HHsearch alignment for GI: 254780336 and conserved domain: TIGR03104
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=8.2e-37 Score=282.07 Aligned_cols=245 Identities=26% Similarity=0.309 Sum_probs=178.3
Q ss_pred CCEEEEEECCCC---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 565999981853---36899999987731588702799997996999804871676315044432068767898751222
Q gi|254780336|r 14 KCGVFGILGHPD---AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 14 eCGI~Gi~~~~~---~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
T Consensus 1 MCGI~G~~~~~~~~~~~~~l~~m~~~l~HRGPD~~g~~~----------------------------~~~~~lgh~RLsI 52 (589)
T TIGR03104 1 MCGICGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHA----------------------------QGPVALGHRRLKI 52 (589)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEE----------------------------CCCEEEEEECCEE
T ss_conf 982799996699877999999999546285978778185----------------------------3998999701114
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 68986002786787469971999996550878999999986498242343078988989873025670568999986530
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG 170 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~G 170 (488)
T Consensus 53 iDl~~~g-~QP~~--~~~~~~~ivfNGEIYN~~eLr~eL~~~g~~f~t~sDtEvll~~y~~--------~G~~~l~~l~G 121 (589)
T TIGR03104 53 IDLSEAS-QQPMV--DAELGLALVFNGCIYNYRELRAELEGLGYRFFSDGDTEVILKAYHA--------WGRDCVSRFNG 121 (589)
T ss_pred ECCCCCC-CCCCC--CCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH--------HHHHHHHHHCC
T ss_conf 2788568-99966--6999989999847645999999998679972899809999999999--------97999997327
Q ss_pred CEEEEEEEC--CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCC-------------------C--------CCEEE
Q ss_conf 439999639--979999825665415998269569998612001047-------------------8--------74123
Q gi|254780336|r 171 AYAMLALTR--TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEIT-------------------G--------AKYIR 221 (488)
Q Consensus 171 ayslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i-------------------g--------~~~ir 221 (488)
T Consensus 122 mFAfai~D~~~~~l~laRDr~GiKPLYY~~~~~~~~FaSEikall~~~~~~~~~~~~~l~~yl~~~~~~~~~~T~f~~I~ 201 (589)
T TIGR03104 122 MFAFAIWERDSGRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVR 201 (589)
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCEEEEEECCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 58999980788889998557778405999609879993353899847676541136789998522566589854035869
Q ss_pred ECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHH--HHHCCCCCC-----
Q ss_conf 3178707999408984799875307765664200000100247430003728999999999999--874865677-----
Q gi|254780336|r 222 DVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNL--AKESPVIAD----- 294 (488)
Q Consensus 222 dv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~L--a~~~~~~~D----- 294 (488)
T Consensus 202 ~l~pG~~l~~~--~~~~~~~~~yw~~~~~~--------------~~~~~~~~~~~~~~~l~~~l~~sV~~rl~sDvpvg~ 265 (589)
T TIGR03104 202 KLPPATWMTVE--PDGSRTQRSYWSLDAGR--------------PADDAARTEADWQDAILEALRLAVKRRLVADVPVGV 265 (589)
T ss_pred EECCCEEEEEE--CCCCEEEEEECCCCCCC--------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 95894499996--79957875415765576--------------744345898999999999999999999744676300
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 20120012047799999981
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKES 314 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~ 314 (488)
T Consensus 266 ~LSGGlDSS~i~a~~-~~~~ 284 (589)
T TIGR03104 266 LLSGGLDSSLIVGLL-AEAG 284 (589)
T ss_pred ECCCCCCHHHHHHHH-HHHC
T ss_conf 017875438999999-9956