HHsearch alignment for GI: 254780336 and conserved domain: TIGR00201

>TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=97.24  E-value=0.00023  Score=51.02  Aligned_cols=112  Identities=21%  Similarity=0.346  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHH-----CCC-------CCCCCCCCCCC-----------HHHHHHHHHHHCCCCE-EHHEECCCC-CCCE
Q ss_conf             999999999874-----865-------67720120012-----------0477999999819960-010011765-3210
Q gi|254780336|r  277 SRRNMGKNLAKE-----SPV-------IADIVVPIPDG-----------GVPAAIGYAKESGIPF-EQGIIRNHY-VGRT  331 (488)
Q Consensus       277 ~R~~lG~~La~~-----~~~-------~~DiV~~VPds-----------g~~aA~gya~~~gip~-~~~lvkn~y-~gRt  331 (488)
T Consensus        63 ~~~~I~~~L~~~l~~~~~~~~~T~~L~lp~~iV~vPl~~~R~~~rGFnq~~lL~~~LsR~~~~~n~~~~~~R~~~T~~Q~  142 (207)
T TIGR00201        63 AQAEIARALASLLALTVSKAKRTTQLDLPDQIVPVPLSKKRKWRRGFNQADLLAQLLSRWLDIFNYSNIVSRLKNTKTQK  142 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHH
T ss_conf             03689999889999998603100023588604405776353211577778998752153000234200343200203466


Q ss_pred             EEECCHHHHHHHHH--HCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH-CCCCEEEE
Q ss_conf             11064467776532--0134324553389328974035333338889999985-39978999
Q gi|254780336|r  332 FIEPSHHIRAFGVK--LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRS-AGASEVHL  390 (488)
Q Consensus       332 FI~p~~~~R~~~v~--~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~-aGa~evh~  390 (488)
T Consensus       143 ~~~~--~~R~~nl~n~f~l~~~~~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~  202 (207)
T TIGR00201       143 LLKA--KLRKKNLENAFKLKSKKKEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQV  202 (207)
T ss_pred             HHHH--HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             6658--77777755666542032468875589970451012368999999986457001144