HHsearch alignment for GI: 254780336 and conserved domain: cd00352

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=100.00  E-value=4.4e-42  Score=319.58  Aligned_cols=212  Identities=38%  Similarity=0.586  Sum_probs=188.4

Q ss_pred             CEEEEEECCCCHHHH----HHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf             659999818533689----9999987731588702799997996999804871676315044432068767898751222
Q gi|254780336|r   15 CGVFGILGHPDAATL----TAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST   90 (488)
Q Consensus        15 CGI~Gi~~~~~~~~~----~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT   90 (488)
T Consensus         1 CgI~g~~~~~~~~~~~~~~~~~~~~~~~~rg~D~~Gi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~H~R~at   79 (220)
T cd00352           1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD-LLDEPLKSGVALGHVRLAT   79 (220)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCHHHHH-HHHCCCCCCEEEEEECCCC
T ss_conf             979999899875056799999999866357737050899939907999944763022323-2100356888999862730


Q ss_pred             CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q ss_conf             6898600278678746997199999655087899999998649824234307898898987302-567056899998653
Q gi|254780336|r   91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK-NGSCDRFIDSLRHVQ  169 (488)
Q Consensus        91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~-~~~~e~i~~~l~~l~  169 (488)
T Consensus        80 ~g~~~~~n~qPf~~~--~~~~~l~hNG~I~n~~~l~~~l~~~~~~~~~~tDsE~i~~l~~~~~~~~~~~~~i~~~~~~~~  157 (220)
T cd00352          80 NGLPSEANAQPFRSE--DGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLD  157 (220)
T ss_pred             CCCCCCCCCCCCEEC--CCCEEEEEEEEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             699863489798918--999999991477689999999986697307798599999999997241888999999999863


Q ss_pred             CCEEEEEEEC--CEEEEEEECCCCCEEEEEEC-CCEEEEEECCHHCCCCCCCEEEECCCCEEE
Q ss_conf             0439999639--97999982566541599826-956999861200104787412331787079
Q gi|254780336|r  170 GAYAMLALTR--TKLIATRDPIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETI  229 (488)
Q Consensus       170 Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~-~~~~v~ASEs~Al~~ig~~~irdv~PGEii  229 (488)
T Consensus       158 G~~~~i~~~~~~~~l~~~rd~~G~rpL~~~~~~~~~~~vaSE~~~~~~~~~~~~~~l~~g~~~  220 (220)
T cd00352         158 GPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL  220 (220)
T ss_pred             HHEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCEEEEEECHHHHHHCCCCEEEECCCCCCC
T ss_conf             224699997799879999689998785999917998999977898864896489998998779