HHsearch alignment for GI: 254780336 and conserved domain: TIGR03442
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.79 E-value=3.9e-17 Score=141.91 Aligned_cols=208 Identities=19% Similarity=0.195 Sum_probs=141.8
Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHH--HC------C----CCCEEEEEEEECC---EEEEEECCCCH-HH-HCCCHHHHH
Q ss_conf 565999981853-368999999877--31------5----8870279999799---69998048716-76-315044432
Q gi|254780336|r 14 KCGVFGILGHPD-AATLTAIGLHAL--QH------R----GQEATGIISFNGN---KFHSERHLGLV-GD-HFTKPETLS 75 (488)
Q Consensus 14 eCGI~Gi~~~~~-~~~~~~~gL~~L--QH------R----GqdsaGIa~~d~~---~i~~~K~~GlV-~d-vf~~~~~l~ 75 (488)
T Consensus 1 MCR~l~y~G~p~~l~~ll~~p~hSL~~QS~~~~~~~~~~~N~DGfGvgWy~~~~~~~P~~yr~~~PaW~D~nl~--~la~ 78 (251)
T TIGR03442 1 MCRHLAYLGAPVSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFA--SLAR 78 (251)
T ss_pred CCCCCEECCCCEEHHHHHCCCCCHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHH--HHHH
T ss_conf 96011651696688885528861388866275554588556886179887688888870450686354681199--9986
Q ss_pred HCCCCEEEEEEECCCCCC-CCCCCCCCEEEECCCCEEEEEEEEEECCHHH-HHHHHHHCC-----CCCCCCCCHHHHHHH
Q ss_conf 068767898751222689-8600278678746997199999655087899-999998649-----824234307898898
Q gi|254780336|r 76 LLPGNMAIGHVRYSTTGD-QIIRNVQPLFADLQVGGIAIAHNGNFTNGLT-LRKKLISSG-----AIFQSTSDTEVILHL 148 (488)
Q Consensus 76 ~l~G~~~IGHvRYsT~G~-~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~e-Lr~~L~~~g-----~~f~s~sDTEvI~~L 148 (488)
T Consensus 79 ~v~S~~~lAHVR~AT~G~~v~~~NcHPF~----~g~~lF~HNG~I~~f~~~l~r~l~~~l~~~~~~~i~G~TDSE~~Fal 154 (251)
T TIGR03442 79 YVESGCVLAAVRSATVGMAIDESACAPFS----DGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFAL 154 (251)
T ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCE----ECCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 41366589886505688765523478833----57789994772377458889999853798787441488758999999
Q ss_pred HHHHCCCC----CCHHHHHHHHHHH--C-----CEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCC
Q ss_conf 98730256----7056899998653--0-----43999963997999982566541599826956999861200104787
Q gi|254780336|r 149 IARSQKNG----SCDRFIDSLRHVQ--G-----AYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGA 217 (488)
Q Consensus 149 i~~~~~~~----~~e~i~~~l~~l~--G-----ayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~ 217 (488)
T Consensus 155 ~l~~l~~~~~~al~~ai~~~~~~~~~~~~~~~~~lN~~ltDG~~l~AtR--~~-~sLy~~~~~~~vvVASEPl--d~--~ 227 (251)
T TIGR03442 155 LLNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDGSRLVATR--WA-DTLYWLKDPEGVIVASEPY--DD--D 227 (251)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEE--EC-CCEEEEECCCEEEEEECCC--CC--C
T ss_conf 9998876486379999999999999864286706899996499999999--45-8638993699799997888--99--9
Q ss_pred CEEEECCCCEEEEEEEC
Q ss_conf 41233178707999408
Q gi|254780336|r 218 KYIRDVENGETIVCELQ 234 (488)
Q Consensus 218 ~~irdv~PGEiivi~~~ 234 (488)
T Consensus 228 ~~W~~vP~~s~l~v~~~ 244 (251)
T TIGR03442 228 PGWQDVPDRHLLSVSED 244 (251)
T ss_pred CCCEECCCCCEEEEECC
T ss_conf 79649899968999789