HHsearch alignment for GI: 254780336 and conserved domain: cd01908
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.87 E-value=3.6e-20 Score=163.51 Aligned_cols=209 Identities=24% Similarity=0.287 Sum_probs=145.1
Q ss_pred CCEEEEEECCCCH-HHHHHHHHHHH--HCCC---------CCEEEEEEEE--CCEEEEEECCCCH-HHHCCCHHHHHHCC
Q ss_conf 5659999818533-68999999877--3158---------8702799997--9969998048716-76315044432068
Q gi|254780336|r 14 KCGVFGILGHPDA-ATLTAIGLHAL--QHRG---------QEATGIISFN--GNKFHSERHLGLV-GDHFTKPETLSLLP 78 (488)
Q Consensus 14 eCGI~Gi~~~~~~-~~~~~~gL~~L--QHRG---------qdsaGIa~~d--~~~i~~~K~~GlV-~dvf~~~~~l~~l~ 78 (488)
T Consensus 1 MCRll~y~g~~~~l~~~l~~~~~sl~~qs~~~~~~~~~~n~DGwGi~wy~~~~~~p~~~r~~~pa~sd~~-~~~l~~~i~ 79 (257)
T cd01908 1 MCRLLGYSGAPIPLEPLLIRPSHSLLVQSGGPREMKGTVHADGWGIGWYEGKGGRPFRYRSPLPAWSDIN-LESLARPIK 79 (257)
T ss_pred CCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHH-HHHHHHCCC
T ss_conf 9702501377754764265577317775168421479988997469888379954888689876658856-787653247
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 76789875122268986002786787469971999996550878999999986498-2423430789889898730256-
Q gi|254780336|r 79 GNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA-IFQSTSDTEVILHLIARSQKNG- 156 (488)
Q Consensus 79 G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~-~f~s~sDTEvI~~Li~~~~~~~- 156 (488)
T Consensus 80 s~~~laHvR~AT~G~v~~~N~HPF~~----~~~~F~HNG~i~~~~~~~~~~~~~~~~~~~G~TDSE~~F~~ll~~l~~~~ 155 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR----GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERD 155 (257)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCEEE----CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 75499998617789776356787266----57999967734787888898863354334678869999999999998618
Q ss_pred ------CCHHHHHHHHHHH-----CCEEEEEEECCEEEEEEECCCCCEEEEEEC------------------CCEEEEEE
Q ss_conf ------7056899998653-----043999963997999982566541599826------------------95699986
Q gi|254780336|r 157 ------SCDRFIDSLRHVQ-----GAYAMLALTRTKLIATRDPIGIRPLIMGEL------------------HGKPIFCS 207 (488)
Q Consensus 157 ------~~e~i~~~l~~l~-----Gayslv~l~~~~l~~~RDp~GiRPL~~G~~------------------~~~~v~AS 207 (488)
T Consensus 156 ~~~~~~~~~~l~~~~~~l~~~~~~~~lN~~~sdG~~l~a~r~~~~-~sLy~~~~~~~~~~~~~~~~~~~~~~~~~vvVAS 234 (257)
T cd01908 156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDGEYLIATRYASA-PSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVAS 234 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 876688999999999999842878269999987998999997799-9547886558765444110113368899999993
Q ss_pred CCHHCCCCCCCEEEECCCCEEEEEE
Q ss_conf 1200104787412331787079994
Q gi|254780336|r 208 ETCALEITGAKYIRDVENGETIVCE 232 (488)
Q Consensus 208 Es~Al~~ig~~~irdv~PGEiivi~ 232 (488)
T Consensus 235 ePL~~----~~~W~~v~~~~llvv~ 255 (257)
T cd01908 235 EPLTD----DEGWTEVPPGELVVVS 255 (257)
T ss_pred CCCCC----CCCCEECCCCEEEEEE
T ss_conf 89999----9795790898399994