HHsearch alignment for GI: 254780336 and conserved domain: TIGR00201
>TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=97.24 E-value=0.00023 Score=51.02 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHH-----CCC-------CCCCCCCCCCC-----------HHHHHHHHHHHCCCCE-EHHEECCCC-CCCE
Q ss_conf 999999999874-----865-------67720120012-----------0477999999819960-010011765-3210
Q gi|254780336|r 277 SRRNMGKNLAKE-----SPV-------IADIVVPIPDG-----------GVPAAIGYAKESGIPF-EQGIIRNHY-VGRT 331 (488)
Q Consensus 277 ~R~~lG~~La~~-----~~~-------~~DiV~~VPds-----------g~~aA~gya~~~gip~-~~~lvkn~y-~gRt 331 (488)
T Consensus 63 ~~~~I~~~L~~~l~~~~~~~~~T~~L~lp~~iV~vPl~~~R~~~rGFnq~~lL~~~LsR~~~~~n~~~~~~R~~~T~~Q~ 142 (207)
T TIGR00201 63 AQAEIARALASLLALTVSKAKRTTQLDLPDQIVPVPLSKKRKWRRGFNQADLLAQLLSRWLDIFNYSNIVSRLKNTKTQK 142 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHH
T ss_conf 03689999889999998603100023588604405776353211577778998752153000234200343200203466
Q ss_pred EEECCHHHHHHHHH--HCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH-CCCCEEEE
Q ss_conf 11064467776532--0134324553389328974035333338889999985-39978999
Q gi|254780336|r 332 FIEPSHHIRAFGVK--LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRS-AGASEVHL 390 (488)
Q Consensus 332 FI~p~~~~R~~~v~--~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~-aGa~evh~ 390 (488)
T Consensus 143 ~~~~--~~R~~nl~n~f~l~~~~~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~ 202 (207)
T TIGR00201 143 LLKA--KLRKKNLENAFKLKSKKKEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQV 202 (207)
T ss_pred HHHH--HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 6658--77777755666542032468875589970451012368999999986457001144