRS 157 (179)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-CCCCCCCCCCCCCCC
T ss_conf 7667765676475244687899982011147249999999986498535899999838875478-663514476888876
Q ss_pred HHHHCC
Q ss_conf 885466
Q gi|254780336|r 412 ALLANK 417 (488)
Q Consensus 412 eLia~~ 417 (488)
T Consensus 158 E~V~V~ 163 (179)
T COG2065 158 EEVKVR 163 (179)
T ss_pred CEEEEE
T ss_conf 169999