Query gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 488 No_of_seqs 228 out of 4342 Neff 5.9 Searched_HMMs 23785 Date Mon May 30 09:40:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780336.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ecf_A Glutamine phosphoribosy 100.0 0 0 1171.0 41.6 459 15-482 1-481 (504) 2 1ao0_A Glutamine phosphoribosy 100.0 0 0 1155.1 40.9 458 15-480 1-459 (459) 3 2bpl_A Glucosamine--fructose-6 100.0 0 0 383.5 23.5 259 15-286 1-268 (608) 4 1xff_A D-fructose-6-, glucosam 100.0 0 0 380.4 22.3 219 15-241 1-222 (240) 5 1ct9_A Asparagine synthetase B 100.0 8.7E-31 3.7E-35 237.6 24.8 240 16-315 2-251 (553) 6 3mdn_A Glutamine amidotransfer 100.0 4.6E-32 1.9E-36 246.7 16.8 220 13-244 2-257 (274) 7 1te5_A Conserved hypothetical 100.0 8.5E-32 3.6E-36 244.8 8.8 207 14-232 1-247 (257) 8 1jgt_A Beta-lactam synthetase; 100.0 2.2E-27 9.4E-32 213.3 16.0 202 78-309 36-261 (513) 9 1q15_A CARA; CMPR, (2S,5S)-5-c 99.9 1.8E-24 7.4E-29 192.7 14.9 207 80-316 27-263 (503) 10 1o57_A PUR operon repressor; p 99.9 1.6E-25 6.6E-30 200.2 -1.6 201 184-393 16-232 (291) 11 1ofd_A Ferredoxin-dependent gl 99.7 2E-15 8.3E-20 128.2 20.2 198 29-237 147-398 (1520) 12 1ea0_A Glutamate synthase [NAD 99.7 4.2E-16 1.8E-20 133.0 16.0 184 44-238 166-400 (1479) 13 1wd5_A Hypothetical protein TT 99.4 2.8E-13 1.2E-17 113.0 6.1 167 276-481 4-205 (208) 14 1vch_A Phosphoribosyltransfera 99.4 2.1E-12 9E-17 106.6 8.8 117 276-392 36-155 (175) 15 1vdm_A Purine phosphoribosyltr 99.1 3.5E-10 1.5E-14 90.9 7.5 118 282-408 15-137 (153) 16 1y0b_A Xanthine phosphoribosyl 98.9 4.7E-09 2E-13 82.8 7.9 118 275-392 35-155 (197) 17 1l1q_A Adenine phosphoribosylt 98.8 1.2E-08 4.9E-13 80.0 6.9 111 276-387 36-147 (186) 18 2wns_A Orotate phosphoribosylt 98.6 1.9E-07 8E-12 71.4 8.5 133 276-445 43-178 (205) 19 1nul_A XPRT, xanthine-guanine 98.6 3.5E-08 1.5E-12 76.6 4.5 121 274-410 12-132 (152) 20 2jbh_A HHGP; glycosyltransfera 98.6 3.7E-07 1.6E-11 69.3 9.2 141 255-410 37-193 (225) 21 2jky_A Hypoxanthine-guanine ph 98.6 9.6E-09 4E-13 80.6 1.0 112 278-390 13-135 (213) 22 2ywu_A Hypoxanthine-guanine ph 98.5 5.5E-07 2.3E-11 68.1 8.9 136 269-415 14-157 (181) 23 1qb7_A APRT, adenine phosphori 98.5 4.3E-07 1.8E-11 68.9 8.1 127 259-391 38-172 (236) 24 2yzk_A OPRT, oprtase, orotate 98.5 8E-07 3.4E-11 66.9 9.0 133 276-446 39-174 (178) 25 1yfz_A Hypoxanthine-guanine ph 98.5 9.7E-07 4.1E-11 66.3 9.1 135 270-415 38-180 (205) 26 1g2q_A Adenine phosphoribosylt 98.4 5.8E-07 2.4E-11 67.9 7.1 116 275-393 41-158 (187) 27 3hvu_A Hypoxanthine phosphorib 98.4 9.8E-07 4.1E-11 66.3 7.9 139 269-417 35-181 (204) 28 3ohp_A Hypoxanthine phosphorib 98.4 1.6E-06 6.7E-11 64.8 8.8 135 269-410 9-150 (177) 29 3o7m_A Hypoxanthine phosphorib 98.3 1.2E-06 5.2E-11 65.6 7.4 138 270-418 14-160 (186) 30 2dy0_A APRT, adenine phosphori 98.3 1.2E-06 4.9E-11 65.7 6.8 116 276-393 46-162 (190) 31 1hgx_A HGXPRTASE, hypoxanthine 98.3 8.8E-07 3.7E-11 66.6 5.9 134 270-414 16-157 (183) 32 2geb_A Hypoxanthine-guanine ph 98.3 4E-06 1.7E-10 61.9 9.0 135 270-414 18-159 (185) 33 1pzm_A HGPRT, hypoxanthine-gua 98.3 4.9E-06 2.1E-10 61.3 8.7 140 268-417 27-183 (211) 34 1z7g_A HGPRT, HGPRTASE, hypoxa 98.2 7E-06 2.9E-10 60.2 8.7 139 257-410 31-185 (217) 35 1zn8_A APRT, adenine phosphori 98.2 3.5E-06 1.5E-10 62.4 7.1 111 280-392 45-155 (180) 36 2p1z_A Phosphoribosyltransfera 98.2 9.6E-06 4E-10 59.3 8.4 103 276-392 46-149 (180) 37 1tc1_A Protein (hypoxanthine p 98.1 1.5E-05 6.2E-10 57.9 8.8 140 270-417 13-168 (220) 38 1w30_A PYRR bifunctional prote 98.1 2.5E-05 1.1E-09 56.2 9.9 142 270-417 18-179 (201) 39 1fsg_A HGPRTASE, hypoxanthine- 98.1 7.8E-06 3.3E-10 59.9 7.2 132 273-415 54-204 (233) 40 1a3c_A PYRR, pyrimidine operon 98.1 1.2E-05 5.1E-10 58.5 7.9 143 269-415 8-163 (181) 41 1cjb_A Protein (hypoxanthine-g 98.1 6.7E-06 2.8E-10 60.4 6.5 157 252-410 28-196 (231) 42 1dqn_A Guanine phosphoribosylt 98.0 1.1E-06 4.5E-11 66.0 1.4 110 274-392 41-153 (230) 43 3m3h_A OPRT, oprtase, orotate 98.0 1.9E-05 8.1E-10 57.1 7.7 133 277-445 70-205 (234) 44 2ji4_A Phosphoribosyl pyrophos 98.0 5.3E-06 2.2E-10 61.1 4.6 157 285-445 183-359 (379) 45 2aee_A OPRT, oprtase, orotate 97.9 4.7E-05 2E-09 54.3 8.1 134 276-445 49-185 (211) 46 2h06_A Ribose-phosphate pyroph 97.8 2.9E-05 1.2E-09 55.8 6.1 135 293-445 163-300 (326) 47 1ufr_A TT1027, PYR mRNA-bindin 97.8 7E-05 2.9E-09 53.1 7.6 138 270-414 9-160 (181) 48 3dah_A Ribose-phosphate pyroph 97.8 6.1E-06 2.6E-10 60.6 2.0 143 282-443 157-300 (319) 49 3dez_A OPRT, oprtase, orotate 97.8 9.9E-05 4.2E-09 52.0 8.1 134 276-445 81-217 (243) 50 1dku_A Protein (phosphoribosyl 97.8 4.7E-05 2E-09 54.3 6.4 134 294-445 168-303 (317) 51 3mjd_A Orotate phosphoribosylt 97.8 7.8E-05 3.3E-09 52.7 7.3 142 280-445 66-211 (232) 52 2ps1_A Orotate phosphoribosylt 97.7 0.00016 6.7E-09 50.6 8.2 139 277-445 49-203 (226) 53 1u9y_A RPPK;, ribose-phosphate 97.7 5.9E-05 2.5E-09 53.6 5.9 88 293-395 155-243 (284) 54 3n2l_A OPRT, oprtase, orotate 97.6 0.00027 1.1E-08 48.9 8.3 137 281-446 74-217 (238) 55 1lh0_A OMP synthase; loop clos 97.2 0.0022 9.2E-08 42.4 8.9 138 280-446 48-192 (213) 56 1i5e_A Uracil phosphoribosyltr 94.0 0.1 4.3E-06 30.5 5.7 87 295-392 73-159 (209) 57 2ehj_A Uracil phosphoribosyltr 91.3 0.16 6.9E-06 29.1 3.7 87 295-392 72-158 (208) 58 1o5o_A Uracil phosphoribosyltr 90.8 0.16 6.6E-06 29.2 3.2 85 295-392 85-171 (221) 59 1bd3_D Uprtase, uracil phospho 89.5 0.13 5.4E-06 29.8 1.9 50 347-396 146-199 (243) 60 1v9s_A Uracil phosphoribosyltr 88.0 0.29 1.2E-05 27.3 2.9 46 347-392 113-158 (208) 61 2e55_A Uracil phosphoribosyltr 86.5 0.31 1.3E-05 27.1 2.4 104 274-391 24-155 (208) 62 2f62_A Nucleoside 2-deoxyribos 86.2 0.8 3.3E-05 24.2 4.3 28 293-320 68-103 (161) 63 3ehd_A Uncharacterized conserv 84.4 1.6 6.9E-05 22.0 5.2 28 292-319 69-101 (162) 64 1s2d_A Purine trans deoxyribos 82.8 1.3 5.5E-05 22.7 4.2 29 292-320 81-114 (167) 65 1dcf_A ETR1 protein; beta-alph 82.1 1.5 6.3E-05 22.3 4.3 34 354-391 4-37 (136) 66 2d92_A INAD-like protein; PDZ 80.8 1.6 6.6E-05 22.1 4.0 43 354-396 63-105 (108) 67 1vae_A Rhophilin 2, rhophilin, 79.7 0.91 3.8E-05 23.8 2.5 45 354-398 54-98 (111) 68 2vsv_A Rhophilin-2; scaffold p 77.8 1.8 7.5E-05 21.7 3.5 43 354-396 62-104 (109) 69 2yt7_A Amyloid beta A4 precurs 77.0 3 0.00013 20.1 4.5 44 354-397 56-101 (101) 70 2djt_A Unnamed protein product 74.4 3.5 0.00015 19.6 4.3 41 355-396 58-98 (104) 71 1xtt_A Probable uracil phospho 73.9 3 0.00012 20.1 3.8 91 295-391 74-167 (216) 72 2dkr_A LIN-7 homolog B; LIN-7B 70.9 4 0.00017 19.2 3.9 42 354-396 49-90 (93) 73 1mio_B Nitrogenase molybdenum 70.5 4.9 0.00021 18.6 8.6 89 300-396 243-347 (458) 74 1ta9_A Glycerol dehydrogenase; 70.4 4.9 0.00021 18.6 4.8 28 109-136 92-121 (450) 75 2eeg_A PDZ and LIM domain prot 70.0 3.9 0.00016 19.3 3.7 42 354-396 50-91 (94) 76 2dlu_A INAD-like protein; PDZ 69.3 3.9 0.00017 19.3 3.6 42 354-396 57-98 (111) 77 1vk9_A Conserved hypothetical 69.1 1.8 7.4E-05 21.8 1.7 31 164-195 21-52 (151) 78 2eei_A PDZ domain-containing p 68.9 3.9 0.00016 19.3 3.5 43 354-397 50-92 (106) 79 1um1_A KIAA1849 protein, RSGI 67.9 5.1 0.00021 18.5 3.9 42 354-396 55-96 (110) 80 1uew_A Membrane associated gua 65.3 6.2 0.00026 17.9 4.2 41 354-395 62-102 (114) 81 2vsp_A PDZ domain-containing p 65.0 4.9 0.0002 18.6 3.3 43 354-397 45-87 (91) 82 3dmp_A Uracil phosphoribosyltr 64.8 2.1 8.8E-05 21.2 1.4 82 295-391 80-165 (217) 83 2fe5_A Presynaptic protein SAP 64.4 6.2 0.00026 17.8 3.8 40 355-395 53-92 (94) 84 2awx_A Synapse associated prot 64.3 6.3 0.00026 17.8 3.8 45 355-400 53-97 (105) 85 1q7x_A PDZ2B domain of PTP-BAS 64.0 4.7 0.0002 18.7 3.1 42 354-396 61-102 (108) 86 1m1n_A Nitrogenase molybdenum- 63.5 6.7 0.00028 17.6 5.9 89 295-392 271-378 (491) 87 2dmz_A INAD-like protein; PDZ 63.2 6.8 0.00028 17.6 3.9 39 354-393 65-103 (129) 88 1f8y_A Nucleoside 2-deoxyribos 62.6 3.6 0.00015 19.6 2.3 29 292-320 78-111 (157) 89 1gmx_A GLPE protein; transfera 62.3 5.6 0.00024 18.2 3.3 35 354-391 55-89 (108) 90 3ilm_A ALR3790 protein; rhodan 62.1 6.8 0.00028 17.6 3.6 33 356-391 55-87 (141) 91 2jil_A GRIP1 protein, glutamat 61.9 5.7 0.00024 18.1 3.2 43 355-398 52-94 (97) 92 2qg1_A Multiple PDZ domain pro 61.7 7.2 0.0003 17.4 4.0 42 354-396 48-89 (92) 93 2eno_A Synaptojanin-2-binding 61.3 3.8 0.00016 19.3 2.3 40 355-395 67-106 (120) 94 2fne_A Multiple PDZ domain pro 60.9 6.9 0.00029 17.5 3.5 41 355-396 73-113 (117) 95 1ufx_A KIAA1526 protein; PDZ d 60.4 5.5 0.00023 18.2 2.9 43 354-396 51-97 (103) 96 2ehr_A INAD-like protein; PDZ 60.4 6.9 0.00029 17.5 3.4 41 355-396 70-110 (117) 97 1x45_A Amyloid beta (A4) precu 60.3 7.6 0.00032 17.2 4.0 43 354-396 52-95 (98) 98 2k0z_A Uncharacterized protein 59.4 7.8 0.00033 17.1 4.0 34 355-391 54-87 (110) 99 2byg_A Channel associated prot 59.1 5.6 0.00024 18.2 2.8 42 355-397 74-115 (117) 100 2vwr_A Ligand of NUMB protein 58.7 6.7 0.00028 17.6 3.1 41 354-395 48-88 (95) 101 1n7e_A AMPA receptor interacti 57.5 8.4 0.00035 16.9 4.2 41 355-396 50-90 (97) 102 1whd_A RGS3, regulator of G-pr 57.4 8.4 0.00035 16.9 3.6 41 354-395 54-94 (100) 103 2jxo_A Ezrin-radixin-moesin-bi 57.2 7.6 0.00032 17.2 3.2 41 354-395 51-91 (98) 104 3luf_A Two-component system re 57.1 8.2 0.00034 17.0 3.3 28 356-386 123-150 (259) 105 3eod_A Protein HNR; response r 57.1 8.5 0.00036 16.9 4.0 31 355-388 5-35 (130) 106 2kjd_A Sodium/hydrogen exchang 56.1 7.7 0.00032 17.2 3.1 40 354-394 51-90 (128) 107 2r4h_A Membrane-associated gua 55.9 8.9 0.00037 16.7 3.4 41 354-395 68-108 (112) 108 1d5g_A Human phosphatase HPTP1 55.8 8.9 0.00038 16.7 3.8 42 354-396 52-93 (96) 109 3h5i_A Response regulator/sens 55.8 5.5 0.00023 18.2 2.3 29 355-386 3-31 (140) 110 2jik_A Synaptojanin-2 binding 55.4 7.1 0.0003 17.4 2.8 40 355-395 57-96 (101) 111 2h2b_A Tight junction protein 55.0 8 0.00034 17.1 3.0 41 354-395 56-96 (107) 112 2q3e_A UDP-glucose 6-dehydroge 54.7 6.9 0.00029 17.5 2.7 81 308-397 286-372 (467) 113 2csj_A TJP2 protein; PDZ domai 54.6 7.6 0.00032 17.2 2.8 41 354-395 63-103 (117) 114 1wi2_A Riken cDNA 2700099C19; 54.5 9.4 0.00039 16.6 3.4 43 354-396 59-101 (104) 115 3khf_A Microtubule-associated 54.2 9.4 0.0004 16.6 3.8 41 354-395 52-92 (99) 116 2edz_A PDZ domain-containing p 53.8 9.6 0.0004 16.5 3.8 41 354-395 56-96 (114) 117 1y7n_A Amyloid beta A4 precurs 53.5 9.7 0.00041 16.5 3.5 39 354-393 49-87 (90) 118 1i16_A Interleukin 16, LCF; cy 52.9 9.9 0.00042 16.4 3.6 43 355-397 77-119 (130) 119 3c97_A Signal transduction his 52.3 10 0.00042 16.4 3.8 28 355-385 8-35 (140) 120 2dc2_A GOPC, golgi associated 52.1 8.7 0.00037 16.8 2.8 42 355-397 55-98 (103) 121 1wf8_A Neurabin-I; PDZ domain, 51.8 10 0.00043 16.3 3.4 42 354-396 59-100 (107) 122 1mio_A Nitrogenase molybdenum 51.4 10 0.00044 16.3 5.6 88 297-392 259-366 (533) 123 3ngh_A PDZ domain-containing p 51.4 10 0.00044 16.2 3.7 41 354-395 44-84 (106) 124 3kht_A Response regulator; PSI 50.6 6.2 0.00026 17.9 1.9 33 355-390 3-36 (144) 125 2yub_A LIMK-2, LIM domain kina 50.2 11 0.00046 16.1 3.7 44 354-398 64-107 (118) 126 2pa1_A PDZ and LIM domain prot 49.8 10 0.00042 16.4 2.8 39 354-393 44-82 (87) 127 2he4_A Na(+)/H(+) exchange reg 49.5 11 0.00047 16.0 3.5 42 354-396 46-87 (90) 128 2db5_A INAD-like protein; PDZ 49.1 11 0.00047 16.0 4.0 44 354-398 73-117 (128) 129 2khz_A C-MYC-responsive protei 49.1 6.8 0.00028 17.6 1.9 29 292-320 77-108 (165) 130 1wg6_A Hypothetical protein (r 48.9 11 0.00048 16.0 3.6 40 354-393 74-119 (127) 131 2daz_A INAD-like protein; PDZ 48.8 11 0.00048 16.0 3.5 42 354-396 70-111 (124) 132 3bpu_A Membrane-associated gua 48.8 11 0.00048 16.0 3.7 40 353-392 42-82 (88) 133 3hix_A ALR3790 protein; rhodan 48.7 11 0.00048 16.0 3.9 32 356-390 51-82 (106) 134 2fsx_A RV0390, COG0607: rhodan 48.4 12 0.00048 15.9 3.3 37 353-392 76-112 (148) 135 1wha_A KIAA0147 protein, scrib 48.1 12 0.00049 15.9 3.2 43 355-398 58-100 (105) 136 2kom_A Partitioning defective 47.8 12 0.0005 15.9 3.7 41 355-395 78-119 (121) 137 2jtq_A Phage shock protein E; 47.8 12 0.0005 15.9 3.7 34 356-392 40-73 (85) 138 2iwo_A Multiple PDZ domain pro 47.4 12 0.0005 15.8 4.1 41 355-396 73-113 (120) 139 2e7k_A Maguk P55 subfamily mem 47.4 11 0.00048 16.0 2.8 39 356-396 50-88 (91) 140 1v6b_A Harmonin isoform A1; st 46.7 12 0.00051 15.8 4.1 46 354-399 62-111 (118) 141 1um7_A Synapse-associated prot 46.6 12 0.00052 15.7 3.4 41 354-395 58-98 (113) 142 3i4w_A Disks large homolog 4; 46.4 10 0.00042 16.4 2.4 43 354-397 54-96 (104) 143 1m5z_A GRIP, AMPA receptor int 46.0 13 0.00053 15.7 3.5 39 354-393 50-88 (91) 144 3gge_A PDZ domain-containing p 45.9 13 0.00053 15.7 3.2 43 354-396 47-90 (95) 145 1yt8_A Thiosulfate sulfurtrans 45.7 13 0.00053 15.7 3.5 34 355-392 320-353 (539) 146 1u39_A Amyloid beta A4 precurs 45.0 13 0.00054 15.6 2.8 38 354-392 40-77 (80) 147 2q3g_A PDZ and LIM domain prot 44.9 13 0.00055 15.6 4.0 39 354-393 45-83 (89) 148 1g9o_A NHE-RF; PDZ domain, com 44.8 13 0.00055 15.6 3.3 42 354-396 45-86 (91) 149 1v62_A KIAA1719 protein; struc 44.7 13 0.00055 15.5 3.8 41 354-395 61-101 (117) 150 3cbz_A Dishevelled-2; PDZ doma 43.8 13 0.00057 15.5 3.5 44 354-397 52-97 (108) 151 3lte_A Response regulator; str 43.7 11 0.00046 16.1 2.3 28 356-386 5-32 (132) 152 2qkv_A Inactivation-NO-after-p 43.5 14 0.00057 15.4 3.8 40 356-396 52-91 (96) 153 1uit_A Human discs large 5 pro 43.2 14 0.00058 15.4 3.2 45 354-399 60-104 (117) 154 2g5m_B Neurabin-2; spinophilin 42.9 14 0.00058 15.4 2.8 39 355-394 55-93 (113) 155 1qgu_B Protein (nitrogenase mo 42.4 14 0.00059 15.3 7.6 89 300-396 291-395 (519) 156 2koj_A Partitioning defective 42.3 14 0.0006 15.3 3.7 43 354-396 58-101 (111) 157 3b76_A E3 ubiquitin-protein li 42.2 13 0.00057 15.5 2.5 38 355-393 73-110 (118) 158 2jre_A C60-1 PDZ domain peptid 41.9 14 0.0006 15.3 3.0 38 355-393 64-101 (108) 159 2yuy_A RHO GTPase activating p 41.7 12 0.0005 15.9 2.2 39 354-393 79-117 (126) 160 2ego_A General receptor for ph 41.7 14 0.00061 15.2 3.7 38 354-392 55-92 (96) 161 1z87_A Alpha-1-syntrophin; pro 41.5 15 0.00061 15.2 2.7 39 354-393 122-160 (263) 162 3hg7_A D-isomer specific 2-hyd 41.3 15 0.00062 15.2 4.6 108 355-474 138-266 (324) 163 1wf7_A Enigma homologue protei 41.0 15 0.00062 15.2 4.1 44 354-398 47-90 (103) 164 1uju_A Scribble; PDZ domain, c 41.0 11 0.00048 16.0 2.0 39 355-394 64-102 (111) 165 2rhm_A Putative kinase; ZP_007 40.8 15 0.00063 15.1 4.4 102 295-396 9-115 (193) 166 1qxn_A SUD, sulfide dehydrogen 40.8 15 0.00063 15.1 3.2 33 355-390 80-112 (137) 167 2edv_A FERM and PDZ domain-con 40.5 15 0.00063 15.1 4.0 40 353-393 47-86 (96) 168 2zxr_A Single-stranded DNA spe 40.5 15 0.00063 15.1 4.1 18 270-287 403-420 (666) 169 1p3y_1 MRSD protein; flavoprot 40.4 15 0.00063 15.1 4.4 51 358-414 116-177 (194) 170 1uep_A Membrane associated gua 40.3 12 0.00051 15.8 2.1 47 354-400 53-100 (103) 171 2krg_A Na(+)/H(+) exchange reg 40.2 14 0.00059 15.3 2.4 12 39-50 16-27 (216) 172 1jq5_A Glycerol dehydrogenase; 40.2 15 0.00064 15.1 3.7 30 373-413 296-325 (370) 173 3mnf_A PAC2 family protein; PS 39.9 15 0.00063 15.1 2.5 33 372-404 100-136 (250) 174 1tp5_A Presynaptic density pro 39.6 15 0.00062 15.2 2.4 41 355-396 58-98 (119) 175 1tq1_A AT5G66040, senescence-a 39.1 16 0.00066 15.0 2.7 35 355-392 80-114 (129) 176 1wfv_A Membrane associated gua 38.8 16 0.00067 14.9 3.3 43 354-397 55-97 (103) 177 2vph_A Tyrosine-protein phosph 38.5 16 0.00068 14.9 2.8 40 354-393 50-92 (100) 178 3h1g_A Chemotaxis protein CHEY 38.3 16 0.00068 14.9 4.0 34 355-391 3-36 (129) 179 1n7t_A 99-MER peptide of densi 38.2 16 0.00068 14.9 3.4 39 354-393 60-98 (103) 180 3o46_A Maguk P55 subfamily mem 38.0 16 0.00069 14.8 3.6 41 355-397 48-88 (93) 181 1x5q_A LAP4 protein; PDZ domai 37.9 16 0.00069 14.8 3.5 39 354-393 64-102 (110) 182 2pkt_A PDZ and LIM domain prot 37.6 17 0.0007 14.8 3.5 39 355-394 46-84 (91) 183 2q9v_A Membrane-associated gua 37.2 12 0.00051 15.8 1.6 39 355-393 47-86 (90) 184 1qav_A Alpha-1 syntrophin (res 36.9 17 0.00072 14.7 3.1 38 354-392 49-86 (90) 185 3lqk_A Dipicolinate synthase s 36.5 17 0.00073 14.7 4.2 15 293-307 87-101 (201) 186 1tmy_A CHEY protein, TMY; chem 36.1 18 0.00074 14.6 4.0 26 357-385 2-27 (120) 187 3mcu_A Dipicolinate synthase, 35.9 18 0.00074 14.6 4.5 14 293-306 85-98 (207) 188 1ujd_A KIAA0559 protein; PDZ d 35.5 18 0.00075 14.6 2.5 39 355-394 69-107 (117) 189 2v90_A PDZ domain-containing p 35.2 18 0.00076 14.5 3.4 40 355-395 49-88 (96) 190 2rcz_A Tight junction protein 35.1 18 0.00076 14.5 3.6 38 356-394 42-79 (81) 191 2edp_A Fragment, shroom family 35.1 14 0.0006 15.3 1.7 39 355-395 55-93 (100) 192 2jba_A Phosphate regulon trans 35.0 18 0.00077 14.5 4.3 31 357-391 2-32 (127) 193 1gvn_B Zeta; postsegregational 34.9 18 0.00077 14.5 3.0 46 351-396 103-148 (287) 194 2z17_A Pleckstrin homology SEC 34.3 19 0.00078 14.4 2.9 38 354-392 66-103 (104) 195 3grf_A Ornithine carbamoyltran 34.1 19 0.00079 14.4 6.4 108 271-400 87-199 (328) 196 2iwn_A Multiple PDZ domain pro 34.1 19 0.00079 14.4 2.6 40 354-394 52-91 (97) 197 1mfg_A ERB-B2 interacting prot 33.9 19 0.00079 14.4 3.6 39 354-393 52-90 (95) 198 1pvv_A Otcase, ornithine carba 33.9 19 0.00079 14.4 6.0 91 293-402 102-194 (315) 199 1r6j_A Syntenin 1; PDZ, membra 33.8 19 0.0008 14.4 3.2 38 355-393 42-79 (82) 200 2eeh_A PDZ domain-containing p 33.8 19 0.0008 14.4 2.9 40 354-395 54-93 (100) 201 2r25_B Osmosensing histidine p 33.3 19 0.00081 14.3 3.8 32 358-392 3-34 (133) 202 2fcf_A Multiple PDZ domain pro 32.8 20 0.00083 14.3 3.3 41 354-395 58-98 (103) 203 2dm8_A INAD-like protein; PDZ 32.5 20 0.00084 14.2 4.1 46 354-400 62-107 (116) 204 3egg_C Spinophilin; PP1, serin 32.4 20 0.00084 14.2 3.7 39 354-393 130-168 (170) 205 1u3b_A Amyloid beta A4 precurs 32.2 20 0.00084 14.2 2.8 39 354-393 130-168 (185) 206 1o2d_A Alcohol dehydrogenase, 32.2 20 0.00085 14.2 3.9 29 123-151 59-93 (371) 207 3gl9_A Response regulator; bet 32.1 20 0.00085 14.2 2.8 25 358-385 3-27 (122) 208 2w37_A Ornithine carbamoyltran 31.8 20 0.00086 14.2 6.4 108 270-402 108-216 (359) 209 2o2t_A Multiple PDZ domain pro 31.8 20 0.00086 14.2 4.0 42 354-396 68-110 (117) 210 1k68_A Phytochrome response re 31.8 20 0.00086 14.2 4.2 32 357-391 2-34 (140) 211 1q3o_A Shank1; PDZ, GKAP, pept 31.8 20 0.00086 14.2 3.6 37 355-392 64-100 (109) 212 1ltq_A Polynucleotide kinase; 31.7 20 0.00086 14.2 5.1 91 280-389 195-295 (301) 213 2uzc_A Human pdlim5, PDZ and L 31.2 21 0.00088 14.1 3.9 39 355-394 46-84 (88) 214 1ihj_A INAD; intermolecular di 31.1 21 0.00088 14.1 3.1 38 355-393 57-94 (98) 215 1fs1_B SKP1, cyclin A/CDK2-ass 31.0 21 0.00088 14.1 2.7 25 359-385 37-61 (141) 216 2d90_A PDZ domain containing p 30.9 21 0.00089 14.1 4.4 42 354-396 48-89 (102) 217 1u37_A Amyloid beta A4 precurs 30.7 21 0.00089 14.1 3.7 38 355-392 49-87 (89) 218 1b8q_A Protein (neuronal nitri 30.6 21 0.00089 14.0 2.7 41 356-396 54-95 (127) 219 2f5y_A Regulator of G-protein 30.6 21 0.0009 14.0 3.5 39 354-393 42-80 (91) 220 1j58_A YVRK protein; cupin, de 30.3 22 0.0009 14.0 4.3 47 186-232 86-135 (385) 221 3hpk_A Protein interacting wit 30.1 22 0.00091 14.0 3.1 39 354-393 64-102 (125) 222 1ml4_A Aspartate transcarbamoy 29.6 22 0.00093 13.9 5.0 91 295-401 104-195 (308) 223 2i04_A Membrane-associated gua 29.3 22 0.00094 13.9 3.6 38 355-392 45-83 (85) 224 1va8_A Maguk P55 subfamily mem 28.9 23 0.00095 13.8 3.3 38 354-392 67-104 (113) 225 2w4f_A Protein LAP4; structura 28.8 23 0.00096 13.8 3.9 40 355-395 53-92 (97) 226 3m6m_D Sensory/regulatory prot 28.3 23 0.00097 13.8 2.3 32 352-386 9-40 (143) 227 2px0_A Flagellar biosynthesis 28.3 23 0.00098 13.8 6.5 104 299-440 141-251 (296) 228 3daa_A D-amino acid aminotrans 28.2 23 0.00098 13.8 2.0 31 355-385 186-218 (277) 229 3eqz_A Response regulator; str 27.8 23 0.00095 13.8 1.8 28 358-389 4-31 (135) 230 2zgi_A Putative 4-amino-4-deox 27.7 24 0.001 13.7 4.3 26 360-385 172-197 (246) 231 1vb7_A PDZ and LIM domain 2; P 27.5 24 0.001 13.7 4.1 41 354-395 48-88 (94) 232 3ilh_A Two component response 27.4 24 0.001 13.7 3.1 34 354-390 6-40 (146) 233 1t2m_A AF-6 protein; chromosom 26.8 25 0.001 13.6 2.9 39 354-393 51-89 (101) 234 1vzw_A Phosphoribosyl isomeras 26.8 19 0.00079 14.4 1.2 21 220-240 155-175 (244) 235 2rdm_A Response regulator rece 26.8 25 0.001 13.6 3.0 10 357-366 5-14 (132) 236 1rgw_A ZAsp protein; PDZ, cyph 26.7 25 0.001 13.6 2.9 39 354-393 43-81 (85) 237 2kpk_A Membrane-associated gua 26.5 25 0.001 13.6 4.3 41 354-394 62-103 (129) 238 2gzv_A PRKCA-binding protein; 26.5 25 0.001 13.6 3.2 35 356-391 71-105 (114) 239 1kq3_A Glycerol dehydrogenase; 26.2 4.4 0.00018 18.9 -2.1 13 373-385 303-315 (376) 240 1iye_A Branched-chain amino ac 26.1 25 0.0011 13.5 2.0 31 355-385 203-235 (309) 241 1kwa_A Hcask/LIN-2 protein; PD 25.8 26 0.0011 13.5 3.5 38 355-393 45-82 (88) 242 1mb3_A Cell division response 25.7 26 0.0011 13.5 2.3 25 358-385 2-26 (124) 243 2i1n_A Discs, large homolog 3; 25.7 26 0.0011 13.5 3.9 39 354-393 53-91 (102) 244 3lua_A Response regulator rece 25.5 26 0.0011 13.4 2.7 32 357-391 4-35 (140) 245 1xfj_A Conserved hypothetical 25.2 15 0.00063 15.1 0.4 46 368-415 134-184 (261) 246 1qs0_B 2-oxoisovalerate dehydr 25.1 25 0.001 13.6 1.5 48 352-400 263-314 (338) 247 3gsl_A Disks large homolog 4; 25.1 26 0.0011 13.4 2.4 39 356-395 151-189 (196) 248 1v6z_A Hypothetical protein TT 25.0 27 0.0011 13.4 3.2 14 121-134 84-97 (228) 249 1vee_A Proline-rich protein fa 24.9 27 0.0011 13.4 3.7 34 355-391 72-105 (134) 250 1ujv_A Membrane associated gua 24.9 27 0.0011 13.3 3.6 39 354-392 48-87 (96) 251 3e17_A Tight junction protein 24.7 27 0.0011 13.3 3.8 38 355-393 41-78 (88) 252 3mks_A Suppressor of kinetocho 24.3 27 0.0011 13.3 2.4 22 360-383 51-72 (169) 253 1wif_A RSGI RUH-020, riken cDN 24.2 27 0.0011 13.3 4.2 41 354-394 68-109 (126) 254 1dmg_A Ribosomal protein L4; a 24.0 28 0.0012 13.2 2.6 52 338-392 103-156 (225) 255 2rpr_A Flywch-type zinc finger 24.0 28 0.0012 13.2 2.3 23 99-121 8-31 (87) 256 3eme_A Rhodanese-like domain p 23.9 28 0.0012 13.2 3.5 32 356-390 55-86 (103) 257 2qvg_A Two component response 23.4 28 0.0012 13.2 3.8 34 356-392 6-40 (143) 258 1x6d_A Interleukin-16; PDZ dom 23.2 29 0.0012 13.1 2.9 34 355-388 62-95 (119) 259 2vz5_A TAX1-binding protein 3; 23.1 29 0.0012 13.1 2.9 38 356-393 84-121 (139) 260 1sy7_A Catalase 1; heme oxidat 23.0 29 0.0012 13.1 6.0 86 304-398 490-575 (715) 261 3mw9_A GDH 1, glutamate dehydr 22.7 29 0.0012 13.1 5.5 136 273-415 140-296 (501) 262 1wv9_A Rhodanese homolog TT165 22.5 29 0.0012 13.0 3.3 32 355-389 51-82 (94) 263 1f6k_A N-acetylneuraminate lya 22.5 29 0.0012 13.0 5.1 12 11-22 1-12 (293) 264 3dth_A Branched-chain amino ac 22.5 29 0.0012 13.0 2.0 22 364-385 268-289 (372) 265 2dhm_A Protein BOLA; stationar 22.4 29 0.0012 13.0 2.9 93 328-444 3-95 (107) 266 2wiu_B HTH-type transcriptiona 22.1 29 0.0012 13.1 1.4 54 270-323 13-73 (88) 267 1w9e_A Syntenin 1; cell adhesi 21.9 30 0.0013 13.0 4.1 37 355-392 126-162 (166) 268 2q0q_A ARYL esterase; SGNH hyd 21.8 24 0.001 13.7 1.0 12 373-384 111-122 (216) 269 3crn_A Response regulator rece 21.7 30 0.0013 12.9 2.9 24 358-384 4-27 (132) 270 1p6q_A CHEY2; chemotaxis, sign 21.6 31 0.0013 12.9 3.3 29 359-390 8-36 (129) 271 1m1n_B Nitrogenase molybdenum- 21.5 31 0.0013 12.9 8.3 89 300-396 294-398 (522) 272 2o2k_A Methionine synthase; C- 21.3 20 0.00084 14.3 0.4 47 260-306 295-347 (355) 273 1uez_A KIAA1526 protein; PDZ d 21.2 30 0.0013 12.9 1.4 35 354-388 53-87 (101) 274 1wi4_A Synip, syntaxin binding 21.1 31 0.0013 12.9 4.0 39 354-392 60-101 (109) 275 2p2v_A Alpha-2,3-sialyltransfe 21.0 31 0.0013 12.8 2.7 23 368-390 146-168 (288) 276 3f6p_A Transcriptional regulat 20.7 32 0.0013 12.8 2.4 26 357-385 2-27 (120) 277 1q60_A General transcription f 20.4 31 0.0013 12.8 1.3 15 277-291 16-30 (99) 278 3kzd_A TIAM-1, T-lymphoma inva 20.4 32 0.0014 12.7 3.5 37 354-393 53-89 (94) No 1 >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Probab=100.00 E-value=0 Score=1170.98 Aligned_cols=459 Identities=40% Similarity=0.653 Sum_probs=424.9 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC-EEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 659999818533689999998773158870279999799-6999804871676315044432068767898751222689 Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGN-KFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488) Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~-~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488) |||||++++.+++..+++||++|||||||||||++++++ .++.+|++|+|+++|.. ..++.++|++|||||||||+|. T Consensus 1 CGI~Gi~~~~~~~~~l~~gL~~LQHRGqdsaGIa~~d~~~~~~~~K~~GlV~~vf~~-~~l~~l~G~~gIGH~RYsT~G~ 79 (504) T 1ecf_A 1 CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEA-RHMQRLQGNMGIGHVRYPTAGS 79 (504) T ss_dssp CEEEEEECSSCCHHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCH-HHHHHCCSSEEEEEEECCBTTB T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCHHHHHCH-HHHHCCCCCEEEEEEECCCCCC T ss_conf 969999887726999999998861365102379999489669999779728886460-0142288758999940546899 Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHCCC---------CCCHHHHH Q ss_conf 86002786787469971999996550878999999986-498242343078988989873025---------67056899 Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS-SGAIFQSTSDTEVILHLIARSQKN---------GSCDRFID 163 (488) Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~-~g~~f~s~sDTEvI~~Li~~~~~~---------~~~e~i~~ 163 (488) ++.+|+|||+.++.. ++++||||||+|+.+|+++|.+ .|..|+++||||+|+|+|++.... ++.+++.+ T Consensus 80 ~s~~naQP~~~~~~~-~ialvhNGnI~N~~eL~~~l~~~~g~~f~s~sDtEvi~~li~~~l~~~~~~~~~~~~~~~ai~~ 158 (504) T 1ecf_A 80 SSASEAQPFYVNSPY-GITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAA 158 (504) T ss_dssp CTTSCCSCEEECSSS-CEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHH T ss_pred CCCCCCCCCEECCCC-CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 974358997851799-7799955873679999998762168654335642578999999986413454210148999999 Q ss_pred HHHHHHCCEEEEEEEC-CEEEEEEECCCCCEEEEEECC-----CEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCC Q ss_conf 9986530439999639-979999825665415998269-----5699986120010478741233178707999408984 Q gi|254780336|r 164 SLRHVQGAYAMLALTR-TKLIATRDPIGIRPLIMGELH-----GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDG 237 (488) Q Consensus 164 ~l~~l~Gayslv~l~~-~~l~~~RDp~GiRPL~~G~~~-----~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g 237 (488) ++++++|+||+++++. ++++++|||+|+||||||+.+ +.|++|||||||+.+|++++|||+|||+++++ ++| T Consensus 159 ~~~~l~Gays~v~l~~~~~~~a~RDp~GiRPL~iGk~d~~~~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~i~--~~G 236 (504) T 1ecf_A 159 TNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYIT--EEG 236 (504) T ss_dssp HHHHCCEEEEEEEEETTTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEE--TTC T ss_pred HHHHCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECHHHHHHCCCEEEEECCCCEEEEEE--CCC T ss_conf 986437866999998079835998369987559985035678835999925377753497289962898799998--999 Q ss_pred EEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 799875307765664200000100247430003728999999999999874-----865677201200120477999999 Q gi|254780336|r 238 FISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKE-----SPVIADIVVPIPDGGVPAAIGYAK 312 (488) Q Consensus 238 ~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~-----~~~~~DiV~~VPdsg~~aA~gya~ 312 (488) ..+.. +..+.++.++|+|||||||||||+++|++||++|++||++||++ .++++|+|+||||||++||+|||+ T Consensus 237 ~~~~~--~~~~~~~~~~C~FE~IYFaRpdS~~~g~~Vy~~R~~lG~~La~~~~~~~~~~~~dvV~~vPds~~~aA~g~a~ 314 (504) T 1ecf_A 237 QLFTR--QCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIAR 314 (504) T ss_dssp CEEEE--ECSSSCCCCCBHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHHHHTTTCCCCEEEECTTTTHHHHHHHHH T ss_pred CEEEE--ECCCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHH T ss_conf 68999--7457887765458999853786106783589999999999999866541687773653689954899999999 Q ss_pred HCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 81996001001176532101106446777653201343245533893289740353333388899999853997899996 Q gi|254780336|r 313 ESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 313 ~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +||+||+++|+||||+|||||+|+|++|+..|++||||++++|+||+|||||||||||||+|.||++||+|||||||||| T Consensus 315 ~~gip~~~~likn~y~gRtFI~p~~~~R~~~v~~Kl~~~~~~i~gk~ivlvDDSIVRGtT~k~ii~~Lr~aGakeIhvri 394 (504) T 1ecf_A 315 ILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLAS 394 (504) T ss_dssp HHTCCBCCCEEECSCCCCCCCCSSSCCCCCCSTTTEEECGGGTTTCCEEEEESCCSSSHHHHHHHHHHHHTTCSSEEEEE T ss_pred HCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHEECCCEEEEECCHHCCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 80963543024540115534487578876520002232342131362799753010264199999999976998899997 Q ss_pred CCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCC Q ss_conf 58980588656500589788854669998899987099778883398999861146666675673201213787668764 Q gi|254780336|r 393 ASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 (488) Q Consensus 393 ~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~ 472 (488) +||||+||||||||||+++||||++ +++|||+++||||||.|||+|+|++||+..+ +..++||+|||||+|||+..| T Consensus 395 ~sPpi~~pc~yGiD~p~~~eLia~~-~~~eei~~~igadsl~yls~e~l~~ai~~~~--~~~~~~c~~cftG~Yp~~~~~ 471 (504) T 1ecf_A 395 AAPEIRFPNVYGIDMPSATELIAHG-REVDEIRQIIGADGLIFQDLNDLIDAVRAEN--PDIQQFECSVFNGVYVTKDVD 471 (504) T ss_dssp SSCCCCSCCCSSCCCCCGGGCTTTT-CCHHHHHHHHTCSEEEECCHHHHHHHHHTTC--TTCCCCBCHHHHCCCTTSCCC T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCCCC--CCCCCCCCEEECCEECCCCCC T ss_conf 7898578754525799978986469-9999999985998799645999999865778--876770223454631499979 Q ss_pred HHHHHHHHHH Q ss_conf 5567446666 Q gi|254780336|r 473 KQSQHNDEEL 482 (488) Q Consensus 473 ~~~~~~~~~~ 482 (488) +.++..+|++ T Consensus 472 ~~~~~~~e~~ 481 (504) T 1ecf_A 472 QGYLDFLDTL 481 (504) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8999999986 No 2 >1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Probab=100.00 E-value=0 Score=1155.10 Aligned_cols=458 Identities=46% Similarity=0.781 Sum_probs=433.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCCC Q ss_conf 65999981853368999999877315887027999979969998048716763150444320687678987512226898 Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQ 94 (488) Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~~ 94 (488) |||||++++++++..+++||++|||||||||||++.++++++.+|++|+|+++|++ ..++.++|+++|||+||||+|.+ T Consensus 1 CGI~Gi~~~~~~~~~l~~gL~~LQHRGqDsaGIa~~d~~~i~~~K~~G~v~~~f~~-~~~~~l~G~~gIGH~RysT~G~~ 79 (459) T 1ao0_A 1 CGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQN-GELSKVKGKGAIGHVRYATAGGG 79 (459) T ss_dssp CEEEEEESCTBHHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTS-SCTTTCCBSEEEEEEECCC---- T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHHCC-CCHHCCCCCEEEEEEECCCCCCC T ss_conf 96999989953199999999986146734345999809989999578858886410-21211788589998675567899 Q ss_pred CCCCCCCEEEEC-CCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEE Q ss_conf 600278678746-9971999996550878999999986498242343078988989873025670568999986530439 Q gi|254780336|r 95 IIRNVQPLFADL-QVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 (488) Q Consensus 95 ~~~n~QPf~~~~-~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Gays 173 (488) +.+|+|||+.++ ..+++++||||||+|+.+||++|+++|+.|+++||||++++++++....++.+++++++++++|+|| T Consensus 80 s~~naQP~~~~s~~~g~ialahNGnI~N~~eLr~~L~~~G~~f~s~sDtEvi~~li~~~~~~~~~~~i~~~~~~l~Gays 159 (459) T 1ao0_A 80 GYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYA 159 (459) T ss_dssp CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEE T ss_pred CCCCCCCCEECCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE T ss_conf 87677898602489971999982799888999999997699563246507788999985231036777789984157217 Q ss_pred EEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCC Q ss_conf 99963997999982566541599826956999861200104787412331787079994089847998753077656642 Q gi|254780336|r 174 MLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPER 253 (488) Q Consensus 174 lv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~ 253 (488) +++++++.++++|||+|+|||+||+.++.|++|||||||+.+|++++|||+|||+++++ ++|..+. +..+..+.+ T Consensus 160 l~il~~~~~~~~RDp~GirPL~~G~~~~~~~vASEs~Al~~lg~~~i~ev~PGEiv~i~--~~g~~~~---~~~~~~~~~ 234 (459) T 1ao0_A 160 FLIMTETEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVGATYLREVEPGEMLIIN--DEGMKSE---RFSMNINRS 234 (459) T ss_dssp EEEECSSEEEEEECTTCCSCCEEEEETTEEEEESSTHHHHHHTCEEEEECCTTEEEEEE--TTEEEEE---ESCSSCCCC T ss_pred EEEEECCCCEEEEECCCCCCEEEEEECCEEEEEECHHHHHHCCCEEEEECCCCEEEEEE--CCCCEEE---ECCCCCCCC T ss_conf 99983897689996489986799970996899951255642596699982898699994--6885343---036788766 Q ss_pred EEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEE Q ss_conf 00000100247430003728999999999999874865677201200120477999999819960010011765321011 Q gi|254780336|r 254 MCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFI 333 (488) Q Consensus 254 ~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI 333 (488) +|+|||||||||||+++|++||++|++||+.||++.++++|+|+||||||++||+|||+++|+||+++|+||||+||||| T Consensus 235 ~C~FE~iYfsrpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DvV~~VPds~~~aa~gya~~~gip~~~~likn~y~~RtFI 314 (459) T 1ao0_A 235 ICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFI 314 (459) T ss_dssp EEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHCCCCSEEECCTTTTHHHHHHHHHHHCCCBCCCEEECTTCCTTSC T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHCEEECCCHHHHCC T ss_conf 66178764036753115536999999999977333775782784257763888999998709971334242120143226 Q ss_pred ECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHH Q ss_conf 06446777653201343245533893289740353333388899999853997899996589805886565005897888 Q gi|254780336|r 334 EPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTAL 413 (488) Q Consensus 334 ~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eL 413 (488) +|+|+.|+..|++||||++++|+||+|||||||||||||+|.||+|||+|||||||||||||||+||||||||||+++|| T Consensus 315 ~p~~~~r~~~v~~k~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~~Gakevh~~~~sPpi~~pc~yGid~~~~~el 394 (459) T 1ao0_A 315 QPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEEL 394 (459) T ss_dssp CCCHHHHHHTCCSSEEECHHHHTTCEEEEEESCCSSSHHHHHHHHHHHHTTCSEEEEEESSCCCCSCCCSCTTTCCSSCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHH T ss_conf 97388999988766554487744670699953210130289999999747998899997889736765564678997899 Q ss_pred HHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHH Q ss_conf 5466999889998709977888339899986114666667567320121378766876455674466 Q gi|254780336|r 414 LANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDE 480 (488) Q Consensus 414 ia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~ 480 (488) ||++ +++|||+++||||||.|||+|+|++||+. +.+....++|++||||+|||++++++....+| T Consensus 395 ia~~-~~~eei~~~ig~dsl~y~s~e~l~~a~~~-~~~~~~~~~c~~cftG~yp~~~~~~~~~~~~~ 459 (459) T 1ao0_A 395 IASS-HSVEEIRQEIGADTLSFLSVEGLLKGIGR-KYDDSNCGQCLACFTGKYPTEIYQDTVLPHVK 459 (459) T ss_dssp STTT-SCHHHHHHHHTCSEEEECCHHHHHHHHTC-CCSSTTTTEECHHHHSCCSSCCCSSCCCGGGC T ss_pred HHCC-CCHHHHHHHHCCCEEEECCHHHHHHHHCC-CCCCCCCCCCCEEECCCCCCCCCCHHHHHHCC T ss_conf 7579-99999999869987996279999998576-55776667376762783268897466574349 No 3 >2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* Probab=100.00 E-value=0 Score=383.54 Aligned_cols=259 Identities=25% Similarity=0.375 Sum_probs=207.9 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 65999981853368999999877315887027999979-96999804871676315044432068767898751222689 Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNG-NKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488) Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~-~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488) |||||+++++++...+++||.+|||||||||||++.++ +++...|+.|+|++++++ ...+.++|++|||||||+|+|. T Consensus 1 CGI~g~~~~~~~~~~~~~gl~~L~~RG~dsaGia~~~~~~~i~~~k~~g~v~~~~~~-~~~~~~~g~~~igHtR~aT~G~ 79 (608) T 2bpl_A 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQA-AEEHPLHGGTGIAHTRWATHGE 79 (608) T ss_dssp CEEEEEECSSCCHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHH-HHHSCCCCSEEEEEEECCCSSS T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHH-HHCCCCCCCEEEEECCCCCCCC T ss_conf 969999837648999999999840647223669999289978999558888999735-3013689988886777778999 Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCC Q ss_conf 86002786787469971999996550878999999986498242343078988989873025--6705689999865304 Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKN--GSCDRFIDSLRHVQGA 171 (488) Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~--~~~e~i~~~l~~l~Ga 171 (488) ++..|+||+.. +++++||||+|+||.+||++|+++|+.|+|+||||||+||+.+.... ++.+++.+++++++|+ T Consensus 80 ~~~~nahP~~~----~~~~~vhNG~i~N~~~lr~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~~~a~~~~~~~l~G~ 155 (608) T 2bpl_A 80 PSEVNAHPHVS----EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGA 155 (608) T ss_dssp CCGGGCSCEEE----TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSS T ss_pred CCCCCCCCCCC----CCEEEEECCCHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC T ss_conf 87458999725----99999978703389999999985798056663088998989876503763689999999845572 Q ss_pred EEEEEEEC---CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 39999639---979999825665415998269569998612001047874123317870799940898479987530776 Q gi|254780336|r 172 YAMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 (488) Q Consensus 172 yslv~l~~---~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~ 248 (488) ||+++++. +.++++|. .+||++|+.++.+++|||.+||....-+++ .+++||++++. .++.. +......+ T Consensus 156 ~a~~~~~~~~p~~i~~~r~---gsPL~iG~~~~~~~vaSd~~al~~~t~~~~-~l~dgei~~i~--~~~~~-i~~~~~~~ 228 (608) T 2bpl_A 156 YGTVIMDSRHPDTLLAARS---GSPLVIGLGMGENFIASDQLALLPVTRRFI-FLEEGDIAEIT--RRSVN-IFDKTGAE 228 (608) T ss_dssp EEEEEEETTCTTCEEEEEE---BSCCEEEECSSCEEEESSGGGTTTTCCEEE-ECCTTCEEEEC--SSCEE-EECSSSCB T ss_pred EEEEEEECCCCCEEEEECC---CCCEEEEECCCCEEEECCHHHHHHHCCEEE-EECCCCEEEEE--ECCCE-EECCCCCC T ss_conf 2599985599988999989---997699972897499567144454257499-90799689997--41305-63022344 Q ss_pred CCCCCEEEEEHHC--CCC-CCCCCCCHHHHHHHHHHHHHHH Q ss_conf 5664200000100--247-4300037289999999999998 Q gi|254780336|r 249 TSPERMCIFEYVY--FAR-PDSIISGRSIYVSRRNMGKNLA 286 (488) Q Consensus 249 ~~~~~~C~FEyIY--Far-pdS~~~g~~Vy~~R~~lG~~La 286 (488) ..+... ..++-. -.+ +-.-+--+.+|+--..+.+.|. T Consensus 229 ~~~~~~-~~~~~~~~~~kg~y~hfm~KEI~EQp~~i~~~l~ 268 (608) T 2bpl_A 229 VKRQDI-ESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLT 268 (608) T ss_dssp CCCCCE-ECCSCTTTTCCTTCSSHHHHHHHTHHHHHHHHHT T ss_pred CCCCEE-EEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHHC T ss_conf 554059-9723421122567268887656347377764430 No 4 >1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Probab=100.00 E-value=0 Score=380.41 Aligned_cols=219 Identities=25% Similarity=0.388 Sum_probs=193.6 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 65999981853368999999877315887027999979-96999804871676315044432068767898751222689 Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNG-NKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488) Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~-~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488) |||||++++++++..+++||.+|||||||||||+++++ +.+..+|+.|.+.+++.. ...+.++|+++|||+||+|.|. T Consensus 1 CGI~Gi~~~~~~~~~l~~~L~~LqhRG~DsaGi~~~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~g~~~iGH~R~aT~g~ 79 (240) T 1xff_A 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQA-AEEHPLHGGTGIAHTRWATHGE 79 (240) T ss_dssp CEEEEEECSSCCHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHH-HHHSCCCCSEEEEEEECCSSSC T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHH-HHCCCCCCCEEEEECCCCCCCC T ss_conf 949999999206999999998625558372568999189979999614653101112-2114668857887511333698 Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHCC Q ss_conf 860027867874699719999965508789999999864982423430789889898730--256705689999865304 Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQ--KNGSCDRFIDSLRHVQGA 171 (488) Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~--~~~~~e~i~~~l~~l~Ga 171 (488) .+..|+||+.. ++++++|||+|+|+.+||++|+++|+.|++++|||+|++|+++.. ..++.+++.+++++++|+ T Consensus 80 ~s~~n~~P~~~----~~~~~vhNG~I~N~~~L~~~l~~~g~~f~s~~DtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G~ 155 (240) T 1xff_A 80 PSEVNAHPHVS----EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGA 155 (240) T ss_dssp SSTTTSSCEEE----TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEE T ss_pred CCCCCCCCCCC----CCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC T ss_conf 75457760027----98999983588779999999997699644467779999999999873989999999999872585 Q ss_pred EEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEE Q ss_conf 3999963997999982566541599826956999861200104787412331787079994089847998 Q gi|254780336|r 172 YAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISI 241 (488) Q Consensus 172 yslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i 241 (488) ||+++++.+....+||+.|.||||||+.++.++||||++||..++.+++ .|+|||++. ++.++...+ T Consensus 156 ~a~~i~~~~~~~~i~~~r~~rPL~~g~~~~~~~~aSE~~al~~~~~~~~-~l~~gei~~--i~~~~i~i~ 222 (240) T 1xff_A 156 YGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFI-FLEEGDIAE--ITRRSVNIF 222 (240) T ss_dssp EEEEEEETTCTTCEEEEEEBSCCEEEECSSCEEEESSGGGTTTTCSEEE-ECCTTCEEE--ECSSCEEEE T ss_pred CEEHHHCCCCCCEEEEECCCCCEEEEECCCCCEECCCHHHHHHHCCEEE-EECCCEEEE--ECCCEEEEE T ss_conf 3102013799888999889984499976886503163687886276799-978985999--908979999 No 5 >1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Probab=100.00 E-value=8.7e-31 Score=237.60 Aligned_cols=240 Identities=24% Similarity=0.290 Sum_probs=169.3 Q ss_pred EEEEEECCCC-H---HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCC Q ss_conf 5999981853-3---68999999877315887027999979969998048716763150444320687678987512226 Q gi|254780336|r 16 GVFGILGHPD-A---ATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTT 91 (488) Q Consensus 16 GI~Gi~~~~~-~---~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~ 91 (488) ||+||++... . ...+..|..+|+|||+|+.|+.. .+++++||+|.|+. T Consensus 2 ~I~gi~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~----------------------------~~~~~lgh~RLsI~ 53 (553) T 1ct9_A 2 SIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYA----------------------------SDNAILAHERLSIV 53 (553) T ss_dssp EEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEE----------------------------CSSEEEEEEECCCS T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE----------------------------ECCEEEEEEEEEEC T ss_conf 39999937888088999999999985275998888698----------------------------49989999733221 Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC Q ss_conf 89860027867874699719999965508789999999864982423430789889898730256705689999865304 Q gi|254780336|r 92 GDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGA 171 (488) Q Consensus 92 G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Ga 171 (488) +.+. ..|||. +..+++++++||+|+|+.+||++|. .++.|.|+||||||++++.+.- .+++++++|. T Consensus 54 d~~~--g~QP~~--~~~~~~~lv~NGEIYN~~eLr~~L~-~~~~f~t~sDtEvll~ly~~~G--------~~~~~~L~Gm 120 (553) T 1ct9_A 54 DVNA--GAQPLY--NQQKTHVLAVNGEIYNHQALRAEYG-DRYQFQTGSDCEVILALYQEKG--------PEFLDDLQGM 120 (553) T ss_dssp CTTT--CCSSEE--CTTSCEEEEEEEEETTHHHHHHHHT-TTSCCCSCCTTHHHHHHHHHHT--------TTTGGGCCEE T ss_pred CCCC--CCCCCC--CCCCCEEEEEEEEEECHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHC--------HHHHHHHCCC T ss_conf 7998--999886--4999989999989706899999885-4897178985999999999979--------8999982671 Q ss_pred EEEEEEEC--CEEEEEEECCCCCEEEEEECCCEEEE-EECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCC Q ss_conf 39999639--97999982566541599826956999-8612001047874123317870799940898479987530776 Q gi|254780336|r 172 YAMLALTR--TKLIATRDPIGIRPLIMGELHGKPIF-CSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 (488) Q Consensus 172 yslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~~v~-ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~ 248 (488) ||+++.+. ++++++||++|+|||+|+..+++.+| +||..++. ..+..++.+.||..+.. .+|......+.. T Consensus 121 FAfai~D~~~~~l~laRD~~GiKPLyy~~~~~~~~f~s~~~~~l~-~~~~~~~~~ppg~~~~~---~~g~~~~~~~~~-- 194 (553) T 1ct9_A 121 FAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALV-PVCRTIKEFPAGSYLWS---QDGEIRSYYHRD-- 194 (553) T ss_dssp EEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTT-TTCSEEEECCTTEEEET---TTCSEEECCCCG-- T ss_pred EEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEECHHHHCCC-CCCCCEEECCCCEEEEE---CCCCEEEEECCC-- T ss_conf 799998066756999747752111068863798054201220124-21131265277338984---189611430123-- Q ss_pred CCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHHHHHCC Q ss_conf 5664200000100247430003728999999999999874865677---201200120477999999819 Q gi|254780336|r 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD---IVVPIPDGGVPAAIGYAKESG 315 (488) Q Consensus 249 ~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D---iV~~VPdsg~~aA~gya~~~g 315 (488) ++..+...-....+...|..+-....+.-..+.. ..+|=-||+..+|+. ++... T Consensus 195 ------------~~~~~~~~~~~~~~~~~~~lL~~aV~~rl~sdvpvg~~LSGGlDSSlIaal~-~k~~~ 251 (553) T 1ct9_A 195 ------------WFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAIT-KKYAA 251 (553) T ss_dssp ------------GGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHH-HHHC- T ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH-HHHHC T ss_conf ------------3444445430556999999999997556508875147736997439999999-98631 No 6 >3mdn_A Glutamine amidotransferases class-II domain prote; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Probab=100.00 E-value=4.6e-32 Score=246.71 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=161.1 Q ss_pred HCCEEEEEECCCC-HHHHHHHHHHHH---HCC-----CC---CEEEEEEEEC-CEEEEEECCCCH-HH-HCCCHHHHHHC Q ss_conf 1565999981853-368999999877---315-----88---7027999979-969998048716-76-31504443206 Q gi|254780336|r 13 EKCGVFGILGHPD-AATLTAIGLHAL---QHR-----GQ---EATGIISFNG-NKFHSERHLGLV-GD-HFTKPETLSLL 77 (488) Q Consensus 13 ~eCGI~Gi~~~~~-~~~~~~~gL~~L---QHR-----Gq---dsaGIa~~d~-~~i~~~K~~GlV-~d-vf~~~~~l~~l 77 (488) .||+|+|+.+.+. +...++...++| ++| |. |||||+++++ +....+|..... .+ .| ....+.+ T Consensus 2 ~MCri~g~~g~~~~~~~~l~~~~~sl~~qs~~~~~~~~~~~~DGwGia~y~~~~~~~~~~~~~~a~~d~~~--~~~~~~~ 79 (274) T 3mdn_A 2 SLCRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDVYPAWSDPNL--RAVAHHV 79 (274) T ss_dssp --CCEEEEEEEEEEGGGTC------------------------CEEEEEESSSSSCEEEEESSCGGGCHHH--HHHHHHC T ss_pred CCCCEEEEECCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHH--HHHHHCC T ss_conf 52438999889625677764612478884120024576416987879999699968999647444328657--8765346 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC-----CCCCCCCCHHHHHHHHHHH Q ss_conf 87678987512226898600278678746997199999655087899999998649-----8242343078988989873 Q gi|254780336|r 78 PGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG-----AIFQSTSDTEVILHLIARS 152 (488) Q Consensus 78 ~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g-----~~f~s~sDTEvI~~Li~~~ 152 (488) ++.++|||+||+|.|..+.+|+|||.. +++++||||+|.|+.+||++|.... ..+.++||||++++++... T Consensus 80 ~s~~~igH~R~AT~G~~~~~N~HPF~~----~~~~faHNG~i~n~~~lr~~L~~~~~~~~~~~~~g~TDSE~~f~~ll~~ 155 (274) T 3mdn_A 80 RSGLFLSHVRASTGSCISRNNCHPFAA----RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSE 155 (274) T ss_dssp EEEEEEEEC------------CCCEEE----TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHT T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEE----CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 775899999626678987346698473----8999997675259999999998333743344567760799999999998 Q ss_pred -CCCCCCHHHHHHHHHHHC-----------CEEEEEEECCEEEEEEECCCCCEEEEE----ECCCEEEEEECCHHCCCCC Q ss_conf -025670568999986530-----------439999639979999825665415998----2695699986120010478 Q gi|254780336|r 153 -QKNGSCDRFIDSLRHVQG-----------AYAMLALTRTKLIATRDPIGIRPLIMG----ELHGKPIFCSETCALEITG 216 (488) Q Consensus 153 -~~~~~~e~i~~~l~~l~G-----------ayslv~l~~~~l~~~RDp~GiRPL~~G----~~~~~~v~ASEs~Al~~ig 216 (488) ...+..+.+.+++..+.+ ++++++.+++.||++||+.|.||++++ ..++.++||||+++++. T Consensus 156 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~n~ll~dg~~l~a~r~~~~~~p~~l~~~~~~~~~~~~vaSE~l~~~~-- 233 (274) T 3mdn_A 156 GLEHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEPLETDE-- 233 (274) T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECSSCEEEEEEESSSCCCCCEEEEETTTTEEEEESSCC--CC-- T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCCCC-- T ss_conf 753897788999999999988753425663068997479989999868998774010034048988999978760798-- Q ss_pred CCEEEECCCCEEEEEEECCCCEEEEEEE Q ss_conf 7412331787079994089847998753 Q gi|254780336|r 217 AKYIRDVENGETIVCELQEDGFISIDSY 244 (488) Q Consensus 217 ~~~irdv~PGEiivi~~~~~g~~~i~~~ 244 (488) +.+++|+|||+++++ .+|... +.+ T Consensus 234 -~~W~~v~~ge~l~v~--~~g~~~-~~~ 257 (274) T 3mdn_A 234 -GDWTELRPGRMLTIG--AEGAAE-RDF 257 (274) T ss_dssp -SCCEECCSSEEEEEE--TTEEEE-EEC T ss_pred -CCEEEECCCEEEEEE--CCCEEE-EEC T ss_conf -897997998089996--896699-952 No 7 >1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Probab=99.97 E-value=8.5e-32 Score=244.79 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=145.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCC------CCEEEEEEEECCEEEEEECCCC--HHHHCCCHHHHHHCCCCEEEEE Q ss_conf 5659999818533689999998773158------8702799997996999804871--6763150444320687678987 Q gi|254780336|r 14 KCGVFGILGHPDAATLTAIGLHALQHRG------QEATGIISFNGNKFHSERHLGL--VGDHFTKPETLSLLPGNMAIGH 85 (488) Q Consensus 14 eCGI~Gi~~~~~~~~~~~~gL~~LQHRG------qdsaGIa~~d~~~i~~~K~~Gl--V~dvf~~~~~l~~l~G~~~IGH 85 (488) ||||||+.++.... +..+|..||||| +|||||++++++.+.++|..+. .+++|.. .....++|+++||| T Consensus 1 MCrl~g~~~~~p~~--~~~~l~~l~~rg~~~~~~~DGwGia~~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~s~~~igH 77 (257) T 1te5_A 1 MCELLGMSANVPTD--IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARL-VQRFPIKSETVIGH 77 (257) T ss_dssp -CCEEEEEEEEEEE--CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHH-HHHSCCEEEEEEEE T ss_pred CCCEEEEECCCCHH--HHHHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCHHHHH-HHHCCCCCCEEEEE T ss_conf 98289998699615--9999999986788678888736999997993799982764403555666-64166678579999 Q ss_pred EECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-----CCCC-- Q ss_conf 512226898600278678746997199999655087899999998649824234307898898987302-----5670-- Q gi|254780336|r 86 VRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK-----NGSC-- 158 (488) Q Consensus 86 vRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~-----~~~~-- 158 (488) +||+|.|..+.+|+|||...+..+.++++|||+|+|+.+|+..|. +..++|||.+.+++..... .... T Consensus 78 vR~aT~G~~~~~n~hPf~~~~~~~~~~~aHNG~i~n~~~l~~~l~-----~~g~tdse~~~~~ll~~l~~~~~~~~~~~~ 152 (257) T 1te5_A 78 IRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYR-----PVGETDSEAAFCDLLNRVRRAFPEPVPVEV 152 (257) T ss_dssp EEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCSSC-----CSSCCHHHHHHHHHHHHHHHHCSSCCCHHH T ss_pred EEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEEECCHHHHHHHE-----EECCCCCCCCHHHHHHHHHHHCCCCCCHHH T ss_conf 850456887645678867965998899998577845367645335-----125456715399999999973887772889 Q ss_pred --HHHHHHHHHHHCCEEE--EEEECCEEEEE--------EECCCCCEEEEEEC-------------CCEEEEEECCHHCC Q ss_conf --5689999865304399--99639979999--------82566541599826-------------95699986120010 Q gi|254780336|r 159 --DRFIDSLRHVQGAYAM--LALTRTKLIAT--------RDPIGIRPLIMGEL-------------HGKPIFCSETCALE 213 (488) Q Consensus 159 --e~i~~~l~~l~Gaysl--v~l~~~~l~~~--------RDp~GiRPL~~G~~-------------~~~~v~ASEs~Al~ 213 (488) +.+...++.+.+.+++ ++.+++.++++ +++.+..|+.+... +..++||||. |+ T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvASEp--l~ 230 (257) T 1te5_A 153 LLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LT 230 (257) T ss_dssp HHHHHHHHHHHHHTTBCCEEEEESSSCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SS T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCCCEEECCCCCCEEEECCCCCCCCEEEEEECC--CC T ss_conf 9999999998641252799976177669999559924999358987401026886377751102899789999152--47 Q ss_pred CCCCCEEEECCCCEEEEEE Q ss_conf 4787412331787079994 Q gi|254780336|r 214 ITGAKYIRDVENGETIVCE 232 (488) Q Consensus 214 ~ig~~~irdv~PGEiivi~ 232 (488) +.+.+++|+|||+++++ T Consensus 231 --~~~~w~~l~~Ge~vv~~ 247 (257) T 1te5_A 231 --DNENWTLQQSGEWVLWW 247 (257) T ss_dssp --SSSSCEEECTTCEEEEE T ss_pred --CCCCEEEECCCEEEEEE T ss_conf --99898996998499998 No 8 >1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Probab=99.95 E-value=2.2e-27 Score=213.32 Aligned_cols=202 Identities=20% Similarity=0.186 Sum_probs=146.6 Q ss_pred CCCEEEEEEECCCCCCCC------CCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 876789875122268986------00278678746997199999655087899999998649824234307898898987 Q gi|254780336|r 78 PGNMAIGHVRYSTTGDQI------IRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIAR 151 (488) Q Consensus 78 ~G~~~IGHvRYsT~G~~~------~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~ 151 (488) .|..+|||.|+++..... ...+||+ ..|++++++||+|+|+.+||++| +..|.|+||||||++++.+ T Consensus 36 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvfNGEIYN~~eLr~~l---~~~f~t~sDtEvil~ly~~ 108 (513) T 1jgt_A 36 DIDTPQGERSLAATLVHAPSVAPDRAVARSL----TGAPTTAVLAGEIYNRDELLSVL---PAGPAPEGDAELVLRLLER 108 (513) T ss_dssp ECCCTTGGGSCEEEEEECTTSCGGGGEEEEC----SSSSEEEEEEEEESCHHHHHHTS---CSSCCCSSHHHHHHHHHHH T ss_pred CCCEEECCCEEEEEECCCCCCCCCCCCCCCC----CCCCEEEEEEEECCCHHHHHHHH---CCCCCCCCHHHHHHHHHHH T ss_conf 7773122331455513666668764446757----89999999976603899999985---8888999859999999999 Q ss_pred HCCCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCC---------------C Q ss_conf 3025670568999986530439999639979999825665415998269569998612001047---------------8 Q gi|254780336|r 152 SQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEIT---------------G 216 (488) Q Consensus 152 ~~~~~~~e~i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i---------------g 216 (488) .- .+++++++|.||+++.++++++++||++|+|||+|+..++.++||||-.||-.. . T Consensus 109 ~G--------~~~l~~L~GmFAfai~D~~~l~laRD~~GiKPLyy~~~~~~~~FaSEikaL~~~~~~~~~~~~~~~~~t~ 180 (513) T 1jgt_A 109 YD--------LHAFRLVNGRFATVVRTGDRVLLATDHAGSVPLYTCVAPGEVRASTEAKALAAHRDPKGFPLADARRVAG 180 (513) T ss_dssp HG--------GGGGGTCCEEEEEEEEETTEEEEEECTTCCSCCEEEEETTEEEEESCHHHHHTC--CCCCCCTTSEECSS T ss_pred HH--------HHHHHHCCEEEEEEEEECCEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCCCCCCCCCHHHCCC T ss_conf 73--------8899771814799999899999998889885759998699689996578897476643464210010103 Q ss_pred CCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-- Q ss_conf 741233178707999408984799875307765664200000100247430003728999999999999874865677-- Q gi|254780336|r 217 AKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD-- 294 (488) Q Consensus 217 ~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D-- 294 (488) ++.|+.|+||+++.++.++ +......+..+...+. ..-+...+.+.|..+-+...+.-..+.. T Consensus 181 f~~I~~lpPG~~l~i~~~~-~~~~~~~yw~~~~~~~--------------~~~~~e~~~~l~~~L~~aV~~rl~sd~~vg 245 (513) T 1jgt_A 181 LTGVYQVPAGAVMDIDLGS-GTAVTHRTWTPGLSRR--------------ILPEGEAVAAVRAALEKAVAQRVTPGDTPL 245 (513) T ss_dssp CSSCEECCTTEEEEEETTT-TEEEEEECCCCCCSCB--------------CCCHHHHHHHHHHHHHHHHHHHSCTTCCCE T ss_pred CCCEEEECCCEEEEEECCC-CCCCEEECCCCCCCCC--------------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCE T ss_conf 0536980794699851367-7530353156543335--------------799899999999999877776335788876 Q ss_pred -CCCCCCCCHHHHHHH Q ss_conf -201200120477999 Q gi|254780336|r 295 -IVVPIPDGGVPAAIG 309 (488) Q Consensus 295 -iV~~VPdsg~~aA~g 309 (488) ..+|=-||+..+|+. T Consensus 246 ~~LSGGlDSSlIaala 261 (513) T 1jgt_A 246 VVLSGGIDSSGVAACA 261 (513) T ss_dssp EECCSSHHHHHHHHHH T ss_pred EECCCCCCHHHHHHHH T ss_conf 9778983449999987 No 9 >1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Probab=99.92 E-value=1.8e-24 Score=192.70 Aligned_cols=207 Identities=13% Similarity=0.050 Sum_probs=137.7 Q ss_pred CEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCH Q ss_conf 67898751222689860027867874699719999965508789999999864982423430789889898730256705 Q gi|254780336|r 80 NMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCD 159 (488) Q Consensus 80 ~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e 159 (488) ..+++|.|....+.. ..|||..+ +.++++||+|+|+.+||++|...|+.|.|.||||||++++.+.- T Consensus 27 ~~~l~~~~l~i~~~~---~~QP~~~~----~~~~~~nGEIYN~~eLr~~l~~~~~~f~t~SDtEVll~ly~~~G------ 93 (503) T 1q15_A 27 GEALSNGYLFIEQNG---HYQKCEME----RGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG------ 93 (503) T ss_dssp EEEETTEEEEEETTC---CEEEEECS----SSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC------ T ss_pred CEEECCCEEEEECCC---CCCCCCCC----CEEEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH------ T ss_conf 103115558983588---87996769----98999999861899999999757985588985999999999985------ Q ss_pred HHHHHHHHHHCCEEEEEEEC-CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCC---------------------- Q ss_conf 68999986530439999639-9799998256654159982695699986120010478---------------------- Q gi|254780336|r 160 RFIDSLRHVQGAYAMLALTR-TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITG---------------------- 216 (488) Q Consensus 160 ~i~~~l~~l~Gayslv~l~~-~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig---------------------- 216 (488) .+++++++|+||+++.+. ++++++||++|+|||+|.+.++.+++|||..++...+ T Consensus 94 --~~~l~~L~GmFAfai~~~~~~l~laRD~~G~KPLYY~~~~~~~~~Ss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (503) T 1q15_A 94 --ANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTY 171 (503) T ss_dssp --GGGGGGCCSSEEEEEECTTSCEEEEECSSSSSCCEEEESSSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTC T ss_pred --HHHHHHHCEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC T ss_conf --888977077789999968995999986788745799956987998464789744776666636578999745688998 Q ss_pred --CCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf --741233178707999408984799875307765664200000100247430003728999999999999874865677 Q gi|254780336|r 217 --AKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD 294 (488) Q Consensus 217 --~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D 294 (488) ++.|+.|+||++++++.+..+......+........ ...+.-...-+...|..+-...... ...| T Consensus 172 T~f~~I~~l~PG~~l~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~e~~~~~~~~~l~~av~~~--l~sd 238 (503) T 1q15_A 172 TPVKNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASN-----------QLLALPREPLLALIDRYLNAPLEDL--APRF 238 (503) T ss_dssp CSBTTEEECCSSEEEEEEECTTCCEEEEEEESCCCCCC-----------SCBCCCHHHHHHHHHHHHHHHHHHH--GGGC T ss_pred CCCCCCEECCCCCEEEEECCCCEEEEEECCCCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH--CCCC T ss_conf 87767266488735999538830343201234564322-----------1246899999999999999999996--2689 Q ss_pred CCC-----CCCCCHHHHHHHHHHHCCC Q ss_conf 201-----2001204779999998199 Q gi|254780336|r 295 IVV-----PIPDGGVPAAIGYAKESGI 316 (488) Q Consensus 295 iV~-----~VPdsg~~aA~gya~~~gi 316 (488) +-+ |==||+.++|+ +...+. T Consensus 239 ~pvg~~LSGGlDSSlIaal--a~~~~~ 263 (503) T 1q15_A 239 DTVGIPLSGGLDSSLVTAL--ASRHFK 263 (503) T ss_dssp SEEEEECCSSHHHHHHHHH--HTTTCS T ss_pred CCEEEEECCCCCHHHHHHH--HHHHCC T ss_conf 8568980587427999999--875135 No 10 >1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A* Probab=99.89 E-value=1.6e-25 Score=200.16 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=156.2 Q ss_pred EEEECCCCCEEEEEECCCEEEEE----ECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEH Q ss_conf 99825665415998269569998----61200104787412331787079994089847998753077656642000001 Q gi|254780336|r 184 ATRDPIGIRPLIMGELHGKPIFC----SETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEY 259 (488) Q Consensus 184 ~~RDp~GiRPL~~G~~~~~~v~A----SEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEy 259 (488) ....|++++||.+.. +.|..| ||+.++-.-.++ +...|++..+.-...|.+-+ .......+.|.||+ T Consensus 16 l~~~p~~~~~l~~~~--~~~~~aks~iSed~~i~~~~~~---~~~~g~i~~~~g~~gg~~~i----p~~~~~~~~~~~~~ 86 (291) T 1o57_A 16 LLTHPHELIPLTFFS--ERYESAKSSISEDLTIIKQTFE---QQGIGTLLTVPGAAGGVKYI----PKMKQAEAEEFVQT 86 (291) T ss_dssp HHTSTTCCBCHHHHH--HHTTCCHHHHHHHHHHHHHHHH---HTTSEEEEEECSTTCEEEEE----ECCCHHHHHHHHHH T ss_pred HHCCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH---HCCCCEEEEECCCCEEEEEE----CCCCHHHHHHHHHH T ss_conf 971998626389999--9861201133018999999875---44887099968974169996----78887889999999 Q ss_pred H--CCCCCCCCCCCHHHH--------HHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCC Q ss_conf 0--024743000372899--------9999999999874-8656772012001204779999998199600100117653 Q gi|254780336|r 260 V--YFARPDSIISGRSIY--------VSRRNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYV 328 (488) Q Consensus 260 I--YFarpdS~~~g~~Vy--------~~R~~lG~~La~~-~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~ 328 (488) + ||+|||+++.|..+| +.++++|+.||++ .+.++|+|+++|.+|+|.|..+|.++|+||..+..+|++. T Consensus 87 l~~~l~~~~rilpG~~vy~s~ll~dP~~l~~lG~~lA~~~~~~~iD~Vvgv~~~GiplA~~vA~~LgvP~v~~rk~~k~~ 166 (291) T 1o57_A 87 LGQSLANPERILPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVT 166 (291) T ss_dssp HHHHHTCGGGEETTTEECCTTTTTCHHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHHHHHHHHHTCCEEEEBCC---- T ss_pred HHHHHCCCCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 99996599952588568756640699999999999999737789979993175669999999999699979999604778 Q ss_pred CCEEEECCHHHHHHHHHHCCCCCH-HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 210110644677765320134324-55338932897403533333888999998539978999965 Q gi|254780336|r 329 GRTFIEPSHHIRAFGVKLKHSANR-TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 329 gRtFI~p~~~~R~~~v~~K~~~~~-~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +++|+.+++..+......+++..+ ...+|+||+||||+|.+|+|++.++++||++||+-+.+.+- T Consensus 167 ~~~~i~~~~~s~~~~~~~~~~~~~~~l~~g~rVLIVDDvi~tG~T~~~~i~llre~GA~vvgi~Vl 232 (291) T 1o57_A 167 EGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVL 232 (291) T ss_dssp -CCEEEEEEECSSCCSEEEEEEEGGGSCTTCEEEEEEEEESSSHHHHHHHHHTGGGTCEEEEEEEE T ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 985699988714476422565112335788569984242332778999999999879979999999 No 11 >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Probab=99.73 E-value=2e-15 Score=128.25 Aligned_cols=198 Identities=19% Similarity=0.148 Sum_probs=127.6 Q ss_pred HHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHH---HCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEE Q ss_conf 99999987731588702799997996999804871676---315044432068767898751222689860027867874 Q gi|254780336|r 29 LTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGD---HFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFAD 105 (488) Q Consensus 29 ~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~d---vf~~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~ 105 (488) .+|..-..+.++=.+..=|+++.... .++|++.+..+ .|.+.. -..++..++|.|.||||+..++|.-+|||- T Consensus 147 ~Ly~~Rk~ie~~~~~~fYi~SLSs~T-IVYKGm~~~~qL~~fY~DL~-dp~~~S~~al~H~RFSTNTfPsW~lAQPfR-- 222 (1520) T 1ofd_A 147 RLYIARSIIGKKLAEDFYVCSFSCRT-IVYKGMVRSIILGEFYLDLK-NPGYTSNFAVYHRRFSTNTMPKWPLAQPMR-- 222 (1520) T ss_dssp HHHHHHHHHGGGCBTTBEEEEEESSE-EEEEESSCHHHHHHHBHHHH-CTTCCBSEEEEEECCCSSSCCCGGGSSCCS-- T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCC-EEECCCCCHHHHHHHCHHCC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCC-- T ss_conf 99999999998754787983267781-68757888789867351018-976589898178776788899854024161-- Q ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHC------------------CCCCCCCCCHHHH---HHHHHHH------------ Q ss_conf 699719999965508789999999864------------------9824234307898---8989873------------ Q gi|254780336|r 106 LQVGGIAIAHNGNFTNGLTLRKKLISS------------------GAIFQSTSDTEVI---LHLIARS------------ 152 (488) Q Consensus 106 ~~~g~iaiaHNGnI~N~~eLr~~L~~~------------------g~~f~s~sDTEvI---~~Li~~~------------ 152 (488) . |+|||+|.-..--+..+..+ -......|||.-+ +.+|.+. T Consensus 223 --~----laHNGEINTirGN~nWm~ARe~~l~s~~~~~~~~~~l~Pii~~g~SDSa~LDn~lE~Lv~~G~sl~~A~~mli 296 (1520) T 1ofd_A 223 --L----LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILV 296 (1520) T ss_dssp --S----EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHS T ss_pred --C----CEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC T ss_conf --0----3336077767668999999887602775463568636787898998379999999999984999899998748 Q ss_pred ---CCCC--CC--HHHHH-------HHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEEC-CCEEEEEECCHHCCCCCC Q ss_conf ---0256--70--56899-------998653043999963997999982566541599826-956999861200104787 Q gi|254780336|r 153 ---QKNG--SC--DRFID-------SLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGEL-HGKPIFCSETCALEITGA 217 (488) Q Consensus 153 ---~~~~--~~--e~i~~-------~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~-~~~~v~ASEs~Al~~ig~ 217 (488) +.++ .. ..++. .|.-|+|.-++++-+++.+.+.-|++|+||+.|..+ |+.+++|||.-.++. .- T Consensus 297 Peaw~~~~~m~~~pe~rafYeY~s~~mEPWDGPAaI~ftdG~~iga~LDRNGLRP~Ry~iT~D~~vi~aSE~Gvv~~-~~ 375 (1520) T 1ofd_A 297 PEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDL-PE 375 (1520) T ss_dssp CCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECSSEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCC-CG T ss_pred CHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCC-CH T ss_conf 62102898777448889999998600777777605676328778984035778724689973872787404676578-87 Q ss_pred CEEE---ECCCCEEEEEEECCCC Q ss_conf 4123---3178707999408984 Q gi|254780336|r 218 KYIR---DVENGETIVCELQEDG 237 (488) Q Consensus 218 ~~ir---dv~PGEiivi~~~~~g 237 (488) +.|. -+.||+++.+|..+.. T Consensus 376 ~~V~~kgrL~PG~mi~vD~~~gr 398 (1520) T 1ofd_A 376 VDIVEKGRLAPGQMIAVDLAEQK 398 (1520) T ss_dssp GGEEEEEECCTTCEEEEETTTTE T ss_pred HHEEECCCCCCCCEEEEECCCCE T ss_conf 88013677699868999854893 No 12 >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Probab=99.72 E-value=4.2e-16 Score=132.99 Aligned_cols=184 Identities=20% Similarity=0.191 Sum_probs=123.6 Q ss_pred EEEEEEEECCEEEEEECCCCHHH---HCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEC Q ss_conf 02799997996999804871676---315044432068767898751222689860027867874699719999965508 Q gi|254780336|r 44 ATGIISFNGNKFHSERHLGLVGD---HFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT 120 (488) Q Consensus 44 saGIa~~d~~~i~~~K~~GlV~d---vf~~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~ 120 (488) ..=|+.+.... .++|++.+..+ .|.+.. -..++..++|.|.||||+..++|.-+|||- . |+|||+|. T Consensus 166 ~fYi~SLSsrT-IVYKGml~~~qL~~fY~DL~-d~~f~S~~al~H~RFSTNT~PsW~lAQPfR----~----LaHNGEIN 235 (1479) T 1ea0_A 166 DFYICSLSARS-IIYKGMFLAEQLTTFYPDLL-DERFESDFAIYHQRYSTNTFPTWPLAQPFR----M----LAHNGEIN 235 (1479) T ss_dssp SCEEEEEESSE-EECCBSSCGGGHHHHCGGGG-STTCCBSEEEEEECCCSCSCCCSTTSSCCS----S----EEEEECCT T ss_pred CEEEECCCCCE-EEECCCCCHHHHHHHCHHHC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCC----C----CEECHHHH T ss_conf 67970377780-68836888789867453208-976588898177776688899864025160----0----33360888 Q ss_pred CHHHHHHHHHHCC-----------------CCCCCCCCHHHH---HHHHHHH---------------CC--CCCCHHHHH Q ss_conf 7899999998649-----------------824234307898---8989873---------------02--567056899 Q gi|254780336|r 121 NGLTLRKKLISSG-----------------AIFQSTSDTEVI---LHLIARS---------------QK--NGSCDRFID 163 (488) Q Consensus 121 N~~eLr~~L~~~g-----------------~~f~s~sDTEvI---~~Li~~~---------------~~--~~~~e~i~~ 163 (488) -..-.+..+..+. ..-...|||..+ +.++.+. +. ....+.++. T Consensus 236 Ti~GN~nwm~ARe~~l~s~~~g~~~~~l~Pii~~~~SDSa~LDn~lE~Lv~~G~sl~~A~~mliPeaw~~~~~m~~~~ra 315 (1479) T 1ea0_A 236 TVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKA 315 (1479) T ss_dssp THHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHH T ss_conf 77668999998887523831002477548747999981488999999999749987999984087554577778878999 Q ss_pred -------HHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCE-EEEEECCHHCCCCCCCEEEE---CCCCEEEEEE Q ss_conf -------998653043999963997999982566541599826956-99986120010478741233---1787079994 Q gi|254780336|r 164 -------SLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGK-PIFCSETCALEITGAKYIRD---VENGETIVCE 232 (488) Q Consensus 164 -------~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~-~v~ASEs~Al~~ig~~~ird---v~PGEiivi~ 232 (488) .|.-|+|.-++++-+++.+.+.-|++|+||+.|..++|. +++|||.-.++. .-+.|.+ +.||+++.++ T Consensus 316 fYeY~s~~mEPWDGPAai~ftDG~~iga~LDRNGLRP~Ry~iT~D~~vilaSE~Gvv~~-~~~~V~~kgRL~PG~mi~vD 394 (1479) T 1ea0_A 316 LIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKI-DETQVIEKGRLGPGEMIAVD 394 (1479) T ss_dssp HHHHHHHHCCCCCSSEEEEECSSSEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCC-CGGGEEEEEECCTTCEEEEE T ss_pred HHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCC-CHHHEEECCCCCCCCEEEEE T ss_conf 99999720567778626666327678995055678750499972883899857984056-71453663665998479998 Q ss_pred ECCCCE Q ss_conf 089847 Q gi|254780336|r 233 LQEDGF 238 (488) Q Consensus 233 ~~~~g~ 238 (488) .....+ T Consensus 395 ~~~G~i 400 (1479) T 1ea0_A 395 LQSGKL 400 (1479) T ss_dssp TTTTEE T ss_pred CCCCCC T ss_conf 368952 No 13 >1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1 Probab=99.40 E-value=2.8e-13 Score=112.95 Aligned_cols=167 Identities=20% Similarity=0.294 Sum_probs=110.7 Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC--------------------------- Q ss_conf 999999999987---48656772012001204779999998199600100117--------------------------- Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN--------------------------- 325 (488) Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn--------------------------- 325 (488) .-|...|++||+ +...+.++|+++|..|++.|...|+++++|+...+++. T Consensus 4 ~dR~~aG~~LA~~l~~~~~~~~vVl~ip~Ggv~~a~~iA~~l~~~~d~~~~~ki~~p~~~e~~~gavs~~~~~~~~~~~~ 83 (208) T 1wd5_A 4 RDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYAL 83 (208) T ss_dssp SSHHHHHHHHHHHHGGGCCCSCEEEECTTHHHHHHHHHHHHHTCEEEECCEEEEEETTEEEEEEEEEETTCCEEECTTHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCEEECCCCEEEECHHH T ss_conf 33999999999999961899879991798764999999998512101466750247887101133075599779710364 Q ss_pred CCCCCEEEECCHHH-----HHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf 65321011064467-----7765320134324553389328974035333338889999985399789999658980588 Q gi|254780336|r 326 HYVGRTFIEPSHHI-----RAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488) Q Consensus 326 ~y~gRtFI~p~~~~-----R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488) ++.++|++++.... +.+.....-+.....++||+|+||||.|-.|.|++..+++||++||++|++.. |+. T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gk~ViLVDD~i~TG~Tm~aa~~~L~~~ga~~v~~a~---pv~-- 158 (208) T 1wd5_A 84 RYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAV---PVA-- 158 (208) T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEE---EEB-- T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE---EEC-- T ss_conf 305815665788889999998764640258974557878999715133589999999999976999899999---856-- Q ss_pred CCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHH Q ss_conf 65650058978885466999889998709977888339899986114666667567320121378766876455674466 Q gi|254780336|r 401 DFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDE 480 (488) Q Consensus 401 c~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~ 480 (488) .. ...++++.. ||-+.+...+++ +..++|--+|| ++.|++....++ T Consensus 159 ---------------~~-~~~~~l~~~--~D~v~~~~p~~f---------------~~v~~~y~~f~-~v~d~ev~~~L~ 204 (208) T 1wd5_A 159 ---------------SP-EAVERLKAR--AEVVALSVPQDF---------------AAVGAYYLDFG-EVTDEDVEAILL 204 (208) T ss_dssp ---------------CH-HHHHHHHTT--SEEEEEECCTTC---------------CCGGGGBSCCC-CCCHHHHHHHHH T ss_pred ---------------CH-HHHHHCCCC--CCEEEECCCCCH---------------HCCCCCCCCCC-CCCHHHHHHHHH T ss_conf ---------------87-788751667--998998578301---------------10240157678-799999999999 Q ss_pred H Q ss_conf 6 Q gi|254780336|r 481 E 481 (488) Q Consensus 481 ~ 481 (488) + T Consensus 205 ~ 205 (208) T 1wd5_A 205 E 205 (208) T ss_dssp T T ss_pred H T ss_conf 8 No 14 >1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1 Probab=99.37 E-value=2.1e-12 Score=106.61 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=96.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHE-ECCCCCCCEEEECCHHHHHHHHHHCC--CCCH Q ss_conf 99999999998748656772012001204779999998199600100-11765321011064467776532013--4324 Q gi|254780336|r 276 VSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGI-IRNHYVGRTFIEPSHHIRAFGVKLKH--SANR 352 (488) Q Consensus 276 ~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~l-vkn~y~gRtFI~p~~~~R~~~v~~K~--~~~~ 352 (488) +..+.+++.||+..+.+.|+|+++|..|++.|...|+++|+||.... .+..+.+++++.+.+..|....+..+ .+.. T Consensus 36 ~l~~~~a~~la~~~~~~~D~vv~i~~~Gi~lA~~lA~~lg~p~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 115 (175) T 1vch_A 36 EFTRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVVARRRRRPYMEDPIIQEVQTLTLGVGEVLWLDRRFA 115 (175) T ss_dssp HHHHHHHHHHGGGSCTTCCEEEEESSTHHHHHHHHHHHHTCCEEEEBSSCCTTCCSCEEEECCC------CEEEECHHHH T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEECCHH T ss_conf 99999999999872899999995384470768999999698959997213677898779767865103542056411000 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 5533893289740353333388899999853997899996 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) ..++||+|+||||.|..|.|++..+++|+++||+.|-+.. T Consensus 116 ~~~~G~rVllVDDvitTG~Tl~a~~~~l~~aGa~vv~v~~ 155 (175) T 1vch_A 116 EKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLA 155 (175) T ss_dssp HHHTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEE T ss_pred HHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 1128988999984416688899999999986997999999 No 15 >1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1 Probab=99.06 E-value=3.5e-10 Score=90.87 Aligned_cols=118 Identities=21% Similarity=0.242 Sum_probs=82.8 Q ss_pred HHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCE Q ss_conf 99998748-65677201200120477999999819960010011765321011064467776532013432455338932 Q gi|254780336|r 282 GKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 (488) Q Consensus 282 G~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~v 360 (488) -++||++- ..+.|+|+||+..|.+.|...|+.++.+-...+...+|.+.+ +.........+....++||+| T Consensus 15 i~~La~~i~~~~~d~IvgI~rgG~~~a~~la~~L~~~~~~~~~~~~y~~~~--------~~~~~~~~~~~~~~~~~gk~V 86 (153) T 1vdm_A 15 IFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGID--------ERGEKPVITIPIHGDLKDKRV 86 (153) T ss_dssp HHHHHHHHHHHCCSEEEEETTTTHHHHHHHHHHTTSCCEEEEEEECCCC----------CCCSSCEEEECCCSCCBTCEE T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCC--------CCCCCEEEECCCCCCCCCCEE T ss_conf 999999987559999999888868999999998689752488653444742--------446740242024323589989 Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC----CCCCCCCCCCCEECC Q ss_conf 897403533333888999998539978999965----898058865650058 Q gi|254780336|r 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA----SPMVLYPDFYGIDIP 408 (488) Q Consensus 361 vlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~----sPpi~~pc~yGid~p 408 (488) +||||.+-.|+|++.+++.|+++||++|++++- +.. .-|+|||.+.. T Consensus 87 LiVDDv~~TG~Tl~~~~~~l~~~ga~~v~~avL~~k~~~~-~~pDy~~~e~~ 137 (153) T 1vdm_A 87 VIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTS-VVPDYYVFRTE 137 (153) T ss_dssp EEEEEEESSCHHHHHHHHHHHTTTBSEEEEEEEEECTTCS-SCCSBBCEECS T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCC-CCCCEEEEECC T ss_conf 9972531568479999999986599789999999988998-65758999868 No 16 >1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A* Probab=98.89 E-value=4.7e-09 Score=82.79 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHH--HHHHHCCCCC Q ss_conf 999999999998748-6567720120012047799999981996001001176532101106446777--6532013432 Q gi|254780336|r 275 YVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRA--FGVKLKHSAN 351 (488) Q Consensus 275 y~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~--~~v~~K~~~~ 351 (488) .++-.++|+.||+.. +.++|.|++++-+|+|.|...|.++|+|+.-.--++++.+.......+..+. ......+..- T Consensus 35 P~~~~~i~~~la~~~~~~~~d~Ivg~~~~GiplA~~lA~~L~~p~v~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (197) T 1y0b_A 35 PLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSG 114 (197) T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHHHHHHHHHHTCCEEEEBSSCCSSCCSSEEEEEEEETTTTEEEEEEEEG T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEH T ss_conf 99999999999998358999899986621099999999986998799985077789884699989840455411465404 Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 45533893289740353333388899999853997899996 Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) ....+|+||++|||-|-.|.|++..+++|+++||+-+.+.+ T Consensus 115 ~~l~~g~rVlIVDDvitTG~T~~~~i~ll~~~Ga~vvgv~v 155 (197) T 1y0b_A 115 THLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGI 155 (197) T ss_dssp GGCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEE T ss_pred HHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 54169979999720213283699999999987998999999 No 17 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=98.79 E-value=1.2e-08 Score=80.02 Aligned_cols=111 Identities=19% Similarity=0.153 Sum_probs=84.8 Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467776532013432455 Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 (488) Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~ 354 (488) ++-.+++..||+.. ..++|.|++++-.|++.|...|..+|+|+...--+.+.-+.+|....+.+......+-+. ...+ T Consensus 36 ~~~~~l~~~la~~~~~~~~d~Vvgie~~Gi~lA~~lA~~Lg~p~v~~rk~~~~~~~~~~~~~~~~~~~~~~iei~-~~~l 114 (186) T 1l1q_A 36 AALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQ-KRQL 114 (186) T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEESGGGHHHHHHHHHHHTCEEEEEEETTSSCSSEEEEEEEETTEEEEEEEEE-GGGC T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEE-CCCC T ss_conf 999999999999706699979998455444778999998199878776137888505999986157766079987-1203 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 338932897403533333888999998539978 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e 387 (488) .+|+||++|||-|..|.|++..+++++++||+- T Consensus 115 ~~G~rVLIVDDvl~TGgT~~a~~~ll~~~Ga~v 147 (186) T 1l1q_A 115 GPHDVVLLHDDVLATGGTLLAAIELCETAGVKP 147 (186) T ss_dssp CTTCCEEEEEEEESSSHHHHHHHHHHHHTTCCG T ss_pred CCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCCE T ss_conf 789989999534331648999999999879947 No 18 >2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} Probab=98.60 E-value=1.9e-07 Score=71.37 Aligned_cols=133 Identities=16% Similarity=0.247 Sum_probs=89.1 Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324 Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488) Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488) +....++..||+ +...+.|.|+|++-.|+|.|...|..+++|+.- +|....+. + ..+.. .- T Consensus 43 ~~~~~l~~~la~~i~~~~~~~d~Ivg~~~gGipla~~va~~l~~p~~~--~RK~~k~~------------g-~~~~~-~g 106 (205) T 2wns_A 43 RLLSQVADILFQTAQNAGISFDTVCGVPYTALPLATVICSTNQIPMLI--RRKETKDY------------G-TKRLV-EG 106 (205) T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEECTTTTHHHHHHHHHHHTCCEEE--ECCTTTTS------------S-SCCSE-ES T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEE--EEECCCCC------------C-CCEEE-CC T ss_conf 999999999999888608888758712022189989888753899346--76203666------------6-31146-68 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488) ...+|++|++|||.|..|.|++..+++|+++|++-+.+.+- +|-.. ...+.+. ..|..- T Consensus 107 ~i~~g~~VlIVDDvitTG~T~~~ai~~l~~~G~~v~~v~vi-----------vdr~~---------~~~~~l~-~~gi~~ 165 (205) T 2wns_A 107 TINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVL-----------LDREQ---------GGKDKLQ-AHGIRL 165 (205) T ss_dssp CCCTTCBEEEEEEEESSSHHHHHHHHHHHHTTCBCCEEEEE-----------EECCS---------SHHHHHH-TTTCEE T ss_pred CCCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECCC---------CHHHHHH-HCCCCE T ss_conf 76666459999610212706798999998689889999999-----------97761---------6599999-779949 Q ss_pred EEEECHHHHHHHH Q ss_conf 8883398999861 Q gi|254780336|r 433 LGFLSVDGLYNAI 445 (488) Q Consensus 433 l~yls~e~l~~ai 445 (488) ..-++++++.+.+ T Consensus 166 ~sL~~l~dl~~~~ 178 (205) T 2wns_A 166 HSVCTLSKMLEIL 178 (205) T ss_dssp EEEEEHHHHHHHH T ss_pred EEECCHHHHHHHH T ss_conf 9975099999999 No 19 >1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A* Probab=98.59 E-value=3.5e-08 Score=76.61 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=88.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH Q ss_conf 99999999999987486567720120012047799999981996001001176532101106446777653201343245 Q gi|254780336|r 274 IYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488) Q Consensus 274 Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488) ++..=++|..++.++. +.|+++|++..|.+.|.-.++.+++|+...+...+|.+.+- ....+ .... T Consensus 12 i~~~~~~La~~i~~~~--~~d~ivgI~rGG~~~a~~L~~~l~~~~~~~~~~~~y~~~~~-------~~~~~-----~~~~ 77 (152) T 1nul_A 12 LQIHARKLASRLMPSE--QWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQ-------RELKV-----LKRA 77 (152) T ss_dssp HHHHHHHHHHHHCSGG--GCSEEEEEETTTHHHHHHHHHHHTCCCEEEEEEEC---------------CEE-----EECC T ss_pred HHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCC-------CCEEE-----EEEC T ss_conf 9999999999998668--99899998886499999999985888279999876165543-------54378-----7410 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCH Q ss_conf 533893289740353333388899999853997899996589805886565005897 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDP 410 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~ 410 (488) .++||+|+||||-+-.|+|++.+++.|+++...-+|.+..+.+ .|.||+.++++. T Consensus 78 ~~~gk~VLiVDDI~DtG~Tl~~i~~~l~~~~~a~l~~K~~~~~--~~d~~~~~~~~d 132 (152) T 1nul_A 78 EGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRP--LVDDYVVDIPQD 132 (152) T ss_dssp SSCCTTEEEEEEEECTTSSHHHHHHHCTTSEEEEEEECGGGGG--GCSEEEEECCTT T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCC--CCCCEEEECCCC T ss_conf 4689726999503154189999998667766999998668985--798188687899 No 20 >2jbh_A HHGP; glycosyltransferase, PRTFDC1, transferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens} Probab=98.56 E-value=3.7e-07 Score=69.30 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=100.7 Q ss_pred EEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC---------CCEEHHEEC- Q ss_conf 0000100247430003728999999999999874865677201200120477999999819---------960010011- Q gi|254780336|r 255 CIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESG---------IPFEQGIIR- 324 (488) Q Consensus 255 C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~g---------ip~~~~lvk- 324 (488) +.++.|.| ....+.+.=.+|+.++.+...-+..++++|...|.+.|--.++++. +|.+-.+++ T Consensus 37 ~~~~~Ili-------~~~~I~~rI~rLA~eI~~~~~~~~~viIgIl~Gg~~fa~dL~~~L~~~~~~~~~~~~~~vdfi~v 109 (225) T 2jbh_A 37 GDLEYVLI-------PHGIIVDRIERLAKDIMKDIGYSDIMVLCVLKGGYKFXADLVEHLKNISRNSDRFVSMKVDFIRL 109 (225) T ss_dssp TSEEEEEE-------CHHHHHHHHHHHHHHHHHHHTTSCEEEEEEETTTHHHHHHHHHHHHHHHHHSSCCCCEEEEEEEE T ss_pred CCCCEEEC-------CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCCEEEEEEEE T ss_conf 54168923-------99999999999999999982999849999837969624899999876403667654247899997 Q ss_pred CCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE-----CCCCC-C Q ss_conf 76532101106446777653201343245533893289740353333388899999853997899996-----58980-5 Q gi|254780336|r 325 NHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV-----ASPMV-L 398 (488) Q Consensus 325 n~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri-----~sPpi-~ 398 (488) ..|.+ +. ....++.-..+....++||+|+||||=+=.|.|++.+++.|.+.||++|.+++ .+-.+ + T Consensus 110 ssY~~-~~-------~~~~~~i~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~L~~~~pksV~~avLl~K~~~r~~~i 181 (225) T 2jbh_A 110 KSYRN-DQ-------SMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGF 181 (225) T ss_dssp C------------------CCEESSSCGGGGTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEECC-CCSCC T ss_pred ECCCC-CC-------CCCCEEEEECCCHHHHHCCCEEEEECEECHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC T ss_conf 13799-76-------34661798058745541050599712112316999999999646999899999998163365898 Q ss_pred CCCCCCEECCCH Q ss_conf 886565005897 Q gi|254780336|r 399 YPDFYGIDIPDP 410 (488) Q Consensus 399 ~pc~yGid~p~~ 410 (488) .|.|+|-++|.. T Consensus 182 ~~Dy~Gfeipd~ 193 (225) T 2jbh_A 182 RPDYAGFEIPNL 193 (225) T ss_dssp CCSEEEEEECSS T ss_pred CCCEEEEECCCC T ss_conf 987899987995 No 21 >2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A* Probab=98.56 E-value=9.6e-09 Score=80.62 Aligned_cols=112 Identities=17% Similarity=0.079 Sum_probs=76.8 Q ss_pred HHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHE----EC-CCCCCCEEEECCHH-----HHHHHHHH Q ss_conf 999999998748-656772012001204779999998199600100----11-76532101106446-----77765320 Q gi|254780336|r 278 RRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGI----IR-NHYVGRTFIEPSHH-----IRAFGVKL 346 (488) Q Consensus 278 R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~l----vk-n~y~gRtFI~p~~~-----~R~~~v~~ 346 (488) -.++.+.||++. ..+.|+|+|||..|.+.|.-.|+.+|+|....+ ++ ..|-+.+- ..... ........ T Consensus 13 i~~~~~~La~~I~~~~pD~IVgI~rGG~i~A~~ls~~L~~~~~~~i~i~~i~~s~y~~~~~-~~~~~~~~~~~~~~~~~~ 91 (213) T 2jky_A 13 VHQLCQVSAERIKNFKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIILSLYEDLNS-VGSEVEEVGVKVSRTQWI 91 (213) T ss_dssp HHHHHHTTHHHHHHHCCSEEEECSGGGHHHHHHHHHHHCCTTSCCCEEEECCCCSEECSSC-CCCCC---SCCEECCTTS T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCC-CCCCCCCHHHHCCCCCCC T ss_conf 9999999999975889999999898889999999998523136765554578898840256-676101111001323111 Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 13432455338932897403533333888999998539978999 Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488) Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488) +..+....++||+|+||||-+-.|.|++.+++.|+++||++|.. T Consensus 92 ~~~~~~~~l~gk~VLIVDDi~dTG~Tl~~~~~~L~~~g~~~v~~ 135 (213) T 2jky_A 92 DYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAKA 135 (213) T ss_dssp CCCCCCCCCTTCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHEEE T ss_conf 24676546689879999542030289999999998539454154 No 22 >2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A* Probab=98.51 E-value=5.5e-07 Score=68.07 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=101.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHC Q ss_conf 03728999999999999874865677201200120477999999819960010011-76532101106446777653201 Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLK 347 (488) Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K 347 (488) ++-..+...=++|+.++.+...-+..+++||..-|.+.|--.++.+..|++..+++ ..|.+.+ .++ ..+... T Consensus 14 ls~~~I~~~i~rLA~~I~~~~~~~~~viigIl~Gg~~fa~~L~~~L~~~~~~~~i~~s~y~~~~--~~~-----~~~~~~ 86 (181) T 2ywu_A 14 ISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAF--KSS-----GEVELL 86 (181) T ss_dssp BCHHHHHHHHHHHHHHHHHHTTTCCCEEEEEETTTHHHHHHHHTTCCSCCEEEEEEEC-------------------CEE T ss_pred ECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CCC-----CCEEEC T ss_conf 5699999999999999999828998479999577428899998752777555522788607874--678-----836661 Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHHH Q ss_conf 3432455338932897403533333888999998539978999965-------8980588656500589788854 Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALLA 415 (488) Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLia 415 (488) .++...++||+|+||||=+=.|.|++.+++.|++.||++|.+++- ..| ..|.|+|.++|. ++|. T Consensus 87 -~~~~~~~~gk~VliVDDVlDTG~TL~~~~~~l~~~~p~~i~~avL~dK~~~r~~~-i~~Dy~G~eipd--~~vv 157 (181) T 2ywu_A 87 -KDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVE-VPIHYLGFEIED--AYVY 157 (181) T ss_dssp -ECCCSCCTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSC-CCCSEEEEECCS--CCEE T ss_pred -CCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCC-CCCCEEEEECCC--CEEE T ss_conf -5798687898079998887275529999999983699889999999737315489-898789998699--4399 No 23 >1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A* Probab=98.50 E-value=4.3e-07 Score=68.88 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=83.3 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEE-EE Q ss_conf 100247430003728999999999999874---86567720120012047799999981996001001176532101-10 Q gi|254780336|r 259 YVYFARPDSIISGRSIYVSRRNMGKNLAKE---SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTF-IE 334 (488) Q Consensus 259 yIYFarpdS~~~g~~Vy~~R~~lG~~La~~---~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtF-I~ 334 (488) .++|--.-+.+.+ -+.++.+++.|++. ...+.|+|+|++-.|++.|...|.++|+|+...=-+.+--|.+. +. T Consensus 38 ~~~F~Di~~ll~~---P~~~~~i~~~l~~~~k~~~~~~D~Ivgie~~Gi~~A~~lA~~Lg~p~v~vRK~~K~~g~~~~~e 114 (236) T 1qb7_A 38 VPRFADVSSITES---PETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSE 114 (236) T ss_dssp SSSEECTHHHHTC---HHHHHHHHHHHHHHHHHCSSCCSEEEEETTGGGGTHHHHHHHHTCCEEEEBCGGGCCSSEEECC T ss_pred CCEEEECCHHHCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEE T ss_conf 9889849047549---9999999999999998548999899966446589899999986347688653156788750468 Q ss_pred CCH----HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 644----677765320134324553389328974035333338889999985399789999 Q gi|254780336|r 335 PSH----HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 335 p~~----~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) ... +.+.....+.. ....+|+||++|||=|-.|.|++..+++++++||+-+.+. T Consensus 115 ~~~~e~g~~~~~~l~~~~---~~i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~~ 172 (236) T 1qb7_A 115 PYEKEYKEAAPEVMTIRY---GSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMV 172 (236) T ss_dssp CCCCCTTSCCCCCCEEET---TSSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEE T ss_pred EEEEEEECCCCCCCCCCC---CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 899887136542222237---8535696799996016356699999999998799899999 No 24 >2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix} Probab=98.48 E-value=8e-07 Score=66.93 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=90.6 Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324 Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488) Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488) +.+..+++.+++ +...+.|+|+|++-.|+|.|...|+.+++|+. +++.+..+. . ...-+. T Consensus 39 ~~~~~~~~~~~e~~~~~~~~~d~Vvg~~~gGip~a~~~A~~l~~p~~--~iRk~~k~~-----g----------~~~~~~ 101 (178) T 2yzk_A 39 SSYSVALDLLLEVGGQDLARSSAVIGVATGGLPWAAMLALRLSKPLG--YVRPERKGH-----G----------TLSQVE 101 (178) T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEEETTTTHHHHHHHHHHHTCCEE--EECCCCTTS-----C----------CCCCCB T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCEE--EEEEECCCC-----C----------CCCEEE T ss_conf 99999999999998754465898998737741566777886458720--223103566-----5----------441488 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488) ..++|++|++|||.+-.|.|++..+++|+++|++-+.+.+- +|-. ....|..+..|..- T Consensus 102 g~~~g~~VlIVDDvitTG~S~~~~i~~l~~~G~~v~~v~vl-----------vdr~----------~~~~e~~~~~gi~~ 160 (178) T 2yzk_A 102 GDPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVL-----------VDRG----------EGAGELLARMGVRL 160 (178) T ss_dssp TCCCSSEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------EECC----------SSHHHHHHTTTCEE T ss_pred EECCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECC----------CCHHHHHHHCCCCE T ss_conf 52489579999744735746899999999889979999999-----------9787----------67689999769989 Q ss_pred EEEECHHHHHHHHC Q ss_conf 88833989998611 Q gi|254780336|r 433 LGFLSVDGLYNAIC 446 (488) Q Consensus 433 l~yls~e~l~~ai~ 446 (488) ..-++++++.+.++ T Consensus 161 ~Sl~~~~~l~~~l~ 174 (178) T 2yzk_A 161 VSVATLKTILEKLG 174 (178) T ss_dssp EEEEEHHHHHHHTT T ss_pred EEEEEHHHHHHHHH T ss_conf 99738999999998 No 25 >1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A* Probab=98.46 E-value=9.7e-07 Score=66.33 Aligned_cols=135 Identities=15% Similarity=0.277 Sum_probs=98.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHCC Q ss_conf 3728999999999999874865677201200120477999999819960010011-765321011064467776532013 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLKH 348 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K~ 348 (488) .-..+...=.+|..++.+...-+..+++||...|.+.|--.+++++.|....++. ..|.+ .......+... T Consensus 38 s~~~I~~~I~rLA~qI~~~~~~~~~vlvgIl~GG~~fa~~L~~~L~~~~~i~~i~~~~y~~-------~~~~~g~~~~~- 109 (205) T 1yfz_A 38 TEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGS-------STKSSGIVKII- 109 (205) T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCEEEEEETTTHHHHHHHHHHTCCSCCEEEEEEEEECSH-------HHHHHCCEEEE- T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEECC-------CCCCCCCEEEE- T ss_conf 9999999999999999997499964999992595207876654132343453699985068-------75568855781- Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHHH Q ss_conf 432455338932897403533333888999998539978999965-------8980588656500589788854 Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALLA 415 (488) Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLia 415 (488) .+....++||+|+||||=+=.|.|++.+++.|++.||++|.+++- ..||. |.|+|.++|+ ++|. T Consensus 110 ~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~l~~~~p~~i~~avL~dK~~~~~~~i~-~Dy~Gfei~d--~fvv 180 (205) T 1yfz_A 110 KDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVK-VDYCGFKIPD--KFVV 180 (205) T ss_dssp ECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCCSCCC-CSEEEEECCS--SCCB T ss_pred CCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC-CCEEEEEECC--CCEE T ss_conf 576647789979999332235699999999998639980779999980666758999-8889999199--3779 No 26 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Probab=98.42 E-value=5.8e-07 Score=67.91 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=79.8 Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCH-HHHHHHHHHCCCCCH Q ss_conf 999999999998748-656772012001204779999998199600100117653210110644-677765320134324 Q gi|254780336|r 275 YVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSH-HIRAFGVKLKHSANR 352 (488) Q Consensus 275 y~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~-~~R~~~v~~K~~~~~ 352 (488) ..+-..|+..|++.. +.+.|.|+++.-.|++.|...|.++|+|+...= |..+........+. ..+. .-.+.. .-. T Consensus 41 ~~i~~~la~~l~e~~~~~~~D~Vvg~e~~Gi~la~~lA~~L~~p~v~~R-K~~kl~~~~~~~~~~~~~~-~~~l~~-~~~ 117 (187) T 1g2q_A 41 QKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFVPVR-KAGKLPGECFKATYEKEYG-SDLFEI-QKN 117 (187) T ss_dssp HHHHHHHHHHHHHHCTTSCCCEEEEETTTHHHHHHHHHHHHTCEEEEEE-ETTCSCSSEEEEEEECSSC-EEEEEE-ETT T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE-ECCCCCCCCEEEEEEECCC-CEEEEE-EEC T ss_conf 9999999999998617679879998345753558999998699848997-3687886404798751565-417888-614 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 55338932897403533333888999998539978999965 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) ...+|+||++|||=|-.|.|++..+++++++||+-+.+.+- T Consensus 118 ~i~~G~rVlIVDDvi~TGgT~~a~~~ll~~~Ga~Vv~~~vl 158 (187) T 1g2q_A 118 AIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFV 158 (187) T ss_dssp SSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEE T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 44678679998300403769999999999879989999999 No 27 >3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine phosphoribosyltransferase, 2-(N- morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A* Probab=98.40 E-value=9.8e-07 Score=66.31 Aligned_cols=139 Identities=17% Similarity=0.274 Sum_probs=101.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCC Q ss_conf 03728999999999999874865677201200120477999999819960010011765321011064467776532013 Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKH 348 (488) Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~ 348 (488) +.-..+...=.+|+.++.+...-+..++++|-..|.+.|--..+++..|....++.-......+ .....++.. T Consensus 35 is~e~I~~~I~rLA~qI~e~~~~~~~viI~Il~Gg~~fa~~L~~~l~~~~~~~~~~~s~y~~~~------~s~~~v~~~- 107 (204) T 3hvu_A 35 ISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHST------VSTGEVKIL- 107 (204) T ss_dssp ECHHHHHHHHHHHHHHHHHHTSSSCCEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEEECSGGG------TTSCCEEEE- T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCC------CCCCCEEEE- T ss_conf 4899999999999999999749997199999157589999999731887567548999966987------626846881- Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHH-HCC Q ss_conf 432455338932897403533333888999998539978999965-------898058865650058978885-466 Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALL-ANK 417 (488) Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLi-a~~ 417 (488) ..+...++||+|+||||=+=.|.|++.+++.|.+.||++|.++.- ..|+. |.|+|.++|. +.| .+. T Consensus 108 ~~~~~~i~gk~VLlVDDIlDTG~Tl~~~~~~l~~~~p~sv~~avLl~K~~~r~~pi~-pDy~G~ei~d--~~vVGyG 181 (204) T 3hvu_A 108 KDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLK-ADYVGFTVPH--EFVVGYG 181 (204) T ss_dssp ECCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECGGGCSSCCC-CSEEEEECCS--CCEEBTT T ss_pred CCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC-CCEEEEECCC--CEEEECC T ss_conf 478857699989997024307499999999999649981689999995854648989-9889999299--3699888 No 28 >3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A Probab=98.39 E-value=1.6e-06 Score=64.80 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=97.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHC Q ss_conf 037289999999999998748-6567720120012047799999981996001001176532101106446777653201 Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLK 347 (488) Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K 347 (488) ++-..+...=.+|..++.+.. ..+..+++||...|.+.|.-.++++++|+.-.+++-.+. ... ......+... T Consensus 9 is~~~I~~~i~rLA~qI~e~~~~~~~~vlvgI~~GG~~~a~~L~~~l~~~~~i~~~~~~~y---~~~---~~~~~~~~~~ 82 (177) T 3ohp_A 9 ISEQEVAQRIRELGQQITEHYQGSSDLVLVGLLRGSFVFMADLARQIHLTHQVDFMTASSY---GNS---MQSSRDVRIL 82 (177) T ss_dssp ECHHHHHHHHHHHHHHHHHHTTTCSCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEECC--------------CCCCEE T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEEE---CCC---CCCCCCCEEE T ss_conf 2899999999999999999738999779999816836899999985189702554898885---133---4678861584 Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-----CC-CCCCCCCEECCCH Q ss_conf 343245533893289740353333388899999853997899996589-----80-5886565005897 Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP-----MV-LYPDFYGIDIPDP 410 (488) Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP-----pi-~~pc~yGid~p~~ 410 (488) . .....++||+|+||||=+=.|.|++.+++.|++.||++|.+++--= ++ ..|.|+|.++|+. T Consensus 83 ~-~~~~~~~gk~VLiVDDI~dTG~Tl~~~~~~l~~~~p~~v~~avL~dK~~~~~~~i~pDy~G~ei~d~ 150 (177) T 3ohp_A 83 K-DLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICTLLDKPTRREVDVEVNWVGFEIPDE 150 (177) T ss_dssp E-CCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSCCCCSEEEEECCSC T ss_pred C-CCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCC T ss_conf 4-8875668997999940774579999999999858998899999998275563899998899988996 No 29 >3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} Probab=98.35 E-value=1.2e-06 Score=65.58 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=100.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC-CCCCCEEEECCHHHHHHHHHHCC Q ss_conf 37289999999999998748656772012001204779999998199600100117-65321011064467776532013 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN-HYVGRTFIEPSHHIRAFGVKLKH 348 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn-~y~gRtFI~p~~~~R~~~v~~K~ 348 (488) ....+.+.=.+|+.++.+...-+..+++||-..|.+.|--.++.++.|....++.- .|.+-+ . .+ ..+... T Consensus 14 s~e~I~~~i~~lA~~I~~~~~~~~~viIgIl~GG~~fa~~L~~~L~~~~~~~~~~~s~y~~~~--~----~~-~~~~~~- 85 (186) T 3o7m_A 14 SEEQLQEKVKELALQIERDFEGEEIVVIAVLKGSFVFAADLIRHIKNDVTIDFISASSYGNQT--E----TT-GKVKLL- 85 (186) T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCEEEEEETTTTHHHHHHHHTTCCSCEEEEEEEEEECC--------------CEEEE- T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCC--E----EC-CCEEEC- T ss_conf 899999999999999998759997699999679789999998723788305789999738985--7----75-823162- Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHHH-CCC Q ss_conf 432455338932897403533333888999998539978999965-------8980588656500589788854-669 Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALLA-NKC 418 (488) Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLia-~~~ 418 (488) .++...++||+|+||||=+=.|.|++.+++.|++.||++|.++.- ..| ..|.|+|.++|. +.+. +.+ T Consensus 86 ~~~~~~i~gk~VLlVDDVlDTG~TL~~~~~~l~~~~~~~v~~avL~~k~~~r~~~-i~~Dy~G~ei~d--~~vvGyGl 160 (186) T 3o7m_A 86 KDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDKPERRKVD-LTAEYVGFQIPD--EFIVGYGI 160 (186) T ss_dssp ECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSC-CCCSEEEEECCC--SSEEBTTB T ss_pred CCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCC-CCCCEEEEECCC--CEEEECCC T ss_conf 5887575898899994255114789999999874499918999999946557589-999989998599--22898987 No 30 >2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12} Probab=98.32 E-value=1.2e-06 Score=65.73 Aligned_cols=116 Identities=18% Similarity=0.088 Sum_probs=82.3 Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467776532013432455 Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 (488) Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~ 354 (488) +....+++.||+.. +.+.|.|++++-+|++-|...|.++|+|+.-.--+.+..++.+...... ....-++.+ ..... T Consensus 46 ~~~~~v~~~la~~~~~~~~D~Iv~~e~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~~~~-~~~~~~~~i-~~~~l 123 (190) T 2dy0_A 46 KAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL-EYGTDQLEI-HVDAI 123 (190) T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEETTHHHHHHHHHHHHHTCEEEEEBSTTCCCSCEEEEEEEE-TTEEEEEEE-EGGGC T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEE-ECCEEEEEE-ECCCC T ss_conf 9999999999998406899999973534312068999975998698755798888606899988-603788898-63667 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 338932897403533333888999998539978999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) -+|+||++|||=|-.|.|+...+++|+++||+=+.+.+- T Consensus 124 ~~G~rVlIVDDvlaTGgT~~a~~~ll~~~Ga~Vvg~~vi 162 (190) T 2dy0_A 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFI 162 (190) T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEE T ss_pred CCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 899879998244131748999999999869989999999 No 31 >1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1 Probab=98.31 E-value=8.8e-07 Score=66.61 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=98.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCC Q ss_conf 37289999999999998748656772012001204779999998199600100117653210110644677765320134 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHS 349 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~ 349 (488) +-..+...=.+|+.++.+...-+..+++||..-|.+.|--.++.++.|....++.-.+.+.+. ....++.. . T Consensus 16 s~~~I~~~i~~LA~~I~e~~~~~~~vligIl~Gg~~fa~~L~~~L~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~ 87 (183) T 1hgx_A 16 NQDDIQKRIRELAAELTEFYEDKNPVMICVLTGAVFFYTDLLKHLDFQLEPDYIICSSYSGTK-------STGNLTIS-K 87 (183) T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTTTHHHHHHHHTTCCSCCEEEEEEEEC----------------CEEE-E T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCC-------CCCCCEEE-C T ss_conf 999999999999999999738998389996477099999998626887422567877558854-------38851031-2 Q ss_pred CCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--------CCCCCCCCCCEECCCHHHHH Q ss_conf 324553389328974035333338889999985399789999658--------98058865650058978885 Q gi|254780336|r 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--------PMVLYPDFYGIDIPDPTALL 414 (488) Q Consensus 350 ~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--------Ppi~~pc~yGid~p~~~eLi 414 (488) .....++||+|+||||=+=.|+|++.++..|++.||++|.+++-- .| +.|.|.|.++|. +.+ T Consensus 88 ~~~~~~~gk~VLlVDDI~dtG~Tl~~~~~~l~~~~p~si~~avL~dK~~~rr~~~-i~~Dy~Gf~i~d--~~v 157 (183) T 1hgx_A 88 DLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCTLCDKDIGKKAYD-VPIDYCGFVVEN--RYI 157 (183) T ss_dssp CCSSCCTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEECCSSCSSC-CCCSEEEEEECS--SCE T ss_pred CCCCHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC-CCCCEEEEEECC--EEE T ss_conf 6640003533213542365655699999999738997899999997075554689-998479998199--059 No 32 >2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis} Probab=98.29 E-value=4e-06 Score=61.92 Aligned_cols=135 Identities=15% Similarity=0.240 Sum_probs=98.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCC Q ss_conf 37289999999999998748656772012001204779999998199600100117653210110644677765320134 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHS 349 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~ 349 (488) +-..+...=.+|..++.+...-+..+++||-.-|.+.|--.++.++.|....+++-. +-. ....+...+. ... T Consensus 18 s~~~I~~~i~rLA~~I~~~~~~~~~viigil~GG~~fa~~L~~~l~~~~~i~~~~~~-----~y~-~~~~~~~~~~-~~~ 90 (185) T 2geb_A 18 TEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVS-----SYG-SSTKSSGIVK-IIK 90 (185) T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEE-----ECS-TTHHHHCCEE-EEE T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHEEEEEEEEEEEEE-----EEC-CCCCCCCCEE-EEC T ss_conf 999999999999999999749997399999578547999986432331356788764-----206-8704678558-815 Q ss_pred CCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHH Q ss_conf 32455338932897403533333888999998539978999965-------898058865650058978885 Q gi|254780336|r 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALL 414 (488) Q Consensus 350 ~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLi 414 (488) +....++||+|+||||=+=.|.|++.+++.|.+.||++|.++.- ..|+ .|.|+|.++|+ +++ T Consensus 91 ~~~~~i~gk~VLlVDDVldTG~TL~~~~~~l~~~~~~si~~~vL~~k~~~r~~~i-~~Dy~G~~v~d--~~v 159 (185) T 2geb_A 91 DHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADV-KVDYCGFKIPD--KFV 159 (185) T ss_dssp CCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCCSCC-CCSEEEEECCS--CCE T ss_pred CCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC-CCCEEEEEECC--CCE T ss_conf 6752789998999950544379999999999863998589978998045564899-98889999099--258 No 33 >1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1 Probab=98.25 E-value=4.9e-06 Score=61.31 Aligned_cols=140 Identities=13% Similarity=0.180 Sum_probs=96.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHHHHHC---CCCEEHHEEC-CCCCCCEEEECCH Q ss_conf 00372899999999999987486------567720120012047799999981---9960010011-7653210110644 Q gi|254780336|r 268 IISGRSIYVSRRNMGKNLAKESP------VIADIVVPIPDGGVPAAIGYAKES---GIPFEQGIIR-NHYVGRTFIEPSH 337 (488) Q Consensus 268 ~~~g~~Vy~~R~~lG~~La~~~~------~~~DiV~~VPdsg~~aA~gya~~~---gip~~~~lvk-n~y~gRtFI~p~~ 337 (488) .+.-..+...=.+|+.++.++.. -+.-++++|...|.+.|--.++++ ..|....+++ .+|-+.+- T Consensus 27 L~t~e~I~~~i~~lA~qI~~~y~d~~~~~~~plvlV~Vl~Gg~~Fa~dL~r~L~~~~~~~~i~~i~~~sy~~~~~----- 101 (211) T 1pzm_A 27 LVTQEQVWAATAKCAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGSGVE----- 101 (211) T ss_dssp EECHHHHHHHHHHHHHHHHHHHGGGTCBTTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEEEBCC------------ T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC----- T ss_conf 737999999999999999998754113689977999982675999999999850467763677888753125765----- Q ss_pred HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------CCCCCCCCCCEECCCH Q ss_conf 677765320134324553389328974035333338889999985399789999658-------9805886565005897 Q gi|254780336|r 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS-------PMVLYPDFYGIDIPDP 410 (488) Q Consensus 338 ~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s-------Ppi~~pc~yGid~p~~ 410 (488) ....+. ........++||+|+||||=+=.|.|++.+++.|++.||++|.++.-- .| ..|.|.|.++|.+ T Consensus 102 --~~~~~~-~~~~~~~~l~gk~VlIVDDIlDTG~TL~~~~~~l~~~g~~sv~~avLl~K~~~r~~~-i~~DyvGf~ipd~ 177 (211) T 1pzm_A 102 --TSGQVR-MLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVD-VLVDYPVITIPRA 177 (211) T ss_dssp ---------CCBCCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSC-CCCSEEEEECCSC T ss_pred --CCCEEE-ECCCCCHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCC-CCCCEEEEECCCC T ss_conf --587157-615760333202158973113366169999999983699979999999857436489-8988899982994 Q ss_pred HHHHHCC Q ss_conf 8885466 Q gi|254780336|r 411 TALLANK 417 (488) Q Consensus 411 ~eLia~~ 417 (488) =++.+. T Consensus 178 -fvvGYG 183 (211) T 1pzm_A 178 -FVIGYG 183 (211) T ss_dssp -CEEBTT T ss_pred -EEEECC T ss_conf -499898 No 34 >1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A* Probab=98.21 E-value=7e-06 Score=60.22 Aligned_cols=139 Identities=22% Similarity=0.325 Sum_probs=97.8 Q ss_pred EEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC---------CCCEEHHEECC-C Q ss_conf 0010024743000372899999999999987486567720120012047799999981---------99600100117-6 Q gi|254780336|r 257 FEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKES---------GIPFEQGIIRN-H 326 (488) Q Consensus 257 FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~---------gip~~~~lvkn-~ 326 (488) +|-|+|+ ...+.+.=.+|++++.+...-+.-+++||-+-|.+.|--..+.+ ++|++..+++- . T Consensus 31 ~~~Ilis-------~~~I~~~I~~lA~eI~~~y~~k~~vlVgIL~Gg~~Fa~dL~~~L~~~~~~~~~~~~~~~df~~~ss 103 (217) T 1z7g_A 31 LERVFIP-------HGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKS 103 (217) T ss_dssp EEEEEEC-------HHHHHHHHHHHHHHHHHHHTTSCEEEEEECSSCCHHHHHHHHHHHHHHTTCSSCCCEEEEEECBC- T ss_pred HCEEECC-------HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC T ss_conf 0589328-------999999999999999998299975999992785999999999998751577654244888999633 Q ss_pred CCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-----CC-CCCCC Q ss_conf 5321011064467776532013432455338932897403533333888999998539978999965-----89-80588 Q gi|254780336|r 327 YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-----SP-MVLYP 400 (488) Q Consensus 327 y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-----sP-pi~~p 400 (488) |.|.+-. ..+......+...++||.|+||||=+=.|.|++.++..|.+.||++|-++.- .- .-+.| T Consensus 104 y~~~~~~--------~~~~~~~~~~~~~l~gk~VLiVDDIlDTG~TL~~~~~~l~~~~p~sv~~~~Ll~K~~~r~~~i~~ 175 (217) T 1z7g_A 104 YCNDQST--------GDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKP 175 (217) T ss_dssp -----------------CCBCCSSCGGGGTTSEEEEEEEECCCHHHHHHHHHHHHTTCCSEEEEEEEEEECC-----CCC T ss_pred CCCCCCC--------CCEEEECCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCC T ss_conf 6886444--------63034325870416536689960420062899999999847698969999999846204589998 Q ss_pred CCCCEECCCH Q ss_conf 6565005897 Q gi|254780336|r 401 DFYGIDIPDP 410 (488) Q Consensus 401 c~yGid~p~~ 410 (488) .|+|-++|.+ T Consensus 176 DyvGfei~d~ 185 (217) T 1z7g_A 176 DFVGFEIPDK 185 (217) T ss_dssp SEEEEEECSC T ss_pred CEEEEECCCC T ss_conf 6899982992 No 35 >1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A* Probab=98.21 E-value=3.5e-06 Score=62.40 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=76.6 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCC Q ss_conf 99999987486567720120012047799999981996001001176532101106446777653201343245533893 Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 (488) Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~ 359 (488) .+-..+.+....++|.|+++.-+|++.|...|.++|+|+.-.=-+++.-+.++-....... ..-.+. ......-+|+| T Consensus 45 ~l~~~~~~~~~~~~D~Ivgie~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~~~~~~-~~~~~~-~~~~~i~~g~r 122 (180) T 1zn8_A 45 LLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEY-GKAELE-IQKDALEPGQR 122 (180) T ss_dssp HHHHHHHHHHTTCCCEEEEETTTHHHHHHHHHHHHTCEEEEEEETTCCCSSEEEEEEEETT-EEEEEE-EETTSSCTTCE T ss_pred HHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEE-CCCCEE-EECCCCCCCCE T ss_conf 9999998745678889998256643601688997299828999668788861799998664-564068-85055458988 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 289740353333388899999853997899996 Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) |++|||=|-.|.|+...+++++++||+=+.+.+ T Consensus 123 VlIVDDvlaTGgT~~a~~~ll~~~Ga~vvg~~~ 155 (180) T 1zn8_A 123 VVVVDDLLATGGTMNAACELLGRLQAEVLECVS 155 (180) T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEE T ss_pred EEEEEHHHHHCCHHHHHHHHHHHCCCEEEEEEE T ss_conf 999954634081899999999987998999999 No 36 >2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129} Probab=98.15 E-value=9.6e-06 Score=59.25 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=76.1 Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467776532013432455 Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 (488) Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~ 354 (488) +....+++.+++.. ..+.|.|+|++-.|.+.|.+++.+++.++...+++....+.. .. +. ..... T Consensus 46 ~~~~~l~~~l~~~~~~~~~~~i~gi~~~g~~~a~~~~~a~~~~l~~~~~rke~k~~g--------~~-----~~-~~g~~ 111 (180) T 2p1z_A 46 RASRLIGELLRELTADWDYVAVGGLTLGADPVATSVMHADGREIHAFVVRKEAKKHG--------MQ-----RR-IEGPD 111 (180) T ss_dssp HHHHHHHHHHHHTTTTSCCSEEEEETTTHHHHHHHHHHSSSSCCEEEEECSCCC-CC---------C-----CS-EESSC T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCC--------CC-----EE-EEEEE T ss_conf 999999999998763468628974131126888899998477786279987515676--------30-----35-77540 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 33893289740353333388899999853997899996 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) .+|+||++|||-|-.|.|+...+++|+++||+-+.+.+ T Consensus 112 ~~g~rVlIVDDviTTG~S~~~~i~~l~~~G~~V~~v~v 149 (180) T 2p1z_A 112 VVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVAT 149 (180) T ss_dssp CTTCEEEEEEEECSSSHHHHHHHHHHHHHTCEEEEEEE T ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 58976899975230375199999999988997999999 No 37 >1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A* Probab=98.12 E-value=1.5e-05 Score=57.93 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=93.1 Q ss_pred CCHHHHHHHHHHHHHHHHHC----C---CCCCCCCCCCCCHHHHHHHHHHHC---CCCEEHHEECCCCCCCEEEECCHHH Q ss_conf 37289999999999998748----6---567720120012047799999981---9960010011765321011064467 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKES----P---VIADIVVPIPDGGVPAAIGYAKES---GIPFEQGIIRNHYVGRTFIEPSHHI 339 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~----~---~~~DiV~~VPdsg~~aA~gya~~~---gip~~~~lvkn~y~gRtFI~p~~~~ 339 (488) .-..+...=.+|+.++.+.. + .+..+++||..-|.+.|--.++.+ ..|....++.-. +..-. + . T Consensus 13 s~~eI~~~I~~LA~eI~e~y~~~~~~~~~~~lvlVgIl~Gg~~fa~~L~r~L~~~~~~~~i~~~~~s---~y~~~-~--~ 86 (220) T 1tc1_A 13 TEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVS---SYGEG-L--T 86 (220) T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCBTTTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEEEEEE---CC-------- T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEE---CCCCC-C--C T ss_conf 9999999999999999998347755567788799998777599999999974312788146678763---02321-2--4 Q ss_pred HHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--C---CC-CCCCCCCEECCCHHHH Q ss_conf 7765320134324553389328974035333338889999985399789999658--9---80-5886565005897888 Q gi|254780336|r 340 RAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--P---MV-LYPDFYGIDIPDPTAL 413 (488) Q Consensus 340 R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--P---pi-~~pc~yGid~p~~~eL 413 (488) ....+. ....+...++||+|+||||=+=.|.|++.+++.|++.||++|.++.-- | .+ ..|.|+|.++|.+ =+ T Consensus 87 ~~~~v~-~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLl~K~~~r~~pi~~Dy~Gf~ipd~-fv 164 (220) T 1tc1_A 87 SSGQVR-MLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNA-FV 164 (220) T ss_dssp ----CE-EEECCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECTTCCSSCCCCSEEEEECCSC-EE T ss_pred CCCCEE-ECCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCE-EE T ss_conf 676234-5046873425876799830420749999999999830999689999997276575898988899984990-79 Q ss_pred HHCC Q ss_conf 5466 Q gi|254780336|r 414 LANK 417 (488) Q Consensus 414 ia~~ 417 (488) +.+. T Consensus 165 VGyG 168 (220) T 1tc1_A 165 IGYG 168 (220) T ss_dssp EBTT T ss_pred EECC T ss_conf 9877 No 38 >1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1 Probab=98.11 E-value=2.5e-05 Score=56.23 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=94.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHHHHHC----CCCEEHHEECCCCCCCEEEECCH Q ss_conf 3728999999999999874865--------67720120012047799999981----99600100117653210110644 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPV--------IADIVVPIPDGGVPAAIGYAKES----GIPFEQGIIRNHYVGRTFIEPSH 337 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~--------~~DiV~~VPdsg~~aA~gya~~~----gip~~~~lvkn~y~gRtFI~p~~ 337 (488) +...+...=.+|+.+..|.... +.-+++||...|.+.|.-.++.+ ++|...+.+.-......+ T Consensus 18 s~~dI~~~I~rlA~qI~E~~~~~~~~~~~~~~lvlVGIl~GG~~fa~~L~~~L~~~~~~~v~~~~i~~~~y~~~~----- 92 (201) T 1w30_A 18 SAANVGRTISRIAHQIIEKTALDDPVGPDAPRVVLLGIPTRGVTLANRLAGNITEYSGIHVGHGALDITLYRDDL----- 92 (201) T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTSCCBTTBCCEEEEECTTHHHHHHHHHHHHHHHHHSCCCEEEECCCGGGCC------- T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCC----- T ss_conf 999999999999999987435544333688877999977671999999999998741753157888778860564----- Q ss_pred HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHH-HHHCCCCEEEEEEC------CCCCCCCCCCCEECCCH Q ss_conf 677765320134324553389328974035333338889999-98539978999965------89805886565005897 Q gi|254780336|r 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQM-IRSAGASEVHLRVA------SPMVLYPDFYGIDIPDP 410 (488) Q Consensus 338 ~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~-lr~aGa~evh~ri~------sPpi~~pc~yGid~p~~ 410 (488) .........+.......++||.|+||||=+=.|.|++.+++. |...+|+.|.+++= --| +.|.|.|.++||. T Consensus 93 ~~~~~~~~~~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~ll~~~~p~~V~~avLvdr~~r~~p-I~~DyvG~~ipt~ 171 (201) T 1w30_A 93 MIKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAVLVDRGHRELP-LRADYVGKNVPTS 171 (201) T ss_dssp ------CCCCCBCCTTCSTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECCCCSSS-BCCSEEEEECCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC-CCCCEEEEECCCC T ss_conf 446655543345567465797899994022567689999999985289868999999927987489-7898798981599 Q ss_pred H-HHHHCC Q ss_conf 8-885466 Q gi|254780336|r 411 T-ALLANK 417 (488) Q Consensus 411 ~-eLia~~ 417 (488) . |-|.-. T Consensus 172 ~~e~v~v~ 179 (201) T 1w30_A 172 RSESVHVR 179 (201) T ss_dssp TTCEEEEE T ss_pred CCCEEEEE T ss_conf 99869999 No 39 >1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A Probab=98.11 E-value=7.8e-06 Score=59.87 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=90.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC------------CEEHHEECCCCCCCEEEECCHHHH Q ss_conf 89999999999998748656772012001204779999998199------------600100117653210110644677 Q gi|254780336|r 273 SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGI------------PFEQGIIRNHYVGRTFIEPSHHIR 340 (488) Q Consensus 273 ~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gi------------p~~~~lvkn~y~gRtFI~p~~~~R 340 (488) .+.+.=.+|+.++.+...-+.-++++|...|.+.|.-.++.+.. |....+++-.+.+.+ + T Consensus 54 ~I~~rI~rLA~eI~e~y~~~~lvlIgIl~Gg~~Fa~~L~r~L~~~~~~~~~~~~i~~~~~~~~~~s~~~~~--------~ 125 (233) T 1fsg_A 54 LVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVRLKSYQND--------N 125 (233) T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEEETTTHHHHHHHHHHHHHHHHHCSSCCSSCSCEEEEEEEEEEETT--------E T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCC--------C T ss_conf 99999999999999983999719999927879999999999987632355444678368999985026886--------6 Q ss_pred HHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHH Q ss_conf 76532013432455338932897403533333888999998539978999965-------89805886565005897888 Q gi|254780336|r 341 AFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTAL 413 (488) Q Consensus 341 ~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eL 413 (488) ..............++||.|+||||=+=.|.|++.+++.|.+.||++|.+++- .-|+ .|.|+|.++| +++ T Consensus 126 ~~~~~~~~~~~~~~i~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLldK~~~r~~pi-~~Dy~Gfeip--d~f 202 (233) T 1fsg_A 126 STGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSL-KGDFVGFSIE--DVW 202 (233) T ss_dssp EEEEEEEECSCGGGGTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEECCTTCCSC-BCSEEEEEEC--SCC T ss_pred CCCCEEECCCCHHHHCCCEEEEECCEECHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCC-CCCEEEEECC--CCE T ss_conf 6785102368767755873799523332879999999999730888158999998073354898-9888989889--973 Q ss_pred HH Q ss_conf 54 Q gi|254780336|r 414 LA 415 (488) Q Consensus 414 ia 415 (488) |- T Consensus 203 VV 204 (233) T 1fsg_A 203 IV 204 (233) T ss_dssp EE T ss_pred EE T ss_conf 99 No 40 >1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding protein, pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A* Probab=98.09 E-value=1.2e-05 Score=58.49 Aligned_cols=143 Identities=18% Similarity=0.257 Sum_probs=96.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHC----CCCEEHHEECCCCCCCEEEECCHHHHHHH Q ss_conf 0372899999999999987486-567720120012047799999981----99600100117653210110644677765 Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESP-VIADIVVPIPDGGVPAAIGYAKES----GIPFEQGIIRNHYVGRTFIEPSHHIRAFG 343 (488) Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~-~~~DiV~~VPdsg~~aA~gya~~~----gip~~~~lvkn~y~gRtFI~p~~~~R~~~ 343 (488) ++...+...=.+|+.++.+... .+..+++||...|.+.|--..+.+ +.|+..+.+.-.+..-+.=. +...... T Consensus 8 ~~~~~I~~~i~~lA~qI~e~~~~~~~~vligil~Gg~~fa~~L~~~l~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~ 85 (181) T 1a3c_A 8 LDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSK--KTSNDEP 85 (181) T ss_dssp ECHHHHHHHHHHHHHHHHHHCC----CEEEEESHHHHHHHHHHHHHHHHHHSSCCEEEEEEEECCC----------CCCC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCC--CCCCCCC T ss_conf 38999999999999999986689998899987353997288999864221288741101344677425654--5567634 Q ss_pred HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEEC------CCCCCCCCCCCEECCCH-HHHHH Q ss_conf 32013432455338932897403533333888999998539-978999965------89805886565005897-88854 Q gi|254780336|r 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVA------SPMVLYPDFYGIDIPDP-TALLA 415 (488) Q Consensus 344 v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~------sPpi~~pc~yGid~p~~-~eLia 415 (488) + .+...+...++||.|+||||=+=.|.|++.+++.|++.| |+.|..+.= ..| ..|.|.|.++||. .|.+. T Consensus 86 ~-~~~~d~~~~l~gk~VliVDDIlDTG~TL~~~~~~l~~~~~~~~v~~avL~dk~~r~~~-i~~DyvGf~ipt~~~e~V~ 163 (181) T 1a3c_A 86 L-VKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELP-IRADYIGKNIPTSKSEKVM 163 (181) T ss_dssp E-EEEEECSSCCTTSEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECCCCSSS-CCCSEEEEECCCCSSCEEE T ss_pred E-EECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-CCCCEEEEECCCCCCCEEE T ss_conf 7-8614576212597899994001121899999999974389868999999828757589-7998899988899998899 No 41 >1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria, purine salvage, transition state inhibitor; HET: IRP; 2.00A {Plasmodium falciparum} SCOP: c.61.1.1 Probab=98.08 E-value=6.7e-06 Score=60.37 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=98.0 Q ss_pred CCEEEEEHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCC Q ss_conf 4200000100247430003728-999999999999874865677201200120477999999819960010011-76532 Q gi|254780336|r 252 ERMCIFEYVYFARPDSIISGRS-IYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVG 329 (488) Q Consensus 252 ~~~C~FEyIYFarpdS~~~g~~-Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~g 329 (488) ..+|+.|. |--.-++++-... +.+.=.+|+.++.+...-+.-+++||-..|.+.|--.++++..+..-..+. ..+.+ T Consensus 28 ~~f~~p~~-y~~~~~kVli~~~~I~~rI~rLA~eI~~~~~~~~~vivgIL~Gg~~Fa~dL~r~L~~~~~~~~~~~~~~~~ 106 (231) T 1cjb_A 28 DSFMIPAH-YKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLF 106 (231) T ss_dssp GGSCCCTT-TGGGEEEEEECHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETTTHHHHHHHHHHHHHHHHHHCCTTCCCCE T ss_pred HHCCCCHH-HHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 54478744-64241389128999999999999999998499976999980587999999999851020465133015667 Q ss_pred CE-EEEC---CHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--C----CCCC Q ss_conf 10-1106---44677765320134324553389328974035333338889999985399789999658--9----8058 Q gi|254780336|r 330 RT-FIEP---SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--P----MVLY 399 (488) Q Consensus 330 Rt-FI~p---~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--P----pi~~ 399 (488) -. |+.- .+......+... ......++||.|+||||=+=.|.|++.+++.|++.||++|.++.-- | .-.. T Consensus 107 ~~~~i~~~~y~~~~s~~~v~~~-~~~~~~i~gk~VLLVDDIlDTG~TL~~l~~~L~~~gpksv~vavLldKr~~r~~~i~ 185 (231) T 1cjb_A 107 GEHYVRVKSYCNDQSTGTLEIV-SEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFK 185 (231) T ss_dssp EEEEEEEEEEETTEEEEEEEEE-ESCGGGGBTCEEEEEEEEESSSHHHHHHHHHHGGGCBSEEEEEEEEEECCTTCCCCB T ss_pred CEEEEEEEECCCCCCCCCEEEE-CCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC T ss_conf 5069999924997557724672-477154540707998321003269999999997169995588844411422457999 Q ss_pred CCCCCEECCCH Q ss_conf 86565005897 Q gi|254780336|r 400 PDFYGIDIPDP 410 (488) Q Consensus 400 pc~yGid~p~~ 410 (488) |.|.|.++|.+ T Consensus 186 ~Dy~Gfeipd~ 196 (231) T 1cjb_A 186 ADFVGFSIPDH 196 (231) T ss_dssp CSEEEEEECSS T ss_pred CCEEEEECCCC T ss_conf 87899983994 No 42 >1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1dqp_A* Probab=98.02 E-value=1.1e-06 Score=66.02 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=82.2 Q ss_pred HHHHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHCCCC Q ss_conf 99999999999987486--5677201200120477999999819960010011-76532101106446777653201343 Q gi|254780336|r 274 IYVSRRNMGKNLAKESP--VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLKHSA 350 (488) Q Consensus 274 Vy~~R~~lG~~La~~~~--~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K~~~ 350 (488) +...=.++++++.+... -+..++++|-..|.+.|--..+++++|++..+++ ..|.|-+ ... .++ .... T Consensus 41 I~~~v~elA~qIne~Yk~~~~~lvvV~VLkG~~~FaadL~r~L~~~~~idfi~vsSY~g~~------s~g--~v~-i~~~ 111 (230) T 1dqn_A 41 CKALAADTARRMNEYYKDVAEPVTLVALLTGAYLYASLLTVHLTFPYTLHFVKVSSYKGTR------QES--VVF-DEED 111 (230) T ss_dssp HHHHHHHHHHHHHHHHTTCSSCEEEEEETTTHHHHHHHHHTTCCSCEEEEEECCEEEECSS------CEE--EEC-CHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCC------CCC--EEE-EECC T ss_conf 9999999999999985145998599998467799999999757998389999997608987------564--225-6227 Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 245533893289740353333388899999853997899996 Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) ++..++||+|+||||=+=.|.|++.+++.|+.+||+.+.+.. T Consensus 112 l~~~i~gk~VLIVDDIiDTG~TL~~l~~~L~~~~~~Sv~v~~ 153 (230) T 1dqn_A 112 LKQLKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFVKD 153 (230) T ss_dssp HHHHHHCSSEEEEEEEESSSHHHHHHHHHSTTCEEEEEEESC T ss_pred CCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 641238974899743671744699999877508986899954 No 43 >3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A* Probab=98.01 E-value=1.9e-05 Score=57.08 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=86.4 Q ss_pred HHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH Q ss_conf 99999999987---486567720120012047799999981996001001176532101106446777653201343245 Q gi|254780336|r 277 SRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488) Q Consensus 277 ~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488) .+..++..+++ +...+.|+|+|+|-.|+|.|...|..+++|+. ++|..-. ..-+. +. .-.. T Consensus 70 ~~~~i~~~~~~~i~~~~~~~d~i~G~~~~Gi~~a~~ia~~l~~p~~--~vRK~~K--------~~G~~-----~~-ieg~ 133 (234) T 3m3h_A 70 VRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMC--YVRSKAK--------GHGKG-----NQ-IEGK 133 (234) T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEC---CHHHHHHHHHHHTCCEE--EEC----------------------CC-EESC T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEE--EEEECCC--------CCCCC-----CE-ECCC T ss_conf 9999999999999861888878851677799999999834585289--9972388--------87644-----01-1464 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEE Q ss_conf 53389328974035333338889999985399789999658980588656500589788854669998899987099778 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl 433 (488) ..+|++|++|||=+-.|++....|+.||++|+.-+.+.+- +|-.. . .-.|.-+..|.... T Consensus 134 ~~~G~~VlIVDDViTTG~Si~~ai~~lr~~G~~V~~v~vi-----------vdr~~---~------gg~e~l~~~Gv~~~ 193 (234) T 3m3h_A 134 AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSI-----------FTYEL---E------AGKEKLEAANVASY 193 (234) T ss_dssp CCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------EECCC---H------HHHHHHHHTTCCEE T ss_pred CCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECCC---H------HHHHHHHHCCCCEE T ss_conf 4579559998530034722799999999789979999999-----------98774---4------06999996799789 Q ss_pred EEECHHHHHHHH Q ss_conf 883398999861 Q gi|254780336|r 434 GFLSVDGLYNAI 445 (488) Q Consensus 434 ~yls~e~l~~ai 445 (488) .-++++++.+.+ T Consensus 194 sL~t~~dl~~~~ 205 (234) T 3m3h_A 194 SLSDYSALTEVA 205 (234) T ss_dssp ESSCHHHHHHHH T ss_pred EECCHHHHHHHH T ss_conf 977699999999 No 44 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=97.99 E-value=5.3e-06 Score=61.10 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=88.9 Q ss_pred HHHHCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHH----HHHH-------H------H- Q ss_conf 98748656772012001204-77999999819960010011765321011064467----7765-------3------2- Q gi|254780336|r 285 LAKESPVIADIVVPIPDGGV-PAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHI----RAFG-------V------K- 345 (488) Q Consensus 285 La~~~~~~~DiV~~VPdsg~-~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~----R~~~-------v------~- 345 (488) +.++.+-..+.|+-.||.|- .-|..||+.++.++.- +.|.|....+-+..+... |... + . T Consensus 183 ~~~~~~~~~~~VvVsPD~Ga~kRa~~~a~~L~~~~~~-~~k~r~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~e~ 261 (379) T 2ji4_A 183 IQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAV-IHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEK 261 (379) T ss_dssp HHHHSTTGGGEEEEESSGGGHHHHHHHHHHTTCEEEE-EC---------------------------------------- T ss_pred HHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEE-EEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9985156567646438977899999999985999689-987621455423204457754332112354433344576642 Q ss_pred HCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHH Q ss_conf 01343245533893289740353333388899999853997899996589805886565005897888546699988999 Q gi|254780336|r 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425 (488) Q Consensus 346 ~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~ 425 (488) .+++ +-..++||.+|+|||=|=.|.|+...++.||+.||++|++..+-+-...++.--+.-+.-++++.-| |+..-. T Consensus 262 ~~~~-viGDVkGk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~~l~~s~i~~Iv~Tn--TIp~~~ 338 (379) T 2ji4_A 262 PPIT-VVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTN--TIPHEV 338 (379) T ss_dssp -CCC-EESCCTTSEEEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEEEECCCTTHHHHHHHSSCCEEEEES--SSCCHH T ss_pred CCCE-EEECEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECC--CCCCCH T ss_conf 1000-2301200389995434331266999999999769983799997976881699999728999899868--867873 Q ss_pred HHHCCCEEEEECHHHHH-HHH Q ss_conf 87099778883398999-861 Q gi|254780336|r 426 NFIGVDSLGFLSVDGLY-NAI 445 (488) Q Consensus 426 ~~igadsl~yls~e~l~-~ai 445 (488) +.+..+.+..+|+..|. +|| T Consensus 339 ~~~~~~Ki~vlsVa~llA~aI 359 (379) T 2ji4_A 339 QKLQCPKIKTVDISMILSEAI 359 (379) T ss_dssp HHHTCTTEEEECCHHHHHHHH T ss_pred HHCCCCCCEEEEHHHHHHHHH T ss_conf 562589819988399999999 No 45 >2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1 Probab=97.90 E-value=4.7e-05 Score=54.31 Aligned_cols=134 Identities=15% Similarity=0.235 Sum_probs=89.3 Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324 Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488) Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488) +.+..++..+++ +...+.|.|+|+|-.|+|.|-..|..+++|+- ++|..- ...-....+. - T Consensus 49 ~~~~~i~~~~~~~i~~~~~~~d~i~G~~~~gipla~~ia~~~~~p~~--~vRKe~--------K~hG~~~~ie------G 112 (211) T 2aee_A 49 KTRDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFA--YIRSKP--------KDHGAGNQIE------G 112 (211) T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHHTCCEE--EECSSC--------C----CCSEE------S T ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCE--EEECCC--------CCCCHHHHHH------C T ss_conf 89999999999888750555363403134469999999997579823--554134--------5533123221------0 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488) ...+|++|++|||-|-.|.++...++.|+++|+.=+.+.+- +|-.. . .-.|.-+..|..- T Consensus 113 ~~~~g~~VliVEDViTTG~S~~~ai~~l~~~g~~V~~~~vi-----------vdr~~---~------~~~~~l~~~gi~~ 172 (211) T 2aee_A 113 RVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAI-----------FTYEL---P------KASQNFKEAGIKL 172 (211) T ss_dssp CCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEE-----------EECCC---H------HHHHHHHHHTCCE T ss_pred CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECCC---H------HHHHHHHHCCCCE T ss_conf 13799989998530456721576544688749806699999-----------98886---1------6899999669969 Q ss_pred EEEECHHHHHHHH Q ss_conf 8883398999861 Q gi|254780336|r 433 LGFLSVDGLYNAI 445 (488) Q Consensus 433 l~yls~e~l~~ai 445 (488) ..-.++++|.+.+ T Consensus 173 ~sl~t~~~ll~~~ 185 (211) T 2aee_A 173 ITLSNYTELIAVA 185 (211) T ss_dssp EESCCHHHHHHHH T ss_pred EEECCHHHHHHHH T ss_conf 9956599999999 No 46 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Probab=97.84 E-value=2.9e-05 Score=55.85 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=85.6 Q ss_pred CCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH Q ss_conf 7720120012047-799999981996001001176532101106446777653201343245533893289740353333 Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488) Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488) .++|+--||.|-. -|..||+.+|.|+.- +-|.|.... .+ ...++-..++||.+++|||=|=.|. T Consensus 163 ~~~vvvsPD~Ga~kra~~~a~~l~~~~~~-~~K~R~~~~------------~v--~~~~~~gdV~gk~vIIVDDii~TGg 227 (326) T 2h06_A 163 RNCTIVSPDAGGAKRVTSIADRLNVDFAL-IHKERKKAN------------EV--DRMVLVGDVKDRVAILVDDMADTCG 227 (326) T ss_dssp GGCEEEESSGGGHHHHHHHHHHHTCEEEE-EEECC--------------------CCEEEESCCTTEEEEEEEEEESSCH T ss_pred CCCEEECCCCCHHHHHHHHHHHHCCCEEE-EEEEECCCC------------CE--EEEEEECCCCCCEEEEECCHHHCHH T ss_conf 67769867955799999999982897434-655524898------------14--2467621332440588641553326 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCC-CCHHHHHHHHCCCEEEEECHHHHH-HHH Q ss_conf 38889999985399789999658980588656500589788854669-998899987099778883398999-861 Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKC-SSPQEMCNFIGVDSLGFLSVDGLY-NAI 445 (488) Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~-~~~eei~~~igadsl~yls~e~l~-~ai 445 (488) |+-+.++.|++.||++|++..+-+-...++.--+.=+.-++++.-+. ...++.. ..+.+.-+|+..|. ++| T Consensus 228 Tl~~aa~~Lk~~GA~~V~~~aTHglfs~~a~e~l~~s~i~~ivvTnTIp~~~~~~---~~~ki~vlsva~llAeaI 300 (326) T 2h06_A 228 TICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMK---HCSKIQVIDISMILAEAI 300 (326) T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEECCCTTHHHHHHHSCEEEEEEETTSCCHHHHH---HCTTEEEECCHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHC---CCCCCEEEEHHHHHHHHH T ss_conf 7999999998579986568864344581799998647998899868856842434---589829988499999999 No 47 >1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1 Probab=97.80 E-value=7e-05 Score=53.11 Aligned_cols=138 Identities=18% Similarity=0.287 Sum_probs=89.7 Q ss_pred CCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHC----CCCEEHHEEC-CCCCCCEEEECCHHHHHHH Q ss_conf 37289999999999998748-6567720120012047799999981----9960010011-7653210110644677765 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKES----GIPFEQGIIR-NHYVGRTFIEPSHHIRAFG 343 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~----gip~~~~lvk-n~y~gRtFI~p~~~~R~~~ 343 (488) +-..+...=.+|+.+.++.. .-+..+++++-..|.+.|.-..+.+ +.+.....+. .+|...+ ...... T Consensus 9 s~~eI~~~I~rlA~qI~e~~~g~~~~vligi~~Gg~~fa~~L~~~l~~~~~~~~~~~~~~~~~y~~~~------~~~~~~ 82 (181) T 1ufr_A 9 NAPEMRRALYRIAHEIVEANKGTEGLALVGIHTRGIPLAHRIARFIAEFEGKEVPVGVLDITLYRDDL------TEIGYR 82 (181) T ss_dssp EHHHHHHHHHHHHHHHHHHHTSSTTEEEEEETTTHHHHHHHHHHHHHHHHCSCCCEEEEEEEC----------------- T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC------CCCCCC T ss_conf 99999999999999999966999888999960628999999999877532898635889888863644------447875 Q ss_pred HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC------CCCCCCCCCCCEECCCH-HHHH Q ss_conf 320134324553389328974035333338889999985399-78999965------89805886565005897-8885 Q gi|254780336|r 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVA------SPMVLYPDFYGIDIPDP-TALL 414 (488) Q Consensus 344 v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~------sPpi~~pc~yGid~p~~-~eLi 414 (488) ...+-......++||+|+||||=+=.|.|++.+++.|.+.|+ +.|.++.- .-| ..|.|.|.++||. +|.+ T Consensus 83 ~~~~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~l~~~g~~~~v~~avL~kk~~r~~~-i~~DyvGf~ipt~~~e~v 160 (181) T 1ufr_A 83 PQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYLAVLVDRGHRELP-IRADFVGKNVPTSRSEVV 160 (181) T ss_dssp CEEEEEEECSCCTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECCCCSSS-BCCSEEEEECCCCTTCEE T ss_pred CEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCCEEEEECCCCCCCEE T ss_conf 244135677665685699984202656069999999987399956999999738767489-799889998889999889 No 48 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Probab=97.78 E-value=6.1e-06 Score=60.62 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=86.2 Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCE Q ss_conf 999987486567720120012047-7999999819960010011765321011064467776532013432455338932 Q gi|254780336|r 282 GKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 (488) Q Consensus 282 G~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~v 360 (488) ...+.+. .. .+.|+--||.|-. -|..||+.+|.|+.- +-|.|-. ++ .+ +..++...++||.+ T Consensus 157 ~~~~~~~-~~-~~~vvvsPD~Ga~kra~~~A~~l~~~~~~-~~K~R~~------~~------~v--~~~~~~gdv~gr~v 219 (319) T 3dah_A 157 LGDLRKQ-NY-PDLLVVSPDVGGVVRARALAKQLNCDLAI-IDKRRPK------AN------VA--EVMNIIGEVEGRTC 219 (319) T ss_dssp HHHHHTT-CC-TTEEEECCSSTTHHHHHHHHHHTTCEEEC-----------------------------------CCSEE T ss_pred HHHHHHH-CC-CCCEEECCCCCHHHHHHHHHHHCCCCEEE-EEEEECC------CC------CE--EEEECCCCCCCCEE T ss_conf 8999974-79-87389856885699999989864998899-9999189------99------36--77314434379878 Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHH Q ss_conf 89740353333388899999853997899996589805886565005897888546699988999870997788833989 Q gi|254780336|r 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDG 440 (488) Q Consensus 361 vlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~ 440 (488) |+|||=|=.|.|+-..+++|++.||++|++..+-+-...++.--+.-..-++++.-+ |+..=.+.+..+.+..+|+.. T Consensus 220 IIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THglfs~~a~e~l~~s~i~~iv~Td--Tip~~~~~~~~~k~~visva~ 297 (319) T 3dah_A 220 VIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASALDELVVTD--TIPLSAESLACPKIRALSSAG 297 (319) T ss_dssp EEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCCTTHHHHHHTSSCSEEEEES--SSCCCHHHHHCTTEEEECCHH T ss_pred EEECCHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECC--CCCCCHHHCCCCCEEEEEHHH T ss_conf 973734406201999999999779986489974664480799998618999899878--977874564589809988399 Q ss_pred HHH Q ss_conf 998 Q gi|254780336|r 441 LYN 443 (488) Q Consensus 441 l~~ 443 (488) |.. T Consensus 298 liA 300 (319) T 3dah_A 298 LLA 300 (319) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 49 >3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans} Probab=97.78 E-value=9.9e-05 Score=52.01 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324 Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488) Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488) +.+..++..+++ +...+.|+|+|+|-.|+|.|...|...++|+. +++..-.+ .-+...+ -- T Consensus 81 ~~~~~i~~~~~~~i~~~~~~~d~i~G~a~~gIp~a~~ia~~~~~p~~--~vRke~K~--------~G~~~~i------eg 144 (243) T 3dez_A 81 ETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLA--YIRSKPKD--------HGAGNQI------EG 144 (243) T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTTCCEE--EECSSCC-------------CCE------ES T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCE--EEEEEECC--------CCCCEEE------EC T ss_conf 99999999999999862245663423311218999999986179841--46764047--------7630467------30 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488) ..-+|+||++|||=|-.|+++...|+.|+++|+.=+.+.+- +|- ++.-+ .+.+ +..|+.- T Consensus 145 ~~~~g~rVlIVEDViTTGgSileai~~l~~~G~~V~~v~vi-----------vDR---~~~g~-----~~~l-~~~Gv~~ 204 (243) T 3dez_A 145 RVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAI-----------FTY---ELPKA-----TANF-EKASVKL 204 (243) T ss_dssp CCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------EEC---CCHHH-----HHHH-HHHTCCE T ss_pred CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EEC---CCCHH-----HHHH-HHCCCCE T ss_conf 35999989998511456744589999999879979999999-----------988---86217-----9999-9669979 Q ss_pred EEEECHHHHHHHH Q ss_conf 8883398999861 Q gi|254780336|r 433 LGFLSVDGLYNAI 445 (488) Q Consensus 433 l~yls~e~l~~ai 445 (488) ..-+++++|.+.. T Consensus 205 ~sL~t~~dll~~l 217 (243) T 3dez_A 205 VTLSNYSELIKVA 217 (243) T ss_dssp EESSCHHHHHHHH T ss_pred EEECCHHHHHHHH T ss_conf 9948599999999 No 50 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Probab=97.78 E-value=4.7e-05 Score=54.31 Aligned_cols=134 Identities=25% Similarity=0.219 Sum_probs=80.3 Q ss_pred CCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH Q ss_conf 720120012047-7999999819960010011765321011064467776532013432455338932897403533333 Q gi|254780336|r 294 DIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488) Q Consensus 294 DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488) +.|+--||.|-. -|..||+.+|.||.- +-|.|... + .+. ...+...++||.+|+|||=|=.|.| T Consensus 168 ~~vvVaPD~Ga~~ra~~~A~~l~~~~~~-~~K~R~~~-~-----------~v~--~~~~~gdV~gk~vIIVDDii~TGgT 232 (317) T 1dku_A 168 DIVIVSPDHGGVTRARKLADRLKAPIAI-IDKRRPRP-N-----------VAE--VMNIVGNIEGKTAILIDDIIDTAGT 232 (317) T ss_dssp SEEEEESSGGGHHHHHHHHHHTTCCEEE-EECC-----------------------CEEESCCTTCEEEEECSEESSCHH T ss_pred CCEEECCCCCHHHHHHHHHHHCCCCEEE-EEEEECCC-C-----------CEE--EECCCCCCCCCEEEEECCCCCCCCH T ss_conf 5547789943799999999982999899-99870799-9-----------413--4001235479789986750014601 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHH-HHH Q ss_conf 8889999985399789999658980588656500589788854669998899987099778883398999-861 Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLY-NAI 445 (488) Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~-~ai 445 (488) +-...+.|+++||++|++..+-+=..-+-.--+.-+.-++++.-| |+. ..+....+.+.-+++..|. ++| T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THglfs~~A~~~l~~s~i~~iv~Tn--Tip-~~~~~~~~k~~~isva~llA~aI 303 (317) T 1dku_A 233 ITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVTN--SIK-LPEEKKIERFKQLSVGPLLAEAI 303 (317) T ss_dssp HHHHHHHHHHTTCSEEEEECSEECCCTTHHHHHHTSSEEEEEEET--TSC-C----CCSSEEEECCHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEECC--CCC-CHHHHCCCCEEEEEHHHHHHHHH T ss_conf 999999999769977899965343483799998607998899858--956-80352568629987399999999 No 51 >3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis} Probab=97.76 E-value=7.8e-05 Score=52.74 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=90.4 Q ss_pred HHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHC Q ss_conf 99999987---486567720120012047799999981996001001176532101106446777653201343245533 Q gi|254780336|r 280 NMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILA 356 (488) Q Consensus 280 ~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~ 356 (488) +++..+|+ +...+.|+|+|++-.|+|-|...|.+++.++.. .+.--|+-...+ ..+ ..++. .-...+ T Consensus 66 ~l~~~~a~~i~~~~~~~D~i~G~a~gGIpla~~vA~~l~~~~~~------~~p~~~~RKe~K--~hG-~~~~i-eG~~~~ 135 (232) T 3mjd_A 66 TLADYYAQLIIKSDVKYDILFGPAYKGIPLVAAISTVLALKYNI------DMPYAFDRKEAK--DHG-EGGVF-VGADMT 135 (232) T ss_dssp HHHHHHHHHHHHCCCCCSEEEECTTTHHHHHHHHHHHHHHHHCC------CCBEEEECCC----------CCE-EESCCT T ss_pred HHHHHHHHHHHHHCCCCCEEECCHHCCCHHHHHHHHHHHHHHCC------CCCEEEEECCCC--CCC-CCCCC-CCCCCC T ss_conf 99999999998627775767230202205789999999985177------887168841135--567-66643-576566 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHH-CCCCCHHHHHHHHCCCEEEE Q ss_conf 89328974035333338889999985399789999658980588656500589788854-66999889998709977888 Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLA-NKCSSPQEMCNFIGVDSLGF 435 (488) Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia-~~~~~~eei~~~igadsl~y 435 (488) |++|++|||-|-.|.|++..++.||++|++=+-+.+. +| |+|-=. +.....+++.+..|..-..- T Consensus 136 g~~VlIVDDViTTG~S~~~ai~~l~~~G~~V~~v~vi-----------vD---R~egg~~~~~~a~~~~~~~~gi~~~Sl 201 (232) T 3mjd_A 136 NKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLS-----------ID---RQEKAKDSDISATKKISQDFNIPVLAV 201 (232) T ss_dssp TCEEEEECSCCSSSHHHHHHHHHHHTTTCEEEEEEEE-----------EE---CCBCCTTSSSCHHHHHHHHHCCCEEEE T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EE---HHHCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 5515898310356857899999999869979999999-----------98---012364333368999999669869997 Q ss_pred ECHHHHHHHH Q ss_conf 3398999861 Q gi|254780336|r 436 LSVDGLYNAI 445 (488) Q Consensus 436 ls~e~l~~ai 445 (488) .+++++.+.. T Consensus 202 ~~l~di~~~~ 211 (232) T 3mjd_A 202 TNFESIFEYV 211 (232) T ss_dssp EEHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 7599999999 No 52 >2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A* Probab=97.71 E-value=0.00016 Score=50.57 Aligned_cols=139 Identities=20% Similarity=0.262 Sum_probs=92.2 Q ss_pred HHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCC---------CCEEHHEECCCCCCCEEEECCHHHHHHHH Q ss_conf 99999999987---4865677201200120477999999819---------96001001176532101106446777653 Q gi|254780336|r 277 SRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESG---------IPFEQGIIRNHYVGRTFIEPSHHIRAFGV 344 (488) Q Consensus 277 ~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~g---------ip~~~~lvkn~y~gRtFI~p~~~~R~~~v 344 (488) ...+++..++. +...+.|+|+|+|-.|+|-|...|.+++ +|+. ++|. ..+ +.+- T Consensus 49 ~l~~l~~~~~~~i~~~~~~~d~I~G~a~gGIPla~~va~~l~~~~~~~~~~~p~~--~~Rk----------e~K--~hG~ 114 (226) T 2ps1_A 49 LLSNLATAYAIAIIQSDLKFDVIFGPAYKGIPLAAIVCVKLAEIGGSKFQNIQYA--FNRK----------EAK--DHGE 114 (226) T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEECTTTHHHHHHHHHHHHHHHSTTTTTTCEEE--EEEE----------EEE--SSTT T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEE--EEEC----------CCC--CCCC T ss_conf 9999999999999872778543357122440778999999997410015788705--7842----------545--5677 Q ss_pred HHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHC----CCCC Q ss_conf 201343245533893289740353333388899999853997899996589805886565005897888546----6999 Q gi|254780336|r 345 KLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLAN----KCSS 420 (488) Q Consensus 345 ~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~----~~~~ 420 (488) + +.. .-...+|++|++|||=|-.|+|+...|+.||++|++=+.+.+. + +|+|.-+. .... T Consensus 115 ~-~~i-eG~~~~G~~VlIVDDViTTG~S~~eai~~l~~~G~~V~~~~vi-----------v---DR~e~g~~~~~~~~~a 178 (226) T 2ps1_A 115 G-GII-VGSALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIA-----------L---DRQEVVSTDDKEGLSA 178 (226) T ss_dssp C-EEE-EESCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------E---ECCBBSCTTCSSCCBH T ss_pred C-CEE-CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------E---ECHHCCCCCCCCCCHH T ss_conf 7-424-3754779707998610356845899999999879989999999-----------9---7112045554221017 Q ss_pred HHHHHHHHCCCEEEEECHHHHHHHH Q ss_conf 8899987099778883398999861 Q gi|254780336|r 421 PQEMCNFIGVDSLGFLSVDGLYNAI 445 (488) Q Consensus 421 ~eei~~~igadsl~yls~e~l~~ai 445 (488) .+|+.+..|..-..-.+++++.+.. T Consensus 179 ~~~~~~~~gi~v~Sl~~l~~li~~~ 203 (226) T 2ps1_A 179 TQTVSKKYGIPVLSIVSLIHIITYL 203 (226) T ss_dssp HHHHHHHHTCCEEEEEEHHHHHHHH T ss_pred HHHHHHHCCCCEEEECCHHHHHHHH T ss_conf 9999986498199973499999998 No 53 >1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A* Probab=97.70 E-value=5.9e-05 Score=53.60 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=64.3 Q ss_pred CCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH Q ss_conf 7720120012047-799999981996001001176532101106446777653201343245533893289740353333 Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488) Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488) .+.|+-.||.|-. .|..+|+.+|.|+.. +-|.|- ..-.....+....++||.+++|||=|=-|. T Consensus 155 ~~~vvvsPD~g~~kra~~~a~~l~~~~~~-~~k~r~--------------~~~~~~~~~~~gdv~g~~viIvDDii~tGg 219 (284) T 1u9y_A 155 NDPIVLAPDKGALEFAKTASKILNAEYDY-LEKTRL--------------SPTEIQIAPKTLDAKDRDVFIVDDIISTGG 219 (284) T ss_dssp SSCEEEESSGGGHHHHHHHHHHHTCCEEE-BC------------------------CCBSSCCCTTCCEEEEEEECSSSH T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCEEE-EECCCC--------------CCCEEEEECCCCCCCCCEEEEECCHHHHHH T ss_conf 68689847986578999999857663234-202345--------------664058831334556653799745454267 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 388899999853997899996589 Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sP 395 (488) |+....+.||+.||++|++..+-+ T Consensus 220 Tl~~aa~~Lk~~GA~~V~~~~THg 243 (284) T 1u9y_A 220 TMATAVKLLKEQGAKKIIAACVHP 243 (284) T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEC T ss_pred HHHHHHHHHHHCCCCEEEEEEECC T ss_conf 799999999866998699999797 No 54 >3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae} Probab=97.62 E-value=0.00027 Score=48.92 Aligned_cols=137 Identities=22% Similarity=0.217 Sum_probs=89.5 Q ss_pred HHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE----HHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH Q ss_conf 9999987---48656772012001204779999998199600----1001176532101106446777653201343245 Q gi|254780336|r 281 MGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFE----QGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488) Q Consensus 281 lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~----~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488) ++..+++ +...+.|+|+|+|-.|+|-|...|..++.++. ..+++. .. ...+.. +. +-. T Consensus 74 l~~~~~~~i~~~~~~~D~I~G~a~gGIpla~~vA~~l~~~~~~~~p~~~~Rk----------e~--K~~G~~-~~--ieG 138 (238) T 3n2l_A 74 LGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRK----------EA--KNHGEG-GN--LVG 138 (238) T ss_dssp HHHHHHHHHHHHTCCCSEEEECTTTHHHHHHHHHHHHHHHSCCCCBEEEECC----------C-----------C--EEE T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC----------CC--CCCCCC-CC--CCC T ss_conf 9999999998728774568413223047789999999981398876399952----------66--455657-41--015 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEE Q ss_conf 53389328974035333338889999985399789999658980588656500589788854669998899987099778 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl 433 (488) ...+.||++|||-|-.|.+++..++.|+++|+.=+.+.+. + +|++--..+....+|+.+..|..-. T Consensus 139 ~~~~grVlIVDDViTTG~Si~~ai~~l~~~G~~V~~v~vi-----------v---DR~~gg~~~~~a~~~~~~~~gi~~~ 204 (238) T 3n2l_A 139 SKLEGRVMLVDDVITAGTAIRESMELIQANKADLAGVLVA-----------I---DRQEKGKGELSAIQEVERDFGCAVI 204 (238) T ss_dssp SCCCSEEEEECSCCSSSHHHHHHHHHHHHTTCEEEEEEEE-----------E---ECCCBCSSSSBHHHHHHHHHCCEEE T ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------E---ECCCCCCCCHHHHHHHHHHCCCEEE T ss_conf 5677767999765166845899999999879948999998-----------6---5021554202289999997498299 Q ss_pred EEECHHHHHHHHC Q ss_conf 8833989998611 Q gi|254780336|r 434 GFLSVDGLYNAIC 446 (488) Q Consensus 434 ~yls~e~l~~ai~ 446 (488) .-.+++++.+.+- T Consensus 205 Sl~tl~dl~~~l~ 217 (238) T 3n2l_A 205 SIVSLTDLITYLE 217 (238) T ss_dssp EEEEHHHHHHHHH T ss_pred EEEEHHHHHHHHH T ss_conf 9813999999999 No 55 >1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A Probab=97.21 E-value=0.0022 Score=42.44 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=85.9 Q ss_pred HHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCC----CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH Q ss_conf 99999987---4865677201200120477999999819----9600100117653210110644677765320134324 Q gi|254780336|r 280 NMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESG----IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488) Q Consensus 280 ~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~g----ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488) .++..+++ +...+.|+|+|+|-.|+|-|.+.|.+++ .++...+++....+ .-+ .+. +- T Consensus 48 ~i~~~~~~~~~~~~~~~d~i~g~a~ggipla~~va~~l~~~~~~~~p~~~~Rke~k~--------~G~-----~~~--ie 112 (213) T 1lh0_A 48 LLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKD--------HGE-----GGS--LV 112 (213) T ss_dssp HHHHHHHHHHHHHCCCCSEEECCTTTHHHHHHHHHHHHHHHHCCCCBEEEECSSCCS--------STT-----CSS--EE T ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC--------CCC-----CCC--EE T ss_conf 999999999997167756574304423889999999999843888761899504544--------677-----760--20 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488) ....+.+|++|||-|-.|.++...++.|+++|++=+.+.+- + +|++--.......+|..+..|..- T Consensus 113 G~~~~~rVliVeDViTTG~S~~e~i~~l~~~G~~V~~v~vi-----------v---DR~~g~~~~~~~~~e~~~~~Gi~~ 178 (213) T 1lh0_A 113 GSALQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLIS-----------L---DRQERGRGEISAIQEVERDYGCKV 178 (213) T ss_dssp ESCCCSEEEEECSCCSSSCHHHHHHHHHHHTTCEEEEEEEE-----------E---ECCBBCSSSSBHHHHHHHHHCCEE T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE-----------E---EECCCCCCHHHHHHHHHHHCCCEE T ss_conf 57777848999723142565899999999879979999999-----------8---742366421658999998659739 Q ss_pred EEEECHHHHHHHHC Q ss_conf 88833989998611 Q gi|254780336|r 433 LGFLSVDGLYNAIC 446 (488) Q Consensus 433 l~yls~e~l~~ai~ 446 (488) ..-++++++.+.+. T Consensus 179 ~sl~t~~dll~~l~ 192 (213) T 1lh0_A 179 ISIITLKDLIAYLE 192 (213) T ss_dssp EEEEEHHHHHHHHH T ss_pred EEECCHHHHHHHHH T ss_conf 99730999999999 No 56 >1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Probab=94.02 E-value=0.1 Score=30.55 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=59.7 Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHH Q ss_conf 20120012047799999981996001001176532101106446777653201343245533893289740353333388 Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSV 374 (488) Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k 374 (488) ++++|.-+|.+-..|+.+-+-- -..|.+-=.....|+ .-+..++-+++.++++.|+|.|.=+-.|.|+- T Consensus 73 ~~V~IlRAG~~m~~g~~~~~p~-a~ig~i~~~R~~~t~----------~p~~yy~kLP~~i~~~~villDPmlATG~s~~ 141 (209) T 1i5e_A 73 GVIPILRAGIGMVDGILKLIPA-AKVGHIGLYRDPQTL----------KPVEYYVKLPSDVEERDFIIVDPMLATGGSAV 141 (209) T ss_dssp EEEEBTTGGGGGHHHHHHHCTT-SEECEEEEECCTTCS----------SCEEEEEECCTTTTTSEEEEECSEESSSHHHH T ss_pred EEEECCCCCCHHHHHHHHHCCC-CCCCEEEEECCCCCC----------CCEEEEEECCCCCCCCEEEEECHHHHCCHHHH T ss_conf 8984054533478899985867-600534653046888----------73876243586510386897586886477799 Q ss_pred HHHHHHHHCCCCEEEEEE Q ss_conf 899999853997899996 Q gi|254780336|r 375 KIVQMIRSAGASEVHLRV 392 (488) Q Consensus 375 ~iv~~lr~aGa~evh~ri 392 (488) ..++.|++.|+++|++.+ T Consensus 142 ~ai~~L~~~G~~~I~~vs 159 (209) T 1i5e_A 142 AAIDALKKRGAKSIKFMC 159 (209) T ss_dssp HHHHHHHHTTCCCEEEEC T ss_pred HHHHHHHHCCCCCEEEEE T ss_conf 999999966998579999 No 57 >2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli} Probab=91.30 E-value=0.16 Score=29.10 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=55.9 Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHH Q ss_conf 20120012047799999981996001001176532101106446777653201343245533893289740353333388 Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSV 374 (488) Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k 374 (488) ++++|--+|.+-..|+.+.+- . .-+|.-.+..+. .. .....-++-+++.+.++.|+|+|.=+--|.|+- T Consensus 72 ~~V~ILRAGl~m~~g~~~~~P--~-------a~~g~i~~~r~~-~t-~~~~~y~~klP~~~~~~~villDPmlATG~s~~ 140 (208) T 2ehj_A 72 TVVPILRAGLGMMDGVLENVP--S-------ARISVVGMYRNE-ET-LEPVPYFQKLVSNIDERMALIVDPMLATGGSVI 140 (208) T ss_dssp EEEEBTTGGGGGHHHHHHHCT--T-------CEECEEEEEECT-TT-CCEEEEEEECCSCGGGCEEEEEEEEESSCHHHH T ss_pred EEEEEECCHHHHHHHHHHHCC--C-------CEEEEEEEECCC-CC-CCCEEEEEECCCCCCCCEEEEECHHHHCCHHHH T ss_conf 999840432258999987365--3-------504266422267-77-885788986144566676999683674567799 Q ss_pred HHHHHHHHCCCCEEEEEE Q ss_conf 899999853997899996 Q gi|254780336|r 375 KIVQMIRSAGASEVHLRV 392 (488) Q Consensus 375 ~iv~~lr~aGa~evh~ri 392 (488) ..++.|++.|+++|++.. T Consensus 141 ~ai~~L~~~G~~~I~iv~ 158 (208) T 2ehj_A 141 ATIDLLKKAGCSSIKVLV 158 (208) T ss_dssp HHHHHHHHTTCCEEEEEE T ss_pred HHHHHHHHCCCCCEEEEE T ss_conf 999999857998289999 No 58 >1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Probab=90.79 E-value=0.16 Score=29.23 Aligned_cols=85 Identities=25% Similarity=0.365 Sum_probs=57.0 Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCEEH-HEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH Q ss_conf 201200120477999999819-96001-0011765321011064467776532013432455338932897403533333 Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESG-IPFEQ-GIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488) Q Consensus 295 iV~~VPdsg~~aA~gya~~~g-ip~~~-~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488) ++++|--+|.+-..|+.+.+- .+... ++-+|. .|+- ...-++-+++.+.++.|+|+|-=+-.|.| T Consensus 85 ~~V~ILRaGl~m~~g~~~~~P~a~~g~i~i~r~~---~t~~----------~~~yy~klP~~~~~~~VillDPmlATG~s 151 (221) T 1o5o_A 85 VVVPILRAGLVMADGILELLPNASVGHIGIYRDP---ETLQ----------AVEYYAKLPPLNDDKEVFLLDPMLATGVS 151 (221) T ss_dssp EEEEEETTHHHHHHHHHHHSTTCEECEEEEEECT---TTCC----------EEEEEEECCCCCTTCEEEEECSEESSSHH T ss_pred EEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECC---CCCC----------CEEEEEECCCCCCCCEEEEEHHHHHCCHH T ss_conf 8988405664077899997787641378887358---8888----------18750107866346728987788647712 Q ss_pred HHHHHHHHHHCCCCEEEEEE Q ss_conf 88899999853997899996 Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 373 ~k~iv~~lr~aGa~evh~ri 392 (488) +-..++.|++.|+++|++.. T Consensus 152 ~~~ai~~L~~~G~~~I~~v~ 171 (221) T 1o5o_A 152 SIKAIEILKENGAKKITLVA 171 (221) T ss_dssp HHHHHHHHHHTTCCEEEEEC T ss_pred HHHHHHHHHHCCCCEEEEEE T ss_conf 99999999865997089999 No 59 >1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Probab=89.49 E-value=0.13 Score=29.84 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=41.2 Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE--EEEE--ECCCC Q ss_conf 13432455338932897403533333888999998539978--9999--65898 Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE--VHLR--VASPM 396 (488) Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e--vh~r--i~sPp 396 (488) -|+-+++.+.++.|+|+|.=+-.|.|+-..++.|++.|+++ |++. ++||+ T Consensus 146 yy~klP~~i~~~~Vll~DPMLATG~S~~~ai~~L~~~Gv~~~~I~~vsvias~~ 199 (243) T 1bd3_D 146 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQ 199 (243) T ss_dssp EEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCCGGGEEEEEEEECHH T ss_pred EHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEECHH T ss_conf 142284211014589868055057229999999997199854079999986589 No 60 >1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1 Probab=87.99 E-value=0.29 Score=27.32 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=40.3 Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 1343245533893289740353333388899999853997899996 Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) -++-+++.+.++.|+|.|.=+-.|.|+-..++.|++.|++.|++.+ T Consensus 113 ~~~klP~~i~~~~vil~DPmlATG~s~~~ai~~Lk~~g~~~I~~v~ 158 (208) T 1v9s_A 113 YYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMA 158 (208) T ss_dssp EEEECCSCGGGSCEEEECSEESSSHHHHHHHHHHHHTTCCSCEEEE T ss_pred EEEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 9997376513577999683663437799999999865998469999 No 61 >2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus} Probab=86.46 E-value=0.31 Score=27.09 Aligned_cols=104 Identities=23% Similarity=0.190 Sum_probs=63.6 Q ss_pred HHHHH---HHHHHHHHHHCCCC---------------------CC--CCCCCCCCHHHHHHHHHHHC-CCCEEHHEE-CC Q ss_conf 99999---99999998748656---------------------77--20120012047799999981-996001001-17 Q gi|254780336|r 274 IYVSR---RNMGKNLAKESPVI---------------------AD--IVVPIPDGGVPAAIGYAKES-GIPFEQGII-RN 325 (488) Q Consensus 274 Vy~~R---~~lG~~La~~~~~~---------------------~D--iV~~VPdsg~~aA~gya~~~-gip~~~~lv-kn 325 (488) ..++| .++|+.|+.|.--+ .+ +++++--+|.+-..|+.+.. ..+.....+ +| T Consensus 24 ~~~Fr~~~~rl~~~L~~Eal~~l~~~~~~V~Tp~g~~~~~~~~~~~i~~V~ILRaGl~m~~~~~~~~P~a~ig~i~i~rd 103 (208) T 2e55_A 24 AEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRN 103 (208) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEETTEEEEEEECCGGGEEEEEEETTTHHHHHHHHHHSTTCEECEEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCC T ss_conf 78999999999999999998178752359778993387665236645899982455317777997488873468762257 Q ss_pred CCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 653210110644677765320134324553389328974035333338889999985399789999 Q gi|254780336|r 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 326 ~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) . .|+ ....-++-+++ +.++.|+|+|-=+=.|.|+...++.|++.|++.|.+. T Consensus 104 ~---~t~----------~p~~yy~klP~-~~~~~vlllDPmlATG~s~~~ai~~L~~~g~~~I~~v 155 (208) T 2e55_A 104 E---ETL----------ESHIYYSRLPE-LKGKIVVILDPMLATGGTLEVALREILKHSPLKVKSV 155 (208) T ss_dssp T---TTC----------CEEEEEEECCC-CBTSEEEEECSEESSSHHHHHHHHHHHTTCBSEEEEE T ss_pred C---CCC----------CCEEHHHHHHH-HCCCCEEEECHHHCCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 7---678----------71233554553-0357069834676157159999999984488617999 No 62 >2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, protein structure initiative NDRT; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Probab=86.17 E-value=0.8 Score=24.20 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.1 Q ss_pred CCCCCC--------CCCCHHHHHHHHHHHCCCCEEH Q ss_conf 772012--------0012047799999981996001 Q gi|254780336|r 293 ADIVVP--------IPDGGVPAAIGYAKESGIPFEQ 320 (488) Q Consensus 293 ~DiV~~--------VPdsg~~aA~gya~~~gip~~~ 320 (488) +|+|+. -||+|...-+|||.++|+|.-- T Consensus 68 ~D~via~Ld~f~g~~~D~GT~~EiG~A~algKPVv~ 103 (161) T 2f62_A 68 CDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLT 103 (161) T ss_dssp CSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEE T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 999999923777999998889999999987995999 No 63 >3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis} Probab=84.36 E-value=1.6 Score=21.97 Aligned_cols=28 Identities=39% Similarity=0.631 Sum_probs=22.8 Q ss_pred CCCCCCC-----CCCCHHHHHHHHHHHCCCCEE Q ss_conf 6772012-----001204779999998199600 Q gi|254780336|r 292 IADIVVP-----IPDGGVPAAIGYAKESGIPFE 319 (488) Q Consensus 292 ~~DiV~~-----VPdsg~~aA~gya~~~gip~~ 319 (488) ++|+|+. .||+|..+-+|||.++|+|.- T Consensus 69 ~aD~via~ldg~~~D~GT~~EiG~A~algkpvi 101 (162) T 3ehd_A 69 ASDLLVALLDGPTIDAGVASEIGVAYAKGIPVV 101 (162) T ss_dssp TCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEE T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEE T ss_conf 699999984899999888999999998699599 No 64 >1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Probab=82.77 E-value=1.3 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.8 Q ss_pred CCCCCCC-----CCCCHHHHHHHHHHHCCCCEEH Q ss_conf 6772012-----0012047799999981996001 Q gi|254780336|r 292 IADIVVP-----IPDGGVPAAIGYAKESGIPFEQ 320 (488) Q Consensus 292 ~~DiV~~-----VPdsg~~aA~gya~~~gip~~~ 320 (488) ++|+|+. .||+|...-+|||-++|+|.-- T Consensus 81 ~~D~viA~ldg~~~D~GTa~ElG~A~algKPvv~ 114 (167) T 1s2d_A 81 NATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVIL 114 (167) T ss_dssp HCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEE T ss_pred HCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 6999999958998983189999999986994899 No 65 >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Probab=82.11 E-value=1.5 Score=22.27 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=24.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 53389328974035333338889999985399789999 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) .++|+||++|||+- ++.+.+.++|+..|. +|... T Consensus 4 ~~~g~rILvVDD~~---~~~~~l~~~L~~~g~-~v~~a 37 (136) T 1dcf_A 4 NFTGLKVLVMDENG---VSRMVTKGLLVHLGC-EVTTV 37 (136) T ss_dssp CCTTCEEEEECSCH---HHHHHHHHHHHHTTC-EEEEE T ss_pred CCCCCEEEEEECCH---HHHHHHHHHHHHCCC-EEEEE T ss_conf 89999999993989---999999999998799-99998 No 66 >2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=80.77 E-value=1.6 Score=22.10 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=37.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--|+|-|...++++||.+....|++.+...| T Consensus 63 L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~~V~L~v~r~p 105 (108) T 2d92_A 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108) T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 9969999999999988998999999996289986999999489 No 67 >1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Probab=79.67 E-value=0.91 Score=23.81 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=39.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 533893289740353333388899999853997899996589805 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488) +-.|.+|+=|++.-|++.|...++++||.++-..|.+.+..|+=. T Consensus 54 L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~~v~l~v~~~~~~ 98 (111) T 1vae_A 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDS 98 (111) T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCC T ss_conf 988999999999998999899999998768998689999787788 No 68 >2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Probab=77.78 E-value=1.8 Score=21.72 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=38.2 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+=|++--|+|.|...++++||.++...|.+.+-+|. T Consensus 62 L~~GD~Il~INg~~v~~~t~~evv~~lr~~~~~~v~L~Vv~~~ 104 (109) T 2vsv_A 62 AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 8999999999999989998999999987789974899997877 No 69 >2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Probab=76.98 E-value=3 Score=20.07 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=35.7 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEE-CCCCC Q ss_conf 5338932897403533333888999998539-97899996-58980 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRV-ASPMV 397 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri-~sPpi 397 (488) +-.|.+|+=|++--|+|-|...++++||++. ...|.+++ -+||| T Consensus 56 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~l~v~~~pPv 101 (101) T 2yt7_A 56 LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPPV 101 (101) T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCC T ss_conf 9879999999999988998999999997499999899999838999 No 70 >2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=74.37 E-value=3.5 Score=19.63 Aligned_cols=41 Identities=29% Similarity=0.528 Sum_probs=36.4 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 338932897403533333888999998539978999965898 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -.|.+|+-|++-=|++.|...++++|++++. +|.+.+.-|+ T Consensus 58 ~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~-~v~L~v~r~~ 98 (104) T 2djt_A 58 EVGDLVLHINGESTQGLTHAQAVERIRAGGP-QLHLVIRRPL 98 (104) T ss_dssp CTTCBEEEETTEECTTCCHHHHHHHHHHTCS-EEEEEECCCC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC T ss_conf 9999999999999889989999999975899-7999998699 No 71 >1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A* Probab=73.88 E-value=3 Score=20.15 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=52.9 Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCEE-HHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH-HCCCCEEEEEHHHHHHH Q ss_conf 201200120477999999819-9600-10011765321011064467776532013432455-33893289740353333 Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESG-IPFE-QGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI-LAGKRVVLIDDSIVRGT 371 (488) Q Consensus 295 iV~~VPdsg~~aA~gya~~~g-ip~~-~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~-i~gk~vvlvDDSIVRGt 371 (488) +++++--+|.+-..|+.+-+- .+.. -++.+|.-.+.. .| .......=|+-+++. -+...|+|.|.=+-.|. T Consensus 74 ~~V~ILRAGl~m~~~~~~~~p~a~~g~ig~~r~e~~~~~--~~----~t~~~~~yy~klP~~~~~~~~villDPmlATG~ 147 (216) T 1xtt_A 74 VIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKE--VP----KDMDVYIYYKKIPDIRAKVDNVIIADPMIATAS 147 (216) T ss_dssp EEEEEETTTHHHHHHHHHHCTTCEEEEEEEEECCCCCSS--CC----SCCCEEEEEEECCCCCTTTCEEEEECSEESSSH T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCC--CC----CCCCEEEEECCCCCCCCCCCEEEEECHHHHCHH T ss_conf 897310010237888997189974556666860356767--86----665606540008674234533897274775418 Q ss_pred HHHHHHHHHHHCCCCEEEEE Q ss_conf 38889999985399789999 Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 372 T~k~iv~~lr~aGa~evh~r 391 (488) |+-..++.|++.|+++|++. T Consensus 148 s~~~ai~~L~~~g~~~I~~v 167 (216) T 1xtt_A 148 TMLKVLEEVVKANPKRIYIV 167 (216) T ss_dssp HHHHHHHHHGGGCCSEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEE T ss_conf 89999999874599538999 No 72 >2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=70.88 E-value=4 Score=19.21 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=36.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--|++.|...++++||+++ .+|.+.+...| T Consensus 49 l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~L~v~r~P 90 (93) T 2dkr_A 49 LKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90 (93) T ss_dssp CCTTCBEEEETTEECTTSCHHHHHHHHHHCC-SEEEEEECCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 9989999999999989998999999998299-92999999089 No 73 >1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 Probab=70.51 E-value=4.9 Score=18.56 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=55.9 Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEEE--------C-C---HHHHHHHHHHCCCCCHHHHCCCCEEEE Q ss_conf 012047799999981996001001176532----10110--------6-4---467776532013432455338932897 Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFIE--------P-S---HHIRAFGVKLKHSANRTILAGKRVVLI 363 (488) Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI~--------p-~---~~~R~~~v~~K~~~~~~~i~gk~vvlv 363 (488) |.+|..+|.-+.+..|+||... ...+| +.|+. + . .++|.+... .+.-.+..+.||++.+. T Consensus 243 ~~~~~~~A~~L~~~~GiPyi~~---~~p~G~~~t~~~l~~l~~~~G~~~~~~i~~er~~~~~-~~~~~~~~l~gkrv~I~ 318 (458) T 1mio_B 243 SYASDLGAKTLEKKCKVPFKTL---RTPIGVSATDEFIMALSEATGKEVPASIEEERGQLID-LMIDAQQYLQGKKVALL 318 (458) T ss_dssp HHHHHHHHHHHHHHSCCCEEEE---CCCBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHTHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEC---CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCEEEEE T ss_conf 5565789999999869987855---8876878999999999999689817878876999999-99999997289889998 Q ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 403533333888999998539978999965898 Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -|+ +..-.+.+.|++.|..-+.+...+++ T Consensus 319 ~~~----~~~~~l~~~L~elG~~~~~~~~~~~~ 347 (458) T 1mio_B 319 GDP----DEIIALSKFIIELGAIPKYVVTGTPG 347 (458) T ss_dssp ECH----HHHHHHHHHHHTTTCEEEEEEESSCC T ss_pred CCC----HHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 982----88999999999839900389837898 No 74 >1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe} Probab=70.44 E-value=4.9 Score=18.55 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=16.5 Q ss_pred CEEEEEEEEEECCH--HHHHHHHHHCCCCC Q ss_conf 71999996550878--99999998649824 Q gi|254780336|r 109 GGIAIAHNGNFTNG--LTLRKKLISSGAIF 136 (488) Q Consensus 109 g~iaiaHNGnI~N~--~eLr~~L~~~g~~f 136 (488) .+.-|+...++.+. +.+.+.|.+.|..+ T Consensus 92 kr~LIVtd~~~~~~~~~~v~~~L~~~gi~v 121 (450) T 1ta9_A 92 KSAVVLADQNVWNICANKIVDSLSQNGMTV 121 (450) T ss_dssp SEEEEEEEHHHHHHTHHHHHHHHHHTTCEE T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCEE T ss_conf 969999892488999999999998769979 No 75 >2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=70.01 E-value=3.9 Score=19.31 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=35.7 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--|.+-|...++++||+++ .+|.+.+...| T Consensus 50 L~~GD~Il~VNg~~v~~~s~~evv~ll~~~~-~~v~L~V~r~p 91 (94) T 2eeg_A 50 LCPGDLIQAINGESTELMTHLEAQNRIKGCH-DHLTLSVSSGP 91 (94) T ss_dssp CCTTCEEEEETTEETTTCCHHHHHHHHHTCC-SCEEEEEECCS T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 9999999989999999998999999997699-84999999289 No 76 >2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=69.25 E-value=3.9 Score=19.27 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=34.8 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--|+|-|...++++||+++ .+|.+.+.-+| T Consensus 57 L~~GD~Il~INg~~v~~~~~~~v~~llk~~~-~~v~l~v~r~~ 98 (111) T 2dlu_A 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVARDP 98 (111) T ss_dssp CCSSCEEEEESSCCCTTSCHHHHHHHHHHHC-SEEEEEEEESC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 8689999999999978998999999997599-85999999799 No 77 >1vk9_A Conserved hypothetical protein TM1506; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3 Probab=69.12 E-value=1.8 Score=21.75 Aligned_cols=31 Identities=19% Similarity=0.560 Sum_probs=22.5 Q ss_pred HHHHH-HCCEEEEEEECCEEEEEEECCCCCEEE Q ss_conf 99865-304399996399799998256654159 Q gi|254780336|r 164 SLRHV-QGAYAMLALTRTKLIATRDPIGIRPLI 195 (488) Q Consensus 164 ~l~~l-~Gayslv~l~~~~l~~~RDp~GiRPL~ 195 (488) +++.+ .+.||++++.++.++.+.+ .|+|||+ T Consensus 21 a~~LL~e~~~S~vv~~g~~i~ts~~-rGvkpL~ 52 (151) T 1vk9_A 21 ALKIFEKKDLSLLAYSGRSIFESKD-SGLKPVV 52 (151) T ss_dssp HHHHHHHTTCSEEEESSSEEEEECC-STTHHHH T ss_pred HHHHHHHCCEEEEEECCCEEEEECC-CCHHHHH T ss_conf 9999971883799965999986368-6827999 No 78 >2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=68.91 E-value=3.9 Score=19.29 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=36.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 53389328974035333338889999985399789999658980 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488) +-.|.+|+-||+--|++.|...++++||.++ .+|.+.+.-|+. T Consensus 50 L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~l~v~~~~~ 92 (106) T 2eei_A 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSG-SRVMFLLVDKET 92 (106) T ss_dssp CCSSEEEEEETTEECTTCCHHHHHHHHHHHC-SEEEEEECCTTT T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCC T ss_conf 9889999999999999999999999997699-969999987897 No 79 >1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=67.94 E-value=5.1 Score=18.49 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=34.2 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+=|++--|++-|...++++||+++ .+|++.+.-++ T Consensus 55 L~~GD~Il~INg~~v~~~~~~ev~~~lk~~~-~~v~l~v~r~~ 96 (110) T 1um1_A 55 LSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVAKSD 96 (110) T ss_dssp CCTTCEEEEESSCBCSSCCHHHHHHHHHTCC-SEEEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 9999999999999978998999999998299-96999999399 No 80 >1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=65.34 E-value=6.2 Score=17.86 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=33.7 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+-|++--|++-|...++++||+++. +|++.+.-+ T Consensus 62 L~~GD~Il~INg~~v~~~~~~~v~~llr~~~~-~v~L~v~r~ 102 (114) T 1uew_A 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGL-SVTLRIIPQ 102 (114) T ss_dssp CCTTCBEEEETTBCTTTSCHHHHHHHHHHTTT-EEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEEC T ss_conf 99999999999999889979999999977998-499999958 No 81 >2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Probab=65.03 E-value=4.9 Score=18.60 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 53389328974035333338889999985399789999658980 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488) +-.|.+|+-||+--|++.|...++++|+.++. .+.+.+..|+. T Consensus 45 l~~GD~Il~VnG~~v~~~~~~ev~~~l~~~~~-~v~L~V~~~~~ 87 (91) T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGK-NVTLLVCGKKA 87 (91) T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSCS-EEEEEEEC--- T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCCC T ss_conf 99999999999999999989999999975999-69999989887 No 82 >3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} Probab=64.77 E-value=2.1 Score=21.22 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=50.5 Q ss_pred CCCCCCCCHHHHHHHHHHHC-CCCEEH-HEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH Q ss_conf 20120012047799999981-996001-0011765321011064467776532013432455338932897403533333 Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKES-GIPFEQ-GIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488) Q Consensus 295 iV~~VPdsg~~aA~gya~~~-gip~~~-~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488) +++++--+|.+-..|+.+-+ ..+... ++-+|. .| +|. .-.+. .+ .++++.|+|+|.=+--|.| T Consensus 80 ~~V~IlRAGl~m~~~~~~~~p~a~~g~i~i~r~~---~t--~~~-------~y~~~--~p-~~~~~~villDPmlATG~s 144 (217) T 3dmp_A 80 AIVPVLRAGVGMSDGLLELIPSARVGHIGVYRAD---DH--RPV-------EYLVR--LP-DLEDRIFILCDPMVATGYS 144 (217) T ss_dssp EEEEEETTTHHHHHHHHHHCTTSEECEEECSCCC---SS--SCC-------CSEEE--CC-CCTTCEEEEECSEESSSHH T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCC---CC--CCH-------HHHHC--CC-CCCCCEEEEEECCCCCCHH T ss_conf 9988613542478889986777520057401257---88--630-------07650--87-7344609999440257757 Q ss_pred HHHHHHHHHHCCCC--EEEEE Q ss_conf 88899999853997--89999 Q gi|254780336|r 373 SVKIVQMIRSAGAS--EVHLR 391 (488) Q Consensus 373 ~k~iv~~lr~aGa~--evh~r 391 (488) +-..++.|++.|++ .|++. T Consensus 145 ~~~ai~~L~~~Gv~~~~I~~v 165 (217) T 3dmp_A 145 AAHAIDVLKRRGVPGERLMFL 165 (217) T ss_dssp HHHHHHHHHTTTCCGGGEEEE T ss_pred HHHHHHHHHHCCCCCCEEEEE T ss_conf 999999999849984528999 No 83 >2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Probab=64.39 E-value=6.2 Score=17.84 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=33.6 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 33893289740353333388899999853997899996589 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) -.|.+|+-|++--|+|.|...++++||.++ .+|.+.+.-| T Consensus 53 ~~GD~Il~VNg~~v~~~~~~e~~~~lr~~~-~~v~L~v~R~ 92 (94) T 2fe5_A 53 QIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKP 92 (94) T ss_dssp CTTCEEEEETTEECTTCBHHHHHHHHHTCC-SEEEEEEECC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC T ss_conf 999999999999988998999999997399-9699999899 No 84 >2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A Probab=64.33 E-value=6.3 Score=17.81 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=36.5 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf 3389328974035333338889999985399789999658980588 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488) -.|.+|+=|++--|+|.|...++++||+++ ..|.+.+.-|-=.|- T Consensus 53 ~~GD~Il~VNg~~v~~~t~~eav~~lr~~~-~~v~L~V~R~~~~~~ 97 (105) T 2awx_A 53 QIGDKLLAVNSVSLEEVTHEEAVTALKNTS-DFVYLKVAKPTSMYI 97 (105) T ss_dssp CTTCEEEEETTEECTTCBHHHHHHHHHSCC-SEEEEEEECCCC--- T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCCCCC T ss_conf 889999999999978997999999998189-969999988877401 No 85 >1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=64.00 E-value=4.7 Score=18.73 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=35.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--|+|-|...++++||+++. .|++.+.-++ T Consensus 61 l~~GD~Il~INg~~v~~~~~~~~v~~lk~~~~-~v~L~v~R~~ 102 (108) T 1q7x_A 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ-VVHLLLEKGQ 102 (108) T ss_dssp CCSSCEEEEETTEECBSCTTSHHHHHHHHTTS-EEEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC T ss_conf 98999999999999889989999999876998-6999999898 No 86 >1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 1g20_A* 1g21_A* 3k1a_A* 1fp4_A* 1qgu_A* 1qh1_A* 1qh8_A* 1h1l_A* Probab=63.49 E-value=6.7 Score=17.62 Aligned_cols=89 Identities=20% Similarity=0.177 Sum_probs=56.0 Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC------------CEEEE--CCHH-----HHHHHHHHCCCCCHHHH Q ss_conf 20120012047799999981996001001176532------------10110--6446-----77765320134324553 Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG------------RTFIE--PSHH-----IRAFGVKLKHSANRTIL 355 (488) Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g------------RtFI~--p~~~-----~R~~~v~~K~~~~~~~i 355 (488) +|. -|.++..+|.-+.+.-|+||-.. + ++| +-|=. |.+. .....+.-.+...+..+ T Consensus 271 iv~-~~~~~~~~A~~Lee~~GiP~i~~---~-~~G~~~T~~~Lr~ia~~~g~~~~~~~E~~Ia~e~~~~~~~l~~~~~~L 345 (491) T 1m1n_A 271 LVH-CYRSMNYISRHMEEKYGIPWMEY---N-FFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRL 345 (491) T ss_dssp EES-CHHHHHHHHHHHHHHHCCCEEEC---C-CSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEE-CHHHHHHHHHHHHHHHCCCEEEC---C-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 985-77899999999999759863302---3-587378999999999985872467899999999999999999999986 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 3893289740353333388899999853997899996 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +||++++.-| |...-.++++|++.|.+=|.+.. T Consensus 346 ~GKrv~i~~g----~~~~~~l~~~l~ElGmevv~~~~ 378 (491) T 1m1n_A 346 EGKRVMLYIG----GLRPRHVIGAYEDLGMEVVGTGY 378 (491) T ss_dssp TTCEEEECBS----SSHHHHTHHHHHTTTCEEEEEEE T ss_pred CCCEEEEECC----CCCHHHHHHHHHHCCCEEEEEEE T ss_conf 7971899678----60079999999986997999960 No 87 >2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=63.16 E-value=6.8 Score=17.58 Aligned_cols=39 Identities=28% Similarity=0.561 Sum_probs=32.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|+|.|...++++||.++-. |.+.+. T Consensus 65 L~~GD~Il~VNg~~v~~~~~~e~v~~lr~~~~~-v~L~v~ 103 (129) T 2dmz_A 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQV-VHLTLV 103 (129) T ss_dssp CCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSS-EEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE T ss_conf 998999999999998899899999999738995-999999 No 88 >1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Probab=62.64 E-value=3.6 Score=19.56 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.5 Q ss_pred CCCCCC-----CCCCCHHHHHHHHHHHCCCCEEH Q ss_conf 677201-----20012047799999981996001 Q gi|254780336|r 292 IADIVV-----PIPDGGVPAAIGYAKESGIPFEQ 320 (488) Q Consensus 292 ~~DiV~-----~VPdsg~~aA~gya~~~gip~~~ 320 (488) .+|+|+ ..||+|...-+|||.++|+|.-- T Consensus 78 ~aD~vva~l~~~~~d~Gt~~E~G~A~a~~kpvi~ 111 (157) T 1f8y_A 78 TNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLL 111 (157) T ss_dssp TSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEE T ss_pred HCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 6899999958987986679999999987996899 No 89 >1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Probab=62.35 E-value=5.6 Score=18.15 Aligned_cols=35 Identities=17% Similarity=0.035 Sum_probs=29.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 53389328974035333338889999985399789999 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) .-+++.||++++| |..+....+.|++.|-+.|++. T Consensus 55 ~~~~~~ii~~c~~---g~~s~~~a~~l~~~G~~~v~~l 89 (108) T 1gmx_A 55 NDFDTPVMVMCYH---GNSSKGAAQYLLQQGYDVVYSI 89 (108) T ss_dssp SCTTSCEEEECSS---SSHHHHHHHHHHHHTCSSEEEE T ss_pred HHCCCCEEEECCC---CHHHHHHHHHHHHCCCCCEEEE T ss_conf 3246870478899---8589999999998499577985 No 90 >3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Probab=62.09 E-value=6.8 Score=17.59 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.9 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 389328974035333338889999985399789999 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) +++.||+++.+ |+++...+++|++.|-+.|.+. T Consensus 55 ~~~~ivvyC~~---g~rs~~aa~~L~~~G~~~V~~l 87 (141) T 3ilm_A 55 KSRDIYVYGAG---DEQTSQAVNLLRSAGFEHVSEL 87 (141) T ss_dssp TTSEEEEECSS---HHHHHHHHHHHHHTTCCSEEEC T ss_pred CCCCEEEECCC---CHHHHHHHHHHHHCCCCCEEEE T ss_conf 88867998999---7589999999997497477995 No 91 >2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, alternative splicing; 1.5A {Homo sapiens} Probab=61.86 E-value=5.7 Score=18.13 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=35.7 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 33893289740353333388899999853997899996589805 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488) -.|..|+-|++.-|+|-|...++++||.++ .+|++.+.-||=. T Consensus 52 ~~GD~Il~INg~~v~~~~~~e~~~~l~~~~-~~v~L~v~r~~~~ 94 (97) T 2jil_A 52 KPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEAALLIEYDVSE 94 (97) T ss_dssp CTTCEEEEETTEECSSCCHHHHHHHHHHSC-SEEEEEEEEECCC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC T ss_conf 899999999999978998999999998299-9699999978978 No 92 >2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Probab=61.66 E-value=7.2 Score=17.40 Aligned_cols=42 Identities=17% Similarity=0.387 Sum_probs=36.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+=|++--|++.+...++++||.++ ..|++.+.-|+ T Consensus 48 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~V~R~~ 89 (92) T 2qg1_A 48 LMQGDQILMVNGEDVRNATQEAVAALLKCSL-GTVTLEVGRIS 89 (92) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC T ss_conf 9999999999999978999999999997799-96999999068 No 93 >2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=61.35 E-value=3.8 Score=19.35 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.2 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 33893289740353333388899999853997899996589 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) -.|.+|+-|++--|++-|...++++||+++ .+|.+.+..+ T Consensus 67 ~~GD~Il~VNg~~v~~~~~~e~~~~ik~~~-~~v~L~v~r~ 106 (120) T 2eno_A 67 QEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHR 106 (120) T ss_dssp CTTCEEEEETTEECCSCCHHHHHHHHHHHC-SEEEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 999999999999988997999999997389-8599999978 No 94 >2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Probab=60.91 E-value=6.9 Score=17.53 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=29.9 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 338932897403533333888999998539978999965898 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -.|.+|+-|++--|+|-|...++++||+++- .|.+.+..|+ T Consensus 73 ~~GD~Il~VNg~~v~~~t~~evv~ll~~~~~-~v~L~V~r~~ 113 (117) T 2fne_A 73 KRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVLSSD 113 (117) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEEECS T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-CEEEEEECCC T ss_conf 8899999999999889989999999974999-0899998489 No 95 >1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=60.43 E-value=5.5 Score=18.23 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=34.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC----CCEEEEEECCCC Q ss_conf 5338932897403533333888999998539----978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG----ASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG----a~evh~ri~sPp 396 (488) +-.|.+|+=|++--|+|-|...++++||+++ ...|.+.+..|. T Consensus 51 L~~GD~Il~INg~~v~~~s~~e~~~ll~~a~~~~~~~~v~l~v~~~~ 97 (103) T 1ufx_A 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97 (103) T ss_dssp SCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC T ss_conf 98899999999999889979999999998647787767999997999 No 96 >2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=60.38 E-value=6.9 Score=17.52 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=34.0 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 338932897403533333888999998539978999965898 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -.|.+|+=|++--|++.|...++++||.++ .+|.+.+..+. T Consensus 70 ~~GD~Il~VNg~~v~~~t~~evv~~ir~~~-~~v~l~V~~~~ 110 (117) T 2ehr_A 70 KTGDKILEVSGVDLQNASHSEAVEAIKNAG-NPVVFIVQSLS 110 (117) T ss_dssp CTTCEEEEESSCBCTTCCHHHHHHHHHTSC-SSEEEEECCBS T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 889999999999977998999999998699-84999999899 No 97 >1x45_A Amyloid beta (A4) precursor protein-binding, family A, member 1 (X11); PDZ domain, neuron-specific XII protein, adapter protein XII alpha; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=60.34 E-value=7.6 Score=17.24 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=35.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCC Q ss_conf 5338932897403533333888999998539-978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~sPp 396 (488) +-.|..|+-|++--|++-|...++++|+.+. ...+.+.+...| T Consensus 52 l~~GD~Il~INg~~v~~~t~~~~~~~l~~~~~~~~v~l~i~~~P 95 (98) T 1x45_A 52 LNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVSGP 95 (98) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 99999999999999889989999999973999848999996699 No 98 >2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Helicobacter pylori 26695} Probab=59.38 E-value=7.8 Score=17.13 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.5 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 3389328974035333338889999985399789999 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) -++|.|+++.+| |..+....+.|++.|-+.|++. T Consensus 54 ~k~~~iiv~C~s---G~rS~~a~~~L~~~G~~~v~l~ 87 (110) T 2k0z_A 54 HKDKKVLLHCRA---GRRALDAAKSMHELGYTPYYLE 87 (110) T ss_dssp CSSSCEEEECSS---SHHHHHHHHHHHHTTCCCEEEE T ss_pred CCCCCEEEECCC---CHHHHHHHHHHHHCCCCEEEEC T ss_conf 799868998899---8489999999998599879956 No 99 >2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genomics consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Probab=59.12 E-value=5.6 Score=18.16 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=30.5 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 3389328974035333338889999985399789999658980 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488) -.|.+|+-|++--|+|-|...++++||+++ .+|.+.+.=|.- T Consensus 74 ~~GD~Il~VNg~~v~~~s~~e~v~llr~~~-~~v~L~V~Rp~t 115 (117) T 2byg_A 74 QVGDRLLMVNNYSLEEVTHEEAVAILKNTS-EVVYLKVGKPTT 115 (117) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCC T ss_conf 889999999999988998999999997289-969999957777 No 100 >2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Probab=58.65 E-value=6.7 Score=17.61 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=34.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+=|++--|+|.|...++++||+++ ..|++.+.-| T Consensus 48 L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~-~~v~l~v~R~ 88 (95) T 2vwr_A 48 LSSNDRVLAINGHDLKYGTPELAAQIIQASG-ERVNLTIARP 88 (95) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC T ss_conf 9999999999999946899999999997499-9699999839 No 101 >1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Probab=57.48 E-value=8.4 Score=16.91 Aligned_cols=41 Identities=22% Similarity=0.484 Sum_probs=34.2 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 338932897403533333888999998539978999965898 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -.|.+|+-||+-=|+|.|...++++||+++ .+|.+.+.-+. T Consensus 50 ~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~~v~L~v~r~~ 90 (97) T 1n7e_A 50 HIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQT 90 (97) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEECCC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 989999999999978998999999997599-85999998899 No 102 >1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Probab=57.41 E-value=8.4 Score=16.91 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=34.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|..|+-|++--|++-|...++++||.++ .+|.+++.-+ T Consensus 54 L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~l~v~R~ 94 (100) T 1whd_A 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRV 94 (100) T ss_dssp CCSSCEEEEETTEECTTCCHHHHHHHHHHCS-SEEEEEEEEC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 9999999999999999999999999976799-9799999989 No 103 >2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Probab=57.20 E-value=7.6 Score=17.22 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=33.2 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|..|+=|++--|+|.|...++++||.+| ..|.+.+..| T Consensus 51 L~~GD~Il~INg~~v~~~s~~~v~~lik~~~-~~v~l~V~~~ 91 (98) T 2jxo_A 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91 (98) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEECCH T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC T ss_conf 9999999999999988999999999987799-9799999888 No 104 >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Probab=57.13 E-value=8.2 Score=17.01 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=19.0 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 3893289740353333388899999853997 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488) +..+|++|||+-+ +...+-++|.+.|.+ T Consensus 123 ~~~~VLvVDD~~~---~~~~i~~~L~~~g~~ 150 (259) T 3luf_A 123 QQIEVLVVDDSRT---SRHRTMAQLRKQLLQ 150 (259) T ss_dssp TTCEEEEECSCHH---HHHHHHHHHHTTTCE T ss_pred CCCEEEEECCCHH---HHHHHHHHHHHCCCC T ss_conf 7625787538889---999999999834662 No 105 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=57.13 E-value=8.5 Score=16.88 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=18.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 3389328974035333338889999985399789 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ev 388 (488) +.||+|++|||+-. ..+.+...|.+.|..-. T Consensus 5 l~g~kILiVDD~~~---~r~~l~~~L~~~g~~v~ 35 (130) T 3eod_A 5 LVGKQILIVEDEQV---FRSLLDSWFSSLGATTV 35 (130) T ss_dssp TTTCEEEEECSCHH---HHHHHHHHHHHTTCEEE T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHCCCEEE T ss_conf 89998999969899---99999999998899999 No 106 >2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Probab=56.08 E-value=7.7 Score=17.18 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=31.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 53389328974035333338889999985399789999658 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) +-.|.+|+-||+--|+|.|...++++||.+| ..|.+.+.. T Consensus 51 L~~GD~Il~VNg~~v~~~~~~e~v~~l~~~~-~~v~L~V~~ 90 (128) T 2kjd_A 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVD 90 (128) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTC-SEEEEEEEC T ss_pred CCCCCEEEEECCEEECCCCHHHHHHHHHCCC-CEEEEEEEC T ss_conf 9989999997999967899999999997698-979999986 No 107 >2r4h_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; transferase, structural genomics, structural genomics consortium, SGC; HET: HIS; 2.05A {Homo sapiens} Probab=55.88 E-value=8.9 Score=16.74 Aligned_cols=41 Identities=15% Similarity=0.369 Sum_probs=30.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+-|++--|+|.|...++++||.++ ..|.+.+.-| T Consensus 68 L~~GD~Il~VNg~~v~~~t~~evv~llk~~~-~~v~L~v~R~ 108 (112) T 2r4h_A 68 MRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRG 108 (112) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 9999999989999999997999999987699-8399999969 No 108 >1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Probab=55.82 E-value=8.9 Score=16.73 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=35.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--|+|.|...++++||+++ ..|.+.+.-++ T Consensus 52 l~~GD~Il~INg~~v~~~~~~e~v~~l~~~~-~~v~L~v~R~~ 93 (96) T 1d5g_A 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ 93 (96) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEECCS T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC T ss_conf 9999999999999988998999999987799-86999998389 No 109 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=55.80 E-value=5.5 Score=18.24 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=16.5 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 33893289740353333388899999853997 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488) ++||+|++|||+-.- .+.+.++|++.|.. T Consensus 3 lk~~rILiVDD~~~~---~~~l~~~L~~~g~~ 31 (140) T 3h5i_A 3 LKDKKILIVEDSKFQ---AKTIANILNKYGYT 31 (140) T ss_dssp ---CEEEEECSCHHH---HHHHHHHHHHTTCE T ss_pred CCCCEEEEEECCHHH---HHHHHHHHHHCCCE T ss_conf 899999999598999---99999999987999 No 110 >2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Probab=55.43 E-value=7.1 Score=17.43 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=27.7 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 33893289740353333388899999853997899996589 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) -.|.+|+-|++--|.|-|...++++||+++ .+|.+.+.-+ T Consensus 57 ~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~-~~v~L~V~R~ 96 (101) T 2jik_A 57 QEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHR 96 (101) T ss_dssp CTTCEEEEETTEECSSCCHHHHHHHHHTCC-SEEEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 999999999999988998999999998399-9799999958 No 111 >2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesion; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A Probab=54.99 E-value=8 Score=17.07 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=31.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|..|+-|++--|++.|...++++||+++ ..|++.+.-| T Consensus 56 l~~GD~Il~INg~~v~~~s~~e~~~llr~~~-~~v~L~V~R~ 96 (107) T 2h2b_A 56 LQENDRVAMVNGVSMDNVEHAFAVQQLRKSG-KNAKITIRRK 96 (107) T ss_dssp BCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 9989999999999999998999999998289-9799999973 No 112 >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* Probab=54.68 E-value=6.9 Score=17.51 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=45.2 Q ss_pred HHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEE------EHHHHHHHHHHHHHHHHH Q ss_conf 99999819960010011765321011064467776532013432455338932897------403533333888999998 Q gi|254780336|r 308 IGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLI------DDSIVRGTTSVKIVQMIR 381 (488) Q Consensus 308 ~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlv------DDSIVRGtT~k~iv~~lr 381 (488) ..+|++.|.+....++ |+-+.-.+..+...+...+..+...+++|+|.+. |=+-+|+..+-.+++.|. T Consensus 286 ~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ilGlafK~~t~d~R~S~~~~l~~~L~ 359 (467) T 2q3e_A 286 VYLCEALNLPEVARYW------QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLM 359 (467) T ss_dssp HHHHHHTTCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 9999873998035689------8765247789999999999983266689989999862068888765685899999999 Q ss_pred HCCCCEEEEEECCCCC Q ss_conf 5399789999658980 Q gi|254780336|r 382 SAGASEVHLRVASPMV 397 (488) Q Consensus 382 ~aGa~evh~ri~sPpi 397 (488) +.|+ +| ++--|-+ T Consensus 360 ~~g~-~v--~~~DP~v 372 (467) T 2q3e_A 360 DEGA-HL--HIYDPKV 372 (467) T ss_dssp HTTC-EE--EEECSSS T ss_pred HCCC-EE--EEECCCC T ss_conf 7799-89--9989988 No 113 >2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Probab=54.60 E-value=7.6 Score=17.22 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=33.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+-|++-=|.|-|...++++||+++ ..|++.+.-| T Consensus 63 L~~GD~Il~INg~~v~~~~~~evv~~lr~~~-~~v~l~V~r~ 103 (117) T 2csj_A 63 LQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIVVKRP 103 (117) T ss_dssp BCTTCEEEEESSCBCBTCCHHHHHHHHHHSC-SEEEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CEEEEEEEEC T ss_conf 9999999999999998998999999998089-9699999978 No 114 >1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Probab=54.46 E-value=9.4 Score=16.58 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=31.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--|++-|...++++||.++.-.+.|+..+.| T Consensus 59 L~~GD~Il~VNg~~v~~~~~~ea~~llk~~~~v~l~V~~~~~P 101 (104) T 1wi2_A 59 LQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSGP 101 (104) T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHSSSEEEEEECCCCS T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCEEEEEEEECCCC T ss_conf 9999999999999999997999999986699389999978899 No 115 >3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A Probab=54.23 E-value=9.4 Score=16.56 Aligned_cols=41 Identities=22% Similarity=0.446 Sum_probs=29.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|..|+=|++-=|.|.|...++++|+++| .+|.+.+..+ T Consensus 52 l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~g-~~v~L~v~~~ 92 (99) T 3khf_A 52 LRAGDLITHINGESVLGLVHMDVVELLLKSG-NKISLRTTAL 92 (99) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEECS T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC T ss_conf 3799999999998989999999999987698-9799999939 No 116 >2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Probab=53.80 E-value=9.6 Score=16.51 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=33.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+=||+--|++.|...++++||.+| ..|.+.+-.| T Consensus 56 l~~GD~Il~Ing~~v~~~~~~~~~~~lr~~~-~~v~l~v~~~ 96 (114) T 2edz_A 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDG 96 (114) T ss_dssp CCTTCEEEEESSSBCSSSCHHHHHHHHHHTC-SEEEEEEECH T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 9889999999997742088999999987798-9899999969 No 117 >1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=53.49 E-value=9.7 Score=16.48 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=32.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|+|-|-..++++|++++ .+|.+++- T Consensus 49 L~~GD~Il~INg~~v~~~t~~~~~~~l~~~~-~~v~L~v~ 87 (90) T 1y7n_A 49 VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM 87 (90) T ss_dssp CCSSCEEEEETTEECTTSCHHHHHHHHHHCC-EEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 9999999999999979998999999987599-97999997 No 118 >1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Probab=52.90 E-value=9.9 Score=16.41 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=34.9 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 3389328974035333338889999985399789999658980 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488) -.|.+|+=|++.=|+|-|...++++||.++-..|.+.+.-++. T Consensus 77 ~~GD~Il~INg~~v~~~t~~e~v~~lr~~~~~~v~L~v~r~~~ 119 (130) T 1i16_A 77 QPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119 (130) T ss_dssp CTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 8789999999999889979999999971899759999974898 No 119 >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Probab=52.34 E-value=10 Score=16.35 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=12.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3389328974035333338889999985399 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488) +...+|++|||+-. +.+.+.++|++.|. T Consensus 8 ~~pl~VLiVDD~~~---~r~~l~~~L~~~g~ 35 (140) T 3c97_A 8 IMPLSVLIAEDNDI---CRLVAAKALEKCTN 35 (140) T ss_dssp --CCEEEEECCCHH---HHHHHHHHHTTTCS T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHCCC T ss_conf 99998999939899---99999999998799 No 120 >2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Probab=52.10 E-value=8.7 Score=16.81 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=32.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE--EEECCCCC Q ss_conf 33893289740353333388899999853997899--99658980 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH--LRVASPMV 397 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh--~ri~sPpi 397 (488) -.|.+|+-|++--|+|.|...++++||+++. +|. |+-.+|.- T Consensus 55 ~~GD~Il~VNG~~v~~~~~~e~v~llk~~~~-~v~l~V~~~~~e~ 98 (103) T 2dc2_A 55 HVGDAILAVNGVNLRDTKHKEAVTILSQQRG-EIEFEVVYVALEH 98 (103) T ss_dssp CSSEEEEEETTEESTTSCHHHHHHHHHHCCS-EEEEEEEECC--- T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-CEEEEEEECCCCC T ss_conf 8899999999999789989999999971899-0999999877433 No 121 >1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=51.82 E-value=10 Score=16.30 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=34.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+=|++--|++.|...++++||.++. .|.+.+.-|+ T Consensus 59 l~~GD~Il~INg~~v~~~s~~ev~~~i~~~~~-~v~l~v~r~~ 100 (107) T 1wf8_A 59 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKG-NVRFVIGREK 100 (107) T ss_dssp SCTTCBEEEETTEECBSCCHHHHHHHHHHCCS-EEEEEEEEEC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC T ss_conf 99999999999999889989999999876998-5999999799 No 122 >1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 Probab=51.44 E-value=10 Score=16.26 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=55.6 Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC------------CEEEECCHH--------HHHHHHHHCCCCCHHHHC Q ss_conf 120012047799999981996001001176532------------101106446--------777653201343245533 Q gi|254780336|r 297 VPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG------------RTFIEPSHH--------IRAFGVKLKHSANRTILA 356 (488) Q Consensus 297 ~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g------------RtFI~p~~~--------~R~~~v~~K~~~~~~~i~ 356 (488) +--|.++..+|.-+-+.-|+||... + ++| +-|=.|... .....+.-.+...+..++ T Consensus 259 v~~~~~~~~~A~~Leer~GiP~~~~---~-p~G~~~T~~~Lr~ia~~~g~~~~~~~~e~~I~~e~~~~~~~l~~~~~~L~ 334 (533) T 1mio_A 259 VQCHRSINYIAEMMETKYGIPWIKC---N-FIGVDGIVETLRDMAKCFDDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQ 334 (533) T ss_dssp ESCHHHHHHHHHHHHHHHCCCEEEC---C-CSSHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred EECHHHHHHHHHHHHHHCCEEEEEC---C-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9565789999999998519556506---8-87814589999999998589606778999999999999999999999757 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 893289740353333388899999853997899996 Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) ||++.+.-| |...-.++++|++.|..=|.+.. T Consensus 335 GKrv~i~~~----~~~~~~l~~~l~elGmevv~~g~ 366 (533) T 1mio_A 335 GKTACLYVG----GSRSHTYMNMLKSFGVDSLVAGF 366 (533) T ss_dssp TCEEEEEES----SSHHHHHHHHHHHHTCEEEEEEE T ss_pred CCEEEEECC----CHHHHHHHHHHHHCCCEEEEEEE T ss_conf 974999767----26789999999986996999743 No 123 >3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Probab=51.35 E-value=10 Score=16.25 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=33.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+-||+--|++.|...++++|+++| ..|.+.+-.+ T Consensus 44 L~~GD~I~~Ing~~v~~~~~~~~v~~l~~~~-~~v~l~V~~~ 84 (106) T 3ngh_A 44 LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDG 84 (106) T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHHTT-TEEEEEEECH T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 9889999999999988999999999987699-9799999969 No 124 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=50.63 E-value=6.2 Score=17.88 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=17.7 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEE Q ss_conf 33893289740353333388899999853997-8999 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHL 390 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ 390 (488) ++||||++|||+-.--. .+.++|.+.|.. +|.. T Consensus 3 l~~krILlVdD~~~~~~---~l~~~L~~~g~~~~v~~ 36 (144) T 3kht_A 3 LRSKRVLVVEDNPDDIA---LIRRVLDRKDIHCQLEF 36 (144) T ss_dssp --CEEEEEECCCHHHHH---HHHHHHHHTTCCEEEEE T ss_pred CCCCEEEEEECCHHHHH---HHHHHHHHCCCCEEEEE T ss_conf 88998999958999999---99999996899829999 No 125 >2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=50.19 E-value=11 Score=16.12 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=37.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 533893289740353333388899999853997899996589805 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488) +-.|.+|+-|++--|+|-|...++++||+++ ..|.+.|.-+|.- T Consensus 64 L~~GD~Il~VNg~~v~~~t~~~~~~ll~~~~-~~v~L~V~r~~~~ 107 (118) T 2yub_A 64 IHPGDRILEINGTPVRTLRVEEVEDAIKQTS-QTLQLLIEHDPVP 107 (118) T ss_dssp CCTTCCEEEESSSBTTTSCHHHHHHHHHCCS-SCEEEEEEECSSC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC T ss_conf 9999999998999889998999999997489-9699999979978 No 126 >2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.70A {Homo sapiens} Probab=49.80 E-value=10 Score=16.36 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=24.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-||+--|++-|-..++++||+++ .+|++.+. T Consensus 44 L~~GD~Il~VNg~~v~~~~~~ev~~~l~~~~-~~v~L~v~ 82 (87) T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLD 82 (87) T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 9999999999999999998999999987699-98999999 No 127 >2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Probab=49.48 E-value=11 Score=16.05 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=31.8 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|..|+-|++-=|+|.+...++++||.++ ..|.+.+..|. T Consensus 46 l~~GD~Il~VNg~~v~~~~~~~v~~~lr~~~-~~v~l~V~~~~ 87 (90) T 2he4_A 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKARE-DEARLLVVGPS 87 (90) T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSS-SEEEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC T ss_conf 9999999999999989998999999987699-97999998988 No 128 >2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Probab=49.13 E-value=11 Score=16.01 Aligned_cols=44 Identities=11% Similarity=0.263 Sum_probs=33.8 Q ss_pred HHCCCCEEEEEHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 533893289740353-333388899999853997899996589805 Q gi|254780336|r 354 ILAGKRVVLIDDSIV-RGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488) Q Consensus 354 ~i~gk~vvlvDDSIV-RGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488) +-.|.+|+=|++--| +|.|-...+++||.++. .|.+.+.-+|.. T Consensus 73 L~~GD~Il~VNg~~v~~~~t~~ea~~ll~~~~~-~v~L~v~r~~~~ 117 (128) T 2db5_A 73 LKENDQILAINHTPLDQNISHQQAIALLQQTTG-SLRLIVAREPVH 117 (128) T ss_dssp CCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCS-EEEEEEEECCCS T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHHCCC-EEEEEEEECCCC T ss_conf 999999999999998879999999999980899-599999858988 No 129 >2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Probab=49.07 E-value=6.8 Score=17.59 Aligned_cols=29 Identities=38% Similarity=0.430 Sum_probs=23.3 Q ss_pred CCCCCC---CCCCCHHHHHHHHHHHCCCCEEH Q ss_conf 677201---20012047799999981996001 Q gi|254780336|r 292 IADIVV---PIPDGGVPAAIGYAKESGIPFEQ 320 (488) Q Consensus 292 ~~DiV~---~VPdsg~~aA~gya~~~gip~~~ 320 (488) ++|+|+ .-||+|..+-+|||.++|+|.-- T Consensus 77 ~sD~via~l~~~d~G~~~ElG~A~a~~kPvi~ 108 (165) T 2khz_A 77 QADVVVAEVTQPSLGVGYELGRAVALGKPILC 108 (165) T ss_dssp HCSEEEEECSSCCHHHHHHHHHHHHTCSSEEE T ss_pred HCCEEEEECCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 59999997899986589999999977985999 No 130 >1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Probab=48.93 E-value=11 Score=15.99 Aligned_cols=40 Identities=8% Similarity=0.266 Sum_probs=30.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC------CCEEEEEEC Q ss_conf 5338932897403533333888999998539------978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG------ASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG------a~evh~ri~ 393 (488) +-.|.+|+=|+.--|+|-|...++++||+++ ...|++.|. T Consensus 74 L~~GD~Il~VNg~~v~~~s~~evv~~lr~a~~~~~~~~~~V~L~V~ 119 (127) T 1wg6_A 74 LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVIL 119 (127) T ss_dssp SCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEE T ss_conf 7769999999999988998999999998644345777887999993 No 131 >2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=48.83 E-value=11 Score=15.98 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=34.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|+.=-|+|.|...++++||.++ ..|++.+.-++ T Consensus 70 l~~GD~Il~INg~~v~~~~~~~v~~~lk~~~-~~v~L~v~r~~ 111 (124) T 2daz_A 70 MRIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRNE 111 (124) T ss_dssp CCTTCEECEESSCBCTTSCHHHHHHHHHHSC-SEEEEEEEECT T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 9750689999999988998999999997599-86999999799 No 132 >3bpu_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; zinc, structural genomics consortium, SGC, alternative splicing; 1.60A {Homo sapiens} Probab=48.78 E-value=11 Score=15.97 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=30.1 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEE Q ss_conf 553389328974035333338889999985399-7899996 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRV 392 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri 392 (488) .+-.|.+|+-|++.-|+|-|...++++||++.. .+|.+.+ T Consensus 42 ~l~~GD~Il~INg~~v~~~~~~e~v~~ir~~~~~~~v~l~V 82 (88) T 3bpu_A 42 GLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLV 82 (88) T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEE T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE T ss_conf 99989999999999978998999999997399989999999 No 133 >3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Probab=48.70 E-value=11 Score=15.97 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=26.4 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 38932897403533333888999998539978999 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488) +++.|+++++| |..+...+.+|+++|-+.|.. T Consensus 51 ~~~~Iv~~C~~---g~rs~~aa~~L~~~G~~nv~~ 82 (106) T 3hix_A 51 KSRDIYVYGAG---DEQTSQAVNLLRSAGFEHVSE 82 (106) T ss_dssp TTSCEEEECSS---HHHHHHHHHHHHHTTCSCEEE T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEE T ss_conf 99849999999---829999999999829857899 No 134 >2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis F11} Probab=48.45 E-value=12 Score=15.94 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=29.9 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 5533893289740353333388899999853997899996 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) ..=++|.||+++++ |..+......|+++|-+.|.... T Consensus 76 ~~~~~~~Iiv~C~~---G~rS~~aa~~L~~~Gf~~v~~l~ 112 (148) T 2fsx_A 76 ADQHERPVIFLCRS---GNRSIGAAEVATEAGITPAYNVL 112 (148) T ss_dssp -----CCEEEECSS---SSTHHHHHHHHHHTTCCSEEEET T ss_pred CCCCCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEEEC T ss_conf 48999869998899---87999999999984974579946 No 135 >1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=48.09 E-value=12 Score=15.90 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=32.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 33893289740353333388899999853997899996589805 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488) -.|.+|+-|++--|++-|...++++||+++ .+|.+.+.-++-. T Consensus 58 ~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~-~~v~l~v~R~~~~ 100 (105) T 1wha_A 58 QVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALLLEREAGS 100 (105) T ss_dssp CTTCEEEEESSCBCTTCCHHHHHHHHTSCC-SCEEEEEEECCCC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC T ss_conf 889999999999978998999999997599-8499999989999 No 136 >2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Probab=47.77 E-value=12 Score=15.87 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=28.6 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCC Q ss_conf 33893289740353333388899999853997-899996589 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRVASP 395 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri~sP 395 (488) -.|.+|+=|+.-=|+|.|...++++||+++.. .|.+.+.-| T Consensus 78 ~~GD~Il~VNG~~v~~~t~~ea~~lL~~~~~~~~v~L~V~R~ 119 (121) T 2kom_A 78 KAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119 (121) T ss_dssp CSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEEC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 989999999999978998999999997189989899999779 No 137 >2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Probab=47.77 E-value=12 Score=15.87 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=29.4 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 3893289740353333388899999853997899996 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +++.|++...| |..+....+.|+++|-+.|++.- T Consensus 40 ~~~~iv~yC~~---G~rs~~aa~~L~~~G~~~v~~~g 73 (85) T 2jtq_A 40 KNDTVKVYCNA---GRQSGQAKEILSEMGYTHVENAG 73 (85) T ss_dssp TTSEEEEEESS---SHHHHHHHHHHHHTTCSSEEEEE T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHCCCCEEEECC T ss_conf 88779998899---82799999999986999799765 No 138 >2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Probab=47.43 E-value=12 Score=15.83 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=31.1 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 338932897403533333888999998539978999965898 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -.|..|+-|++--|+|-|...++++||.++. .|.+.+..+. T Consensus 73 ~~GD~Il~VNG~~v~~~t~~evv~llk~~~~-~v~l~V~r~~ 113 (120) T 2iwo_A 73 RVGDRIVTICGTSTEGMTHTQAVNLLKNASG-SIEMQVVAGG 113 (120) T ss_dssp CTTCEEEEETTEECTTCBHHHHHHHHHHCCS-EEEEEEECCT T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC T ss_conf 9999999999999889989999999972899-5999999699 No 139 >2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=47.38 E-value=11 Score=16.00 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=25.1 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 38932897403533333888999998539978999965898 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) .|.+|+-|++--| +.|...++++||.++-. |.+.+..+| T Consensus 50 ~GD~Il~VNg~~v-~~~~~ev~~ll~~~~~~-v~L~v~~~p 88 (91) T 2e7k_A 50 VGDIIKEVNGQPV-GSDPRALQELLRNASGS-VILKILSGP 88 (91) T ss_dssp TTCEEEEETTEEC-TTCHHHHHHHHHTCCSS-BCEEEECCS T ss_pred CCCEEEEECCEEC-CCCHHHHHHHHHCCCCC-EEEEEECCC T ss_conf 6999999999987-89899999998669896-999998289 No 140 >1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Probab=46.69 E-value=12 Score=15.76 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=35.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHC---CCCEEEEEECC-CCCCC Q ss_conf 533893289740353333388899999853---99789999658-98058 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSA---GASEVHLRVAS-PMVLY 399 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~a---Ga~evh~ri~s-Ppi~~ 399 (488) +-.|.+|+-|++--|+|-|....+++||++ +...|++.++- ||-.+ T Consensus 62 L~~GD~Il~VNg~~v~~~t~~ea~~~l~~a~~~~~~~v~l~v~r~pp~~~ 111 (118) T 1v6b_A 62 VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEY 111 (118) T ss_dssp SCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC T ss_conf 98799999999999889979999999986434799989999983898877 No 141 >1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=46.56 E-value=12 Score=15.74 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=33.8 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|..|+=|++--|++.|...++++||.+ ...|++.+... T Consensus 58 L~~GD~Il~INg~~v~~~~~~ev~~llk~~-~~~v~l~v~~~ 98 (113) T 1um7_A 58 LRRGDRILSVNGVNLRNATHEQAAAALKRA-GQSVTIVAQYR 98 (113) T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHHSC-CSEEEEEEECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEEC T ss_conf 999999999999998899899999999808-99599999989 No 142 >3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Probab=46.39 E-value=10 Score=16.36 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=33.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 53389328974035333338889999985399789999658980 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488) +-.|.+|+-|++--|+|-|...++++||++ ...|++.+...|- T Consensus 54 l~~GD~Il~VNg~~v~~~~~~ev~~ll~~~-~~~v~L~v~~~p~ 96 (104) T 3i4w_A 54 LRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKPE 96 (104) T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEECHH T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 999999999899465899899999999839-9919999998984 No 143 >1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Probab=45.96 E-value=13 Score=15.68 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=30.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|++-|...++.+|+++| ..|.+.+. T Consensus 50 L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~l~V~ 88 (91) T 1m5z_A 50 LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG-NKLDLVIS 88 (91) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 6399999999999989999999999987699-98999999 No 144 >3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consortium, SGC, cytoplasm, polymorphism, protein binding; 2.60A {Homo sapiens} Probab=45.92 E-value=13 Score=15.68 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=34.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCC Q ss_conf 5338932897403533333888999998539-978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~sPp 396 (488) +-.|..|+-|++-=|+|.|...++++||++. ..++.+++..|. T Consensus 47 l~~GD~Il~VNg~~v~~~t~~ev~~~Lk~~~~~~~~~l~l~~p~ 90 (95) T 3gge_A 47 ICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90 (95) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 99999999999999889979999999976999978999993788 No 145 >1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Probab=45.75 E-value=13 Score=15.66 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=25.5 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 33893289740353333388899999853997899996 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) ..+++|||+||+ |.........|+..|- ++++.- T Consensus 320 ~~~~~iVl~d~~---~~ra~~~a~~L~~~G~-dv~vl~ 353 (539) T 1yt8_A 320 VRGARLVLVDDD---GVRANMSASWLAQMGW-QVAVLD 353 (539) T ss_dssp SBTCEEEEECSS---SSHHHHHHHHHHHTTC-EEEEEC T ss_pred CCCCEEEEEECC---CCHHHHHHHHHHHCCC-EEEEEC T ss_conf 899759999488---6349999999997797-767614 No 146 >1u39_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=45.03 E-value=13 Score=15.58 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=31.7 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 533893289740353333388899999853997899996 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +-.|.+|+=|++-=|+|-|...++++|+.++ .+|.+.+ T Consensus 40 L~~GD~Il~VNg~~v~~~s~~~~~~ll~~~~-~~v~l~v 77 (80) T 1u39_A 40 VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKT 77 (80) T ss_dssp CCTTEEECEETTEEGGGSCHHHHHHHHHTCC-EEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE T ss_conf 9999999999999979997999999986698-9899999 No 147 >2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Probab=44.92 E-value=13 Score=15.57 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=27.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|.+-|...++++||.+| .+|.+.+. T Consensus 45 L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~-~~v~L~V~ 83 (89) T 2q3g_A 45 VAVGDWVLSIDGENAGSLTHIEAQNKIRACG-ERLSLGLS 83 (89) T ss_dssp CCTTCEEEEETTEEGGGCCHHHHHHHHHTCT-TEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 9999999999999999998999999987699-98999999 No 148 >1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Probab=44.76 E-value=13 Score=15.56 Aligned_cols=42 Identities=36% Similarity=0.469 Sum_probs=30.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|..|+-|+.-=|+|-|...++++|+.++. .|++.+..|. T Consensus 45 l~~GD~Il~INg~~v~~~~~~ev~~li~~~~~-~v~L~V~~~~ 86 (91) T 1g9o_A 45 LLAGDRLVEVNGENVEKETHQQVVSRIRAALN-AVRLLVVDPE 86 (91) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS-EEEEEEECCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC T ss_conf 99899999999999999989999999975999-7999998999 No 149 >1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=44.67 E-value=13 Score=15.55 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=33.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+=|++--|++-|...++++||+++ .+|.+.+.-+ T Consensus 61 L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~-~~v~l~v~~~ 101 (117) T 1v62_A 61 LHPGDHILSIDGTSMEHCSLLEATKLLASIS-EKVRLEILPV 101 (117) T ss_dssp CCTTCBEEEETTEETTSCCHHHHHHHHHSCS-SEEEEEECCB T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEEEC T ss_conf 9728899999999988998999999998399-9489999969 No 150 >3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Probab=43.80 E-value=13 Score=15.46 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=34.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC--EEEEEECCCCC Q ss_conf 533893289740353333388899999853997--89999658980 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS--EVHLRVASPMV 397 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~--evh~ri~sPpi 397 (488) +-.|.+|+-|++--|+|-|....+++||++..+ .|.+.++-+.= T Consensus 52 L~~GD~Il~VNg~~l~~~s~~ea~~~lr~~~~~~~~v~l~v~r~~~ 97 (108) T 3cbz_A 52 IEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97 (108) T ss_dssp CCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCC T ss_conf 9699999999999988998999999998555689719999970799 No 151 >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Probab=43.73 E-value=11 Score=16.07 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=16.5 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 3893289740353333388899999853997 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488) +.|||++|||+-.-. +.+.++|...|-. T Consensus 5 ~~krILiVDDd~~~~---~~l~~~L~~~g~~ 32 (132) T 3lte_A 5 QSKRILVVDDDQAMA---AAIERVLKRDHWQ 32 (132) T ss_dssp --CEEEEECSCHHHH---HHHHHHHHHTTCE T ss_pred CCCEEEEEECCHHHH---HHHHHHHHHCCCE T ss_conf 898699997999999---9999999988999 No 152 >2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Probab=43.54 E-value=14 Score=15.43 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=34.6 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 38932897403533333888999998539978999965898 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) .|..|+-|++--|+|-|...++++|+.+.- .|++.+.-|. T Consensus 52 ~GD~Il~INg~~v~~~~~~~v~~ll~~~~~-~v~L~v~R~~ 91 (96) T 2qkv_A 52 RGDIITKFNGDALEGLPFQVSYALFKGANG-KVSMEVTRPK 91 (96) T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHHTCSS-EEEEEEECCC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC T ss_conf 899999999999779989999999977998-5999998389 No 153 >1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=43.22 E-value=14 Score=15.40 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=35.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 5338932897403533333888999998539978999965898058 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLY 399 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~ 399 (488) +-.|.+|+-|++--|++-|...++++|+.++ ..|.+.+...|-.+ T Consensus 60 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~~~ 104 (117) T 1uit_A 60 LEYGDQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQYNPHVH 104 (117) T ss_dssp CCTTCEECEETTEETTTCCHHHHHHHTTSCC-SEEEEEECCCSCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCEE T ss_conf 9999999999999988999999999987799-84999999999414 No 154 >2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Probab=42.90 E-value=14 Score=15.36 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=32.4 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 3389328974035333338889999985399789999658 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) -.|.+|+=|++-=|+|-+...++++||.++.. |.+.+.- T Consensus 55 ~~GD~Il~VNg~~v~~~~~~~vv~~l~~~~~~-v~L~v~r 93 (113) T 2g5m_B 55 QVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR-VRFMIGR 93 (113) T ss_dssp CTTCBEEEETTEECSSCCHHHHHHHHHHSCSS-CEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEE T ss_conf 98999999999997899799999998769985-9999996 No 155 >1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B* Probab=42.35 E-value=14 Score=15.30 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=53.8 Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEE--------EC-CH---HHHHHHHHHCCCCCHHHHCCCCEEEE Q ss_conf 012047799999981996001001176532----1011--------06-44---67776532013432455338932897 Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFI--------EP-SH---HIRAFGVKLKHSANRTILAGKRVVLI 363 (488) Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI--------~p-~~---~~R~~~v~~K~~~~~~~i~gk~vvlv 363 (488) |.++..+|.-+.+..|+||... +..+| ..|+ .+ .+ .+|.+.+.. +.--+..+.||++.+. T Consensus 291 ~~~~~~~a~~Le~~~G~p~~~~---~~P~Gi~~Td~fL~~l~~~~G~~~~~~i~~er~rl~da-~~d~~~~l~GKrvaI~ 366 (519) T 1qgu_B 291 PWQLLKSKKVVQEMWNQPATEV---AIPLGLAATDELLMTVSQLSGKPIADALTLERGRLVDM-MLDSHTWLHGKKFGLY 366 (519) T ss_dssp TTTCHHHHHHHHHTSCCCCCCC---CCCBSHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEC---CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHCCCCEEEEE T ss_conf 5679999999999859982614---78788799999999999986899448999999999999-9999997189679998 Q ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 403533333888999998539978999965898 Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -|. ...-.+.+.|+|.|+.=+|+.+..++ T Consensus 367 gdp----~~~~~la~fL~ElG~ep~~v~~~~~~ 395 (519) T 1qgu_B 367 GDP----DFVMGLTRFLLELGCEPTVILSHNAN 395 (519) T ss_dssp SCH----HHHHHHHHHHHHTTCEEEEEEETTCC T ss_pred CCC----HHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 883----45899999999879945698617998 No 156 >2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Probab=42.28 E-value=14 Score=15.30 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=33.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCC Q ss_conf 53389328974035333338889999985399-78999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~sPp 396 (488) +-.|..|+=|++--|+|.|...++++||+++. ..|.+.+.=|+ T Consensus 58 l~~GD~Il~INg~~v~~~t~~e~~~ll~~~~~~~~v~l~v~r~~ 101 (111) T 2koj_A 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101 (111) T ss_dssp SCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 99999999999999889999999999981899998999998289 No 157 >3b76_A E3 ubiquitin-protein ligase LNX; PDZ, peptide, bound ligand, domain, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.75A {Homo sapiens} Probab=42.19 E-value=13 Score=15.46 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=24.7 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 338932897403533333888999998539978999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) -.|.+|+-|++--|+|-|...++++||+++ ..|.+.+. T Consensus 73 ~~GD~Il~VNg~~v~~~s~~eav~ll~~~~-~~v~L~V~ 110 (118) T 3b76_A 73 KTGDILLNVDGVELTEVSRSEAVALLKRTS-SSIVLKAL 110 (118) T ss_dssp CTTCEEEEETTEEGGGSCHHHHHHHHHSCC-SEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 889999999999988998999999997299-90999999 No 158 >2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Probab=41.86 E-value=14 Score=15.25 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=26.0 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 338932897403533333888999998539978999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) -.|.+|+=|++-=|+|.|...++++||.++ ..|.+.+. T Consensus 64 ~~GD~Il~VNg~~v~~~~~~~a~~~lk~~~-~~v~L~v~ 101 (108) T 2jre_A 64 EPNDKILRVDDVNVQGMAQSDVVEVLRNAG-NPVRLLLI 101 (108) T ss_dssp CSSEEEEEETTEECTTSCHHHHHHHHHHHC-SEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 999999999999988998999999997599-84899999 No 159 >2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=41.72 E-value=12 Score=15.86 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=31.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+=||..=|++-|...++++|+++|. +|++.+- T Consensus 79 L~~GD~Il~Ing~~v~~~~~~e~v~~i~~~g~-~v~L~V~ 117 (126) T 2yuy_A 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSDT-TLELSVM 117 (126) T ss_dssp CCSSCCCCEETTEECSSCCHHHHHHHHHTCTT-EEEEECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE T ss_conf 98899999999999889999999999877999-7999999 No 160 >2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Probab=41.69 E-value=14 Score=15.24 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=29.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 533893289740353333388899999853997899996 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +-.|.+|+-|+.--|.+-|...++.+|+++| .+|.+.+ T Consensus 55 L~~GD~I~~Ing~~v~~~~~~~~~~~i~~~~-~~v~L~v 92 (96) T 2ego_A 55 LTPGDTIASVNGLNVEGIRHREIVDIIKASG-NVLRLET 92 (96) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE T ss_conf 9889999999999988999999999987699-9899999 No 161 >1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Probab=41.49 E-value=15 Score=15.21 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=31.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|..|+-|++--|+|-|...++++||++|.. |.+.+. T Consensus 122 l~~GD~il~vng~~~~~~~~~~~~~~l~~~~~~-v~l~v~ 160 (263) T 1z87_A 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKE-VVLEVK 160 (263) T ss_dssp CCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSC-CCEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCE-EEEEEE T ss_conf 999999999899678899599999999858997-889999 No 162 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} Probab=41.29 E-value=15 Score=15.19 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=60.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCC------CCCHHHHHHHH Q ss_conf 338932897403533333888999998539978999965898058865650058978885466------99988999870 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANK------CSSPQEMCNFI 428 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~------~~~~eei~~~i 428 (488) ++||+|.+| =-|..-+.+.++|+..|.+ |+.-..+++-..........++.+||++.- ....+|-+..| T Consensus 138 l~gktvgIi----G~G~IG~~va~~l~~fg~~-v~~~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~Plt~~T~~li 212 (324) T 3hg7_A 138 LKGRTLLIL----GTGSIGQHIAHTGKHFGMK-VLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLF 212 (324) T ss_dssp STTCEEEEE----CCSHHHHHHHHHHHHTTCE-EEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSB T ss_pred CCCCEEEEE----EEEECCCHHHHCCCCCCCE-EECCCCCCCCCHHHHCCCCCCCHHCCCCCCCCCEEECCCCCCCHHHH T ss_conf 658888999----6650550231024676755-64032343321011013210001004445664312058984202120 Q ss_pred CCCEE---------------EEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHH Q ss_conf 99778---------------88339899986114666667567320121378766876455 Q gi|254780336|r 429 GVDSL---------------GFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQ 474 (488) Q Consensus 429 gadsl---------------~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~ 474 (488) +++.| .-...++|.+|+.. ..+.-++.+--++.|.+.+. T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-------g~l~ga~lDV~~~EP~~~~~ 266 (324) T 3hg7_A 213 TASRFEHCKPGAILFNVGRGNAINEGDLLTALRT-------GKLGMAVLDVFEQEPLPADS 266 (324) T ss_dssp CTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHT-------TSSSEEEESCCSSSSCCTTC T ss_pred CHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC-------CCCEEEEEECCCCCCCCCCC T ss_conf 5899975579848998416440576999999974-------99527998069999999997 No 163 >1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Probab=41.03 E-value=15 Score=15.17 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=36.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 533893289740353333388899999853997899996589805 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488) +-.|.+|+=||+--|+|.|....+++||.++ ..|.+.+.-++-. T Consensus 47 L~~GD~Il~INg~~v~~~t~~eav~~l~~~~-~~v~L~V~R~~~~ 90 (103) T 1wf7_A 47 VRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQRASAA 90 (103) T ss_dssp CCTTCBEEEETTEECSSCCHHHHHHHHHHCS-SEEEEEECCCSCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC T ss_conf 9999999999999889998999999998499-9699999989977 No 164 >1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=41.01 E-value=11 Score=15.98 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=32.3 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 3389328974035333338889999985399789999658 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) -.|.+|+-|++--|++.|...++++||.++ ..|.+.+.- T Consensus 64 ~~GD~Il~VNg~~v~~~t~~e~v~~l~~~~-~~v~L~V~r 102 (111) T 1uju_A 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCD 102 (111) T ss_dssp CTTCBCCBBSSCBCTTSCHHHHHHHHSSCS-SEEEECCCC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE T ss_conf 989899999999988998999999997289-949999998 No 165 >2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} Probab=40.82 E-value=15 Score=15.14 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=56.7 Q ss_pred CCCCCCCCHHHH-HHHHHHHCCCCEEH-HEECCCCCCCEEEECCH---HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHH Q ss_conf 201200120477-99999981996001-00117653210110644---67776532013432455338932897403533 Q gi|254780336|r 295 IVVPIPDGGVPA-AIGYAKESGIPFEQ-GIIRNHYVGRTFIEPSH---HIRAFGVKLKHSANRTILAGKRVVLIDDSIVR 369 (488) Q Consensus 295 iV~~VPdsg~~a-A~gya~~~gip~~~-~lvkn~y~gRtFI~p~~---~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVR 369 (488) +++|.|=||-.. |...++.+|.++-. ..+++......-..+.+ .......+.-...+...+.....+++|....+ T Consensus 9 ~i~G~~GsGKTTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 88 (193) T 2rhm_A 9 IVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRV 88 (193) T ss_dssp EEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCH T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH T ss_conf 99868999979999999999699387056620044442023438898864001435799999998833897387244310 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 333888999998539978999965898 Q gi|254780336|r 370 GTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 370 GtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -.....+..+++..+..=+++...+|| T Consensus 89 ~~~~~~~~~~~~~~~~~~~~I~l~~~~ 115 (193) T 2rhm_A 89 DLDTERMQNLHTIAPFTPIQIRCVASG 115 (193) T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEECCH T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCH T ss_conf 778999999998379985289996999 No 166 >1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Probab=40.77 E-value=15 Score=15.14 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=27.5 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 338932897403533333888999998539978999 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488) -+++.||+++.+ |..+....+.|++.|-+.|+. T Consensus 80 ~~~~~ivv~C~~---G~rS~~aa~~L~~~G~~nV~~ 112 (137) T 1qxn_A 80 DPEKPVVVFCKT---AARAALAGKTLREYGFKTIYN 112 (137) T ss_dssp CTTSCEEEECCS---SSCHHHHHHHHHHHTCSCEEE T ss_pred CCCCCEEEECCC---CCCHHHHHHHHHHCCCCCEEE T ss_conf 977637987389---983999999999849966798 No 167 >2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=40.53 E-value=15 Score=15.11 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=31.8 Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 55338932897403533333888999998539978999965 Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) .+-.|.+|+-|++--|++-|...++++||.++- .+.+.+. T Consensus 47 ~L~~GD~Il~INg~~v~~~s~~e~~~llk~~~~-~v~L~V~ 86 (96) T 2edv_A 47 KLFPGDQILQMNNEPAEDLSWERAVDILREAED-SLSITVV 86 (96) T ss_dssp TSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSS-CEEEEEE T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE T ss_conf 789999999999999889989999999975998-5999999 No 168 >2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A Probab=40.46 E-value=15 Score=15.11 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=12.2 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 372899999999999987 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAK 287 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~ 287 (488) .-.++..+|.++-+...+ T Consensus 403 ~~~~l~~F~~~l~~~~~~ 420 (666) T 2zxr_A 403 DEALFPAFKARVEAYAAR 420 (666) T ss_dssp CGGGHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 652159999999999985 No 169 >1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidoreductase; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Probab=40.44 E-value=15 Score=15.10 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=24.8 Q ss_pred CCEEEE---EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--------CEECCCHHHHH Q ss_conf 932897---4035333338889999985399789999658980588656--------50058978885 Q gi|254780336|r 358 KRVVLI---DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFY--------GIDIPDPTALL 414 (488) Q Consensus 358 k~vvlv---DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~y--------Gid~p~~~eLi 414 (488) |.|+++ .+.+=+-..-++=++.|++.|. +| -||+...|+. |-.|++.++.+ T Consensus 116 ~PviiaPaMn~~M~~~p~~~~ni~~L~~~G~---~v---i~P~~~~~g~la~g~~~~gr~~~~p~~i~ 177 (194) T 1p3y_1 116 HNTIFFPNMNDLMWNKTVVSRNIEQLRKDGH---IV---IEPVEIMAFEIATGTRKPNRGLITPDKAL 177 (194) T ss_dssp SCCEEEECCCHHHHTCHHHHHHHHHHHHHTC---EE---CCCBCCC------------CBCCCHHHHH T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCC---EE---ECCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 9806886838999953789999999996799---99---68767886313137836998879999999 No 170 >1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=40.35 E-value=12 Score=15.76 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=33.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCC Q ss_conf 53389328974035333338889999985399-789999658980588 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVASPMVLYP 400 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~sPpi~~p 400 (488) +-.|.+|+-|++--|++.|...++++||.++. -.|.+.+.-++..-| T Consensus 53 L~~GD~Il~VNg~~v~~~~~~e~~~llr~~~~~~~v~l~v~r~~~~~P 100 (103) T 1uep_A 53 LHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGP 100 (103) T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC T ss_conf 988999999999996899799999999739999989999975899978 No 171 >2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Probab=40.23 E-value=14 Score=15.33 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=6.3 Q ss_pred CCCCCEEEEEEE Q ss_conf 158870279999 Q gi|254780336|r 39 HRGQEATGIISF 50 (488) Q Consensus 39 HRGqdsaGIa~~ 50 (488) +|+.++.|+.+. T Consensus 16 ~k~~~glGf~l~ 27 (216) T 2krg_A 16 KKGPSGYGFNLH 27 (216) T ss_dssp ECCSSSSCEEEC T ss_pred EECCCCCCEEEE T ss_conf 879982356997 No 172 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Probab=40.22 E-value=15 Score=15.08 Aligned_cols=30 Identities=3% Similarity=-0.012 Sum_probs=17.0 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHH Q ss_conf 88899999853997899996589805886565005897888 Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTAL 413 (488) Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eL 413 (488) .+++.+++++.|. |.+. --+|++-.+.++| T Consensus 296 ~~~~~~l~~~lgl----------P~~L-~~~gi~~~~~~~l 325 (370) T 1jq5_A 296 IERYIELYLCLDL----------PVTL-EDIKLKDASREDI 325 (370) T ss_dssp HHHHHHHHHHTTC----------CCST-TTTTCTTCCHHHH T ss_pred HHHHHHHHHHCCC----------CCCH-HHCCCCCCCHHHH T ss_conf 9999999998799----------9998-9959897769999 No 173 >3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis} Probab=39.89 E-value=15 Score=15.11 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=17.5 Q ss_pred HHHHHHHHHHHCCCCEEEEEEC----CCCCCCCCCCC Q ss_conf 3888999998539978999965----89805886565 Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVA----SPMVLYPDFYG 404 (488) Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~----sPpi~~pc~yG 404 (488) -++.|++.+++.|+++|..--+ -|..+.+..++ T Consensus 100 ~a~~i~~~~~~~gv~~ii~lgg~~~~~~~t~~~~v~~ 136 (250) T 3mnf_A 100 FCNELLAFAHELGVELVVVLGALLGDTPHTRPVPVSG 136 (250) T ss_dssp HHHHHHHHHHHHTCCEEEEEEEEEESCCTTSCCCEEE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE T ss_conf 9999999999759968999455147888877730899 No 174 >1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Probab=39.60 E-value=15 Score=15.16 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=28.1 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 338932897403533333888999998539978999965898 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -.|.+|+-|++=-|+|.|...++++||.++ ..|.+.+...| T Consensus 58 ~~GD~Il~INg~~v~~~s~~e~~~ll~~~~-~~v~L~v~~~~ 98 (119) T 1tp5_A 58 RKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP 98 (119) T ss_dssp CTTEEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEEECH T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 999999999998988998999999998599-96999999898 No 175 >1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Probab=39.08 E-value=16 Score=14.96 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=28.9 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 33893289740353333388899999853997899996 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) -++++||+++.| |..+....+.|+++|-+.|.+.- T Consensus 80 ~~~~~vi~~C~~---G~rs~~aa~~L~~~G~~~v~~l~ 114 (129) T 1tq1_A 80 GQSDNIIVGCQS---GGRSIKATTDLLHAGFTGVKDIV 114 (129) T ss_dssp CTTSSEEEEESS---CSHHHHHHHHHHHHHCCSEEEEE T ss_pred CCCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEEEC T ss_conf 999849998899---84999999999981896879932 No 176 >1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=38.80 E-value=16 Score=14.93 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=34.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 53389328974035333338889999985399789999658980 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488) +-.|.+|+=|+.--|+|-|...++++||.++ .+|.+.+.-|+= T Consensus 55 l~~GD~Il~INg~~v~~~s~~~v~~~l~~~~-~~v~l~v~R~~~ 97 (103) T 1wfv_A 55 MRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGTG 97 (103) T ss_dssp SCTTCEEEEETTEECSSCCHHHHHHHHHHHC-SEECEEEECTTC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC T ss_conf 8999999999999998997999999997389-969999998999 No 177 >2vph_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, ptpmeg, hydrolase, cytoplasm, cytoskeleton, megakaryocyte, dephosphorylation; 1.90A {Homo sapiens} Probab=38.50 E-value=16 Score=14.90 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=32.2 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC---EEEEEEC Q ss_conf 533893289740353333388899999853997---8999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS---EVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~---evh~ri~ 393 (488) +-.|..|+-|++-=|+|.|...++++||+++.+ +|.+.+- T Consensus 50 L~~GD~Il~INg~~v~~~~~~~~~~~lr~~~~~~~~~v~l~v~ 92 (100) T 2vph_A 50 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 92 (100) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHCGGGCBTTBEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 9999999999999989998999999998668889739999992 No 178 >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Probab=38.26 E-value=16 Score=14.88 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=21.6 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 3389328974035333338889999985399789999 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) +++.||++|||+-. ..+.+.++|.+.|-..|..+ T Consensus 3 l~~lrILiVDD~~~---~~~~l~~~L~~~g~~~v~~a 36 (129) T 3h1g_A 3 LGSMKLLVVDDSST---MRRIIKNTLSRLGYEDVLEA 36 (129) T ss_dssp ---CCEEEECSCHH---HHHHHHHHHHHTTCCCEEEE T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHCCCEEEEEE T ss_conf 87889999928899---99999999998699699998 No 179 >1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Probab=38.20 E-value=16 Score=14.87 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=30.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+=|++--|+|-|....+++||++| .+|.+.+. T Consensus 60 L~~GD~Il~VNg~~v~~~~~~eav~~l~~~~-~~v~L~V~ 98 (103) T 1n7t_A 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIV 98 (103) T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHCC-SEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 6899999999999988997999999997289-97999999 No 180 >3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Probab=37.98 E-value=16 Score=14.85 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=33.7 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 3389328974035333338889999985399789999658980 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488) -.|..|+-|++-=|+|-|...++++||.+. ..|.+++. |+. T Consensus 48 ~~GD~Il~INg~~v~~~t~~e~~~~lk~~~-~~v~L~i~-p~~ 88 (93) T 3o46_A 48 HVGDELREVNGIPVEDKRPEEIIQILAQSQ-GAITFKII-PGS 88 (93) T ss_dssp CTTCEEEEETTEESTTSCHHHHHHHHHHCC-EEEEEEEE-CC- T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEE-ECC T ss_conf 679999999999988998999999997699-91999996-088 No 181 >1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=37.89 E-value=16 Score=14.84 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=31.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|++-|...++++||+++ .+|.+.|. T Consensus 64 L~~GD~Il~VNg~~v~~~~~~~vv~~lk~~~-~~v~L~V~ 102 (110) T 1x5q_A 64 VRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVW 102 (110) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 9999999999999989998999999987799-97999999 No 182 >2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consortium, SGC, unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Probab=37.56 E-value=17 Score=14.80 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=25.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 3389328974035333338889999985399789999658 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) -.|.+|+-|++--|.|.|...++++||.+| ..|++.+.- T Consensus 46 ~~GD~Il~INg~~v~~~~~~e~~~~l~~~~-~~v~L~V~R 84 (91) T 2pkt_A 46 CIGDVITAIDGENTSNMTHLEAQNRIKGCT-DNLTLTVAR 84 (91) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE T ss_conf 999999989999999998999999987799-829999998 No 183 >2q9v_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; Cys Ser mutant, structural genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Probab=37.15 E-value=12 Score=15.79 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=25.1 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEEC Q ss_conf 33893289740353333388899999853997-8999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri~ 393 (488) -.|..|+=|++.-|+|-|...++++|++++.. .|.+.+. T Consensus 47 ~~GD~Il~VNg~~v~~~t~~ev~~~l~~~~~~~~v~L~V~ 86 (90) T 2q9v_A 47 RSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVR 86 (90) T ss_dssp CTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEE T ss_conf 8999999999999899989999999985899988999999 No 184 >1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein/oxidoreductase complex; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Probab=36.87 E-value=17 Score=14.73 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=25.0 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 533893289740353333388899999853997899996 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +-.|.+|+=|++--|++-|...++++||+++. +|.+.+ T Consensus 49 L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~-~v~L~v 86 (90) T 1qav_A 49 LFVGDAILSVNGEDLSSATHDEAVQALKKTGK-EVVLEV 86 (90) T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTCCS-EEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEE T ss_conf 99899999999999999989999999980899-599999 No 185 >3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural genomics, protein structure initiative; 2.10A {Bacillus halodurans} Probab=36.51 E-value=17 Score=14.69 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=7.8 Q ss_pred CCCCCCCCCCHHHHH Q ss_conf 772012001204779 Q gi|254780336|r 293 ADIVVPIPDGGVPAA 307 (488) Q Consensus 293 ~DiV~~VPdsg~~aA 307 (488) +|.++=+|=|+..-| T Consensus 87 aD~mvIaPaSanTlA 101 (201) T 3lqk_A 87 LDCMVIAPMTGNSTS 101 (201) T ss_dssp CSEEEEEEECHHHHH T ss_pred CCEEEEEECCHHHHH T ss_conf 389999108887999 No 186 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=36.05 E-value=18 Score=14.64 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=14.9 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCC Q ss_conf 89328974035333338889999985399 Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488) ||||++|||+-.= .+.+..+|.+.|- T Consensus 2 ~~rILiVDD~~~~---r~~l~~~L~~~g~ 27 (120) T 1tmy_A 2 GKRVLIVDDAAFM---RMMLKDIITKAGY 27 (120) T ss_dssp CCEEEEECSCHHH---HHHHHHHHHHTTC T ss_pred CCCEEEEECCHHH---HHHHHHHHHHCCC T ss_conf 9869999199999---9999999998799 No 187 >3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Probab=35.95 E-value=18 Score=14.63 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=5.9 Q ss_pred CCCCCCCCCCHHHH Q ss_conf 77201200120477 Q gi|254780336|r 293 ADIVVPIPDGGVPA 306 (488) Q Consensus 293 ~DiV~~VPdsg~~a 306 (488) +|.++=+|=|+..- T Consensus 85 aD~mvIaPaTaNTl 98 (207) T 3mcu_A 85 LDCMVIAPLTGNSM 98 (207) T ss_dssp CSEEEEEEECHHHH T ss_pred CCEEEECCCCHHHH T ss_conf 18999834767799 No 188 >1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=35.53 E-value=18 Score=14.58 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.0 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 3389328974035333338889999985399789999658 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) -.|.+|+-|++--|++.|...++++||+++ .+|++.+.- T Consensus 69 ~~GD~Il~VNg~~v~~~t~~ev~~~i~~~~-~~v~L~v~r 107 (117) T 1ujd_A 69 MEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRL 107 (117) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHSCCS-SCEEEEEES T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE T ss_conf 999999999999978997999999998399-959999997 No 189 >2v90_A PDZ domain-containing protein 3; alternative splicing, membrane, cytoplasm, protein-binding; 2.00A {Homo sapiens} Probab=35.17 E-value=18 Score=14.55 Aligned_cols=40 Identities=35% Similarity=0.471 Sum_probs=23.7 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 33893289740353333388899999853997899996589 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) -.|.+|+=||+--|.+-|...++.+||.+| ..|.+.+..| T Consensus 49 ~~GD~Il~Ing~~v~~~s~~~v~~~l~~~~-~~v~L~v~r~ 88 (96) T 2v90_A 49 QAGDRLVAVAGESVEGLGHEETVSRIQGQG-SCVSLTVVDP 88 (96) T ss_dssp CTTEEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEECC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC T ss_conf 989999999999989999999999987798-9799999879 No 190 >2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylation, SH3 domain, protein bindin; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Probab=35.15 E-value=18 Score=14.54 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=30.4 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 389328974035333338889999985399789999658 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) .|..|+=|++.-|++.|...++++|++++. ++++.+.- T Consensus 42 ~GD~Il~vNg~~v~~~~~~~~~~~i~~~~~-~v~l~v~R 79 (81) T 2rcz_A 42 EGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQR 79 (81) T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEE T ss_conf 999999999999888989999999877989-79999996 No 191 >2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=35.05 E-value=14 Score=15.26 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=26.4 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 33893289740353333388899999853997899996589 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) -.|.+|+-|++--|++ |....+++||.++ ..|.+.+..| T Consensus 55 ~~GD~Il~VNg~~v~~-~~~e~v~lik~~~-~~v~L~V~R~ 93 (100) T 2edp_A 55 RTGDELVNINGTPLYG-SRQEALILIKGSF-RILKLIVRRR 93 (100) T ss_dssp CTTCEEEEETTEECCS-CSHHHHHHHHTCC-SSCEEEEEEC T ss_pred CCCCEEEEECCEECCC-CHHHHHHHHHHCC-CEEEEEEECC T ss_conf 8899999999998427-8999999998089-9299999709 No 192 >2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Probab=34.97 E-value=18 Score=14.52 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=19.4 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 89328974035333338889999985399789999 Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) +|||++|||+-. ..+.+..+|.+.|- +|+.. T Consensus 2 ~~rILiVDDd~~---~~~~l~~~L~~~G~-~v~~a 32 (127) T 2jba_A 2 ARRILVVEDEAP---IREMVCFVLEQNGF-QPVEA 32 (127) T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTTC-EEEEE T ss_pred CCCEEEEECCHH---HHHHHHHHHHHCCC-EEEEE T ss_conf 988999979999---99999999998799-99998 No 193 >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 Probab=34.91 E-value=18 Score=14.52 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=21.2 Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 2455338932897403533333888999998539978999965898 Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +...+..++-+++|++--.......+++.|+..|-.-.-+.+++|+ T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 148 (287) T 1gvn_B 103 ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPK 148 (287) T ss_dssp HHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCH T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 9999854888555443453789999999999679979999867981 No 194 >2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Probab=34.26 E-value=19 Score=14.45 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=29.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 533893289740353333388899999853997899996 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +-.|.+|+-|++--|++.|...++++||.+| ..|.+.+ T Consensus 66 l~~GD~Il~VNg~~v~~~~~~~~~~~i~~~~-~~v~L~v 103 (104) T 2z17_A 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSG-NLLTIET 103 (104) T ss_dssp CCTTCBCCEETTEECTTCCHHHHHHHHHHTT-TEEEEEC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE T ss_conf 9889999999999989999999999997698-9799998 No 195 >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Probab=34.06 E-value=19 Score=14.42 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=68.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHH-HHHCC Q ss_conf 728999999999999874865677-2012001204779999998199600100117653210110644677765-32013 Q gi|254780336|r 271 GRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFG-VKLKH 348 (488) Q Consensus 271 g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~-v~~K~ 348 (488) |.+++++-+-+.. -.| +|+-.|+.+. +.-+++.+.+|.--+.- +. . -|+|.+=+.. ++.++ T Consensus 87 gEs~~Dt~~~ls~--------~~d~ivvR~~~~~~--~~~~a~~~~vpVINa~~-----~~-~-HPtQaL~Dl~Ti~e~~ 149 (328) T 3grf_A 87 KETVQDTAEVFSR--------MVDICTARLATKEM--MREMAQHASVPCINALD-----DF-G-HPLQMVCDFMTIKEKF 149 (328) T ss_dssp --CHHHHHHHHTT--------TCSEEEEECSSHHH--HHHHHHHCSSCEEESSC-----SS-C-CHHHHHHHHHHHHHHH T ss_pred CEEHHHHHHHHHC--------CCCEEEEECCCHHH--HHHHHHHCCCCEECCCC-----CC-C-CCHHHHHHHHHHHHHH T ss_conf 6219999998733--------46534565250335--66777507862354776-----56-6-8269999999999984 Q ss_pred ---CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf ---4324553389328974035333338889999985399789999658980588 Q gi|254780336|r 349 ---SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488) Q Consensus 349 ---~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488) ..++..++|.++++++|. +.++....+..+...|+ .+++++|+-..| T Consensus 150 g~~~~~~~~~~~l~i~~~gd~--~~~v~~S~~~~~~~~g~---~v~i~~P~~~~~ 199 (328) T 3grf_A 150 TAAGEFSNGFKGIKFAYCGDS--MNNVTYDLMRGCALLGM---ECHVCCPDHKDF 199 (328) T ss_dssp HHTTCCTTTGGGCCEEEESCC--SSHHHHHHHHHHHHHTC---EEEEECCSSGGG T ss_pred CCCCCCCCCCCCCEEEECCCC--CCCHHHHHHHHHHHCCC---EEEEECCCCCCC T ss_conf 653334675136247632777--65426799999997799---699963653355 No 196 >2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Probab=34.05 E-value=19 Score=14.42 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=25.8 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 53389328974035333338889999985399789999658 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) +-.|.+|+-|++-=|.|-|...++++||++| ..|.+.+.- T Consensus 52 L~~GD~I~~INg~~v~~~t~~~~~~~lr~~~-~~v~l~v~R 91 (97) T 2iwn_A 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG-QTVLLTLMR 91 (97) T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHTCC-SEEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE T ss_conf 9999999999999978998999999987699-869999993 No 197 >1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Probab=33.93 E-value=19 Score=14.41 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=29.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|.|-|....+++||.++ ..|.+.+. T Consensus 52 L~~GD~Il~VNg~~v~~~t~~~av~~l~~~~-~~v~L~V~ 90 (95) T 1mfg_A 52 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIV 90 (95) T ss_dssp CCTTCEEEEETTEECTTCBHHHHHHHHHHCC-SEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 8899999999999988998999999998199-97999999 No 198 >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Probab=33.92 E-value=19 Score=14.41 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=62.8 Q ss_pred CC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHH-HHCCCCCHHHHCCCCEEEEEHHHHHH Q ss_conf 77-20120012047799999981996001001176532101106446777653-20134324553389328974035333 Q gi|254780336|r 293 AD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV-KLKHSANRTILAGKRVVLIDDSIVRG 370 (488) Q Consensus 293 ~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v-~~K~~~~~~~i~gk~vvlvDDSIVRG 370 (488) .| +|+=.|+.+.+ ..+|+.+.+|.--|.-. . =-|+|.+=+..- +.++ ..++|++|++|-| .. T Consensus 102 ~D~iviR~~~~~~~--~~~a~~s~vPVINg~~~-~------~HPtQaL~Dl~Ti~e~~----g~~~~l~i~~vGd---~~ 165 (315) T 1pvv_A 102 VDAIMARVYDHKDV--EDLAKYATVPVINGLSD-F------SHPCQALADYMTIWEKK----GTIKGVKVVYVGD---GN 165 (315) T ss_dssp CSEEEEECSSHHHH--HHHHHHCSSCEEEEECS-S------CCHHHHHHHHHHHHHHH----SCCTTCEEEEESC---CC T ss_pred CCEEEEEECCHHHH--HHHHHHCCCCEEECCCC-C------CCHHHHHHHHHHHHHHH----CCCCCCEEEEECC---CC T ss_conf 88788860571069--99998679988969998-6------46778987678999872----8756877999678---75 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC Q ss_conf 33888999998539978999965898058865 Q gi|254780336|r 371 TTSVKIVQMIRSAGASEVHLRVASPMVLYPDF 402 (488) Q Consensus 371 tT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~ 402 (488) ++.+..+.++...|+ .+++++|+-..|-. T Consensus 166 ~v~~S~~~~~~~~g~---~v~~~~P~~~~~~~ 194 (315) T 1pvv_A 166 NVAHSLMIAGTKLGA---DVVVATPEGYEPDE 194 (315) T ss_dssp HHHHHHHHHHHHTTC---EEEEECCTTCCCCH T ss_pred CHHHHHHHHHHHHCC---CEEEECCCCCCCCH T ss_conf 315689999998418---78998898668868 No 199 >1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Probab=33.85 E-value=19 Score=14.40 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=30.2 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 338932897403533333888999998539978999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) -.|.+|+-|++-=|++.|-..++++|+++| .+|.+.+- T Consensus 42 ~~GD~Il~VNg~~v~~~t~~~~~~ll~~~~-~~v~L~V~ 79 (82) T 1r6j_A 42 LTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITIM 79 (82) T ss_dssp CSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 989999999999978998999999997299-97999997 No 200 >2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=33.83 E-value=19 Score=14.40 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=31.2 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+-|++--|++-|...++++||.++ +|.+.+..| T Consensus 54 L~~GD~Il~INg~~v~~~~~~~~v~ll~~~~--~v~L~V~r~ 93 (100) T 2eeh_A 54 LCVGDKITEVNGLSLESTTMGSAVKVLTSSS--RLHMMVRRM 93 (100) T ss_dssp CCSSCEEEEETTEECSSCCHHHHHHHHHSCS--SEEEEEEEC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC--EEEEEEEEC T ss_conf 9999999999999999998999999870899--599999989 No 201 >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Probab=33.31 E-value=19 Score=14.34 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=20.3 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 93289740353333388899999853997899996 Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) =||++|||+-. ..+.+.++|+..|...|+++. T Consensus 3 irVLiVDD~~~---~~~~l~~~L~~~g~~~v~~a~ 34 (133) T 2r25_B 3 VKILVVEDNHV---NQEVIKRMLNLEGIENIELAC 34 (133) T ss_dssp SCEEEECSCHH---HHHHHHHHHHHTTCCCEEEES T ss_pred CEEEEEECCHH---HHHHHHHHHHHCCCEEEEEEC T ss_conf 88999969899---999999999986994899989 No 202 >2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, structural genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Probab=32.85 E-value=20 Score=14.29 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=27.7 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+=|++--|++-|...++++||++| ..|.+.+..+ T Consensus 58 L~~GD~Il~VNg~~v~~~t~~ea~~~l~~~~-~~v~L~v~r~ 98 (103) T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSI 98 (103) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 9989999999999988998999999998489-9599999967 No 203 >2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=32.48 E-value=20 Score=14.25 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=37.6 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf 53389328974035333338889999985399789999658980588 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488) +-.|.+|+=|++--|+|-|....+++||.++ ..|.+.+.-|+-.+. T Consensus 62 L~~GD~Il~INg~~v~~~t~~ea~~~ik~~~-~~v~L~V~r~~~~~~ 107 (116) T 2dm8_A 62 LWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDEAHYR 107 (116) T ss_dssp CCTTCEEEEETTEECSSSCHHHHHHHHHTCC-SEEEEEEECCSSCCC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCCCC T ss_conf 9999999999999988998999999997499-859999996886667 No 204 >3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synaptic density, glutametergic receptors, carbohydrate metabolism, cell cycle; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Probab=32.43 E-value=20 Score=14.24 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=31.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|..|+-|++-=|+|-|...++.+||.++ ..|.+.|+ T Consensus 130 L~~GD~Il~VNg~~l~~~s~~eav~~lr~~~-~~v~L~V~ 168 (170) T 3egg_C 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIG 168 (170) T ss_dssp CCTTCEEEEETTEECTTBCHHHHHHHHHHCC-SEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 9889999999999888998999999998799-86999999 No 205 >1u3b_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 2yt8_A Probab=32.22 E-value=20 Score=14.22 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=32.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-||+-=|++.|...++++||.++ ..|++.|- T Consensus 130 L~~GD~Il~VNG~~v~~~s~~e~~~ll~~~~-~~v~l~V~ 168 (185) T 1u3b_A 130 VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM 168 (185) T ss_dssp CCTTEEEEEETTEECTTSCHHHHHHHHHTCC-EEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CEEEEEEE T ss_conf 9989999999998998999999999998199-95999995 No 206 >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Probab=32.16 E-value=20 Score=14.21 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=14.4 Q ss_pred HHHHHHHHHCCCCCC------CCCCHHHHHHHHHH Q ss_conf 999999986498242------34307898898987 Q gi|254780336|r 123 LTLRKKLISSGAIFQ------STSDTEVILHLIAR 151 (488) Q Consensus 123 ~eLr~~L~~~g~~f~------s~sDTEvI~~Li~~ 151 (488) +.+.+.|.+.|..+. .+.+.|.+...+.. T Consensus 59 ~~v~~~L~~~~i~~~vf~~v~~~p~~~~v~~~~~~ 93 (371) T 1o2d_A 59 DDLKKLLDETEISYEIFDEVEENPSFDNVMKAVER 93 (371) T ss_dssp HHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHH T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH T ss_conf 99999998769859996886689799999999999 No 207 >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Probab=32.08 E-value=20 Score=14.20 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=12.7 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9328974035333338889999985399 Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488) |||++|||+-. ..+.+...|.+.|- T Consensus 3 ~rILvVDD~~~---~~~~l~~~L~~~g~ 27 (122) T 3gl9_A 3 KKVLLVDDSAV---LRKIVSFNLKKEGY 27 (122) T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTTC T ss_pred CCEEEEECCHH---HHHHHHHHHHHCCC T ss_conf 85999969999---99999999998799 No 208 >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Probab=31.84 E-value=20 Score=14.18 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=72.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHH-HHHCC Q ss_conf 37289999999999998748656772012001204779999998199600100117653210110644677765-32013 Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFG-VKLKH 348 (488) Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~-v~~K~ 348 (488) -|.++.++=+-|. .-.+ .+|+-.|+.+.. .-+++.+.+|.--|.-. . =-|+|.+=+.. ++.++ T Consensus 108 kgEs~~Dt~~~ls----~y~D---~iv~R~~~~~~~--~~~a~~~~vPvIN~~~~-----~--~HPtQaL~Dl~Ti~e~~ 171 (359) T 2w37_A 108 KKESTSDTAKVLG----SMFD---GIEFRGFKQSDA--EILARDSGVPVWNGLTD-----E--WHPTQMLADFMTVKENF 171 (359) T ss_dssp TSSCHHHHHHHHH----HHCS---EEEEESSCHHHH--HHHHHHSSSCEEEEECS-----S--CCHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH----HCCC---EEEEECCCHHHH--HHHHHHCCCCEECCCCC-----C--CCHHHHHHHHHHHHHHH T ss_conf 7422889999864----0464---465515505569--99986148856657777-----4--57899999999999983 Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC Q ss_conf 432455338932897403533333888999998539978999965898058865 Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDF 402 (488) Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~ 402 (488) ..++|+++++|-| .+.++....+.++...|. ++++++|+-..|.. T Consensus 172 ----g~l~~~~i~~vgd--~~~~v~~S~~~~~~~~g~---~v~~~~P~~~~p~~ 216 (359) T 2w37_A 172 ----GKLQGLTLTFMGD--GRNNVANSLLVTGAILGV---NIHIVAPKALFPTE 216 (359) T ss_dssp ----SCCTTCEEEEESC--TTSHHHHHHHHHHHHHTC---EEEEECCGGGSCCH T ss_pred ----CCCCCCEEEEECC--CCCCCCCCHHHHHHHCCC---EEEEECCCCCCCCH T ss_conf ----9635755999868--865715568999864699---89995783348868 No 209 >2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Probab=31.83 E-value=20 Score=14.18 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=33.5 Q ss_pred HHCCCCEEEEEHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 533893289740353-3333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIV-RGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIV-RGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+-|++--| +|.|...++++||+++- .|.+.++=|| T Consensus 68 L~~GD~Il~VNg~~v~~~~~~~~a~~~lk~~~~-~v~L~v~R~~ 110 (117) T 2o2t_A 68 LKETDQILAINGQALDQTITHQQAISILQKAKD-TVQLVIARGS 110 (117) T ss_dssp CCTTCEEEEETTEECCTTSCHHHHHHHHHHCCS-EEEEEEESSC T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHCCCC-EEEEEEEECC T ss_conf 989999999999997779899999999973999-5999998489 No 210 >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Probab=31.78 E-value=20 Score=14.17 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=20.1 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEE Q ss_conf 893289740353333388899999853997-89999 Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLR 391 (488) Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~r 391 (488) +|||++|||+-.- .+.+-++|++.|.. +|+.. T Consensus 2 ~krILiVdDd~~~---~~~l~~~L~~~g~~~~v~~a 34 (140) T 1k68_A 2 HKKIFLVEDNKAD---IRLIQEALANSTVPHEVVTV 34 (140) T ss_dssp CCEEEEECCCHHH---HHHHHHHHHTCSSCCEEEEE T ss_pred CCEEEEEECCHHH---HHHHHHHHHHCCCCCEEEEE T ss_conf 9809999799999---99999999967998189998 No 211 >1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A Probab=31.77 E-value=20 Score=14.17 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=21.2 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 33893289740353333388899999853997899996 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) -.|..|+-|++-=|.|.|...++++||++| ..|.+.+ T Consensus 64 ~~GD~Il~vng~~v~~~~~~~v~~~i~~~~-~~v~l~V 100 (109) T 1q3o_A 64 RMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKV 100 (109) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE T ss_conf 879999999999989998999999998299-9699999 No 212 >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Probab=31.69 E-value=20 Score=14.16 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=44.8 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--------HHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCC Q ss_conf 9999998748656772012001204779999--------99819960010011765321011064467776532013432 Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVPAAIGY--------AKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSAN 351 (488) Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~aA~gy--------a~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~ 351 (488) ++-..|++ ....+=+++|=|++-...-..+ ....++|+..-+.|...-.| |+.. .|.... T Consensus 195 ~~~~~~~~-~G~~Ii~~sgR~~~~~~~T~~~l~~~~~~~~~~~~~~~~~l~mr~~~d~r----~d~~-------~K~e~~ 262 (301) T 1ltq_A 195 ELSKMYAL-MGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTR----KDDV-------VKEEIF 262 (301) T ss_dssp HHHHHHHH-TTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCCCSEEEECCTTCCS----CHHH-------HHHHHH T ss_pred HHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCCCCC----CHHH-------HHHHHH T ss_conf 99999985-79869999377404777279999861010433469753010367888989----5489-------999999 Q ss_pred HHHHCCC-C-EEEEEHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 4553389-3-289740353333388899999853997899 Q gi|254780336|r 352 RTILAGK-R-VVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 (488) Q Consensus 352 ~~~i~gk-~-vvlvDDSIVRGtT~k~iv~~lr~aGa~evh 389 (488) ...+.++ + +.++||- .++|.|.|+.|-.-.- T Consensus 263 ~~~~~~~~~v~~~fdDr-------~~vv~~wr~~gl~~~q 295 (301) T 1ltq_A 263 WKHIAPHFDVKLAIDDR-------TQVVEMWRRIGVECWQ 295 (301) T ss_dssp HHHTTTTCEEEEEEECC-------HHHHHHHHHTTCCEEE T ss_pred HHHCCCCCCEEEEECCC-------HHHHHHHHHCCCCEEE T ss_conf 98526788659998797-------5899999984992798 No 213 >2uzc_A Human pdlim5, PDZ and LIM domain 5; polymorphism, metal-binding, enigma homolog, phosphorylation, signaling protein, zinc, PDZ domain, acetylation; 1.5A {Homo sapiens} Probab=31.21 E-value=21 Score=14.11 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=28.0 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 3389328974035333338889999985399789999658 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488) -.|..|+-|++--|++-|...++++||.+| .+|++.+.- T Consensus 46 ~~GD~Il~INg~~v~~~t~~ea~~~l~~~~-~~v~L~V~R 84 (88) T 2uzc_A 46 RIGDVVLSIDGINAQGMTHLEAQNKIKGCT-GSLNMTLQR 84 (88) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE T ss_conf 999899999999999998999999987699-979999994 No 214 >1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Probab=31.10 E-value=21 Score=14.09 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=27.1 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 338932897403533333888999998539978999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) -.|.+|+=|++--|+|-|...++++||.++. .|.+.+. T Consensus 57 ~~GD~Il~INg~~v~~~s~~~~~~li~~~~~-~v~L~V~ 94 (98) T 1ihj_A 57 KVGDRILSLNGKDVRNSTEQAVIDLIKEADF-KIELEIQ 94 (98) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHSCS-EEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE T ss_conf 9999999999999889989999999987999-6999999 No 215 >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Probab=31.01 E-value=21 Score=14.08 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=16.3 Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCC Q ss_conf 328974035333338889999985399 Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488) ..|-+++ |.+.|+++||+-+..... T Consensus 37 e~Ipl~~--V~~~~L~kVi~~c~~h~~ 61 (141) T 1fs1_B 37 DPVPLPN--VNAAILKKVIQWCTHHKD 61 (141) T ss_dssp SSEECTT--CCHHHHHHHHHHHHHHTT T ss_pred CCCCCCC--CCHHHHHHHHHHHHHHCC T ss_conf 8526886--678999999999998442 No 216 >2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=30.92 E-value=21 Score=14.07 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=29.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 5338932897403533333888999998539978999965898 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) +-.|.+|+=|++--|++.|...++++|++++ ..|.+.+-.++ T Consensus 48 L~~GD~Il~INg~~v~~~~~~ev~~~i~~~~-~~v~l~V~~~~ 89 (102) T 2d90_A 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLLVLDKE 89 (102) T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHST-TEEEEEECSTT T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC T ss_conf 9889999999999989998999999997499-96999999789 No 217 >1u37_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1u38_A Probab=30.74 E-value=21 Score=14.05 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.2 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEE Q ss_conf 3389328974035333338889999985399-7899996 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRV 392 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri 392 (488) -.|..|+-|++--|+|.|...++++||.++. ..|.+.+ T Consensus 49 ~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~L~v 87 (89) T 1u37_A 49 NIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI 87 (89) T ss_dssp CSSCEEEEETTEECTTSCHHHHHHHHHTCSSSSEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE T ss_conf 999999999999988998999999997399998999999 No 218 >1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Probab=30.64 E-value=21 Score=14.04 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=31.0 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCC Q ss_conf 3893289740353333388899999853997-8999965898 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRVASPM 396 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri~sPp 396 (488) .|.+|+-|++--|+|-|...++++||.++.. .+.+..-.|+ T Consensus 54 ~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~~~l~l~~r~~~ 95 (127) T 1b8q_A 54 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95 (127) T ss_dssp TTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 998999989999889969999999972999769999993999 No 219 >2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Probab=30.61 E-value=21 Score=14.04 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=29.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|..|+-|++--|+|.|...++++||.++ .+|.+.+. T Consensus 42 L~~GD~Il~INg~~v~~~~~~~v~~~i~~~~-~~v~l~v~ 80 (91) T 2f5y_A 42 LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVW 80 (91) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 9779999999999979999999999987799-97999999 No 220 >1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal binding protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A Probab=30.33 E-value=22 Score=14.01 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=30.1 Q ss_pred EECCCCCEEEEEECCCEEEEEECCHHCCCC---CCCEEEECCCCEEEEEE Q ss_conf 825665415998269569998612001047---87412331787079994 Q gi|254780336|r 186 RDPIGIRPLIMGELHGKPIFCSETCALEIT---GAKYIRDVENGETIVCE 232 (488) Q Consensus 186 RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i---g~~~irdv~PGEiivi~ 232 (488) =.|-|+|++.|.......++-+=++.+..+ |-.++.+|++|+++++- T Consensus 86 L~pGa~~~pHwH~~aE~~yVl~G~~~vt~Vd~~Gr~~~~~l~~GDv~~~P 135 (385) T 1j58_A 86 LKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFP 135 (385) T ss_dssp ECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEEC T ss_pred ECCCCCCCCCCCCHHHEEEEEEEEEEEEEECCCCCEEEEEECCCCEEEEC T ss_conf 67996867724663638999953799999917994899872478789988 No 221 >3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Probab=30.14 E-value=22 Score=13.99 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=31.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|+|.|...++++|+.++. +|.+.+. T Consensus 64 L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~-~v~l~i~ 102 (125) T 3hpk_A 64 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIHYN 102 (125) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHSCS-EEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE T ss_conf 99899999999999899989999999980999-0999999 No 222 >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Probab=29.59 E-value=22 Score=13.92 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=60.8 Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHH-HHHCCCCCHHHHCCCCEEEEEHHHHHHHHH Q ss_conf 2012001204779999998199600100117653210110644677765-320134324553389328974035333338 Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFG-VKLKHSANRTILAGKRVVLIDDSIVRGTTS 373 (488) Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~-v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~ 373 (488) +|+=.|+.+.. .-+|+.+.+|.--+.--+. =-|+|.+=+.. ++.++. .++|++|.+|=| +-.+.+. T Consensus 104 iviR~~~~~~~--~~~a~~~~vPVINAg~~~~------~HPtQ~L~Dl~Ti~e~~g----~l~glki~~vGd-~~~~~v~ 170 (308) T 1ml4_A 104 IVIRHPKEGAA--RLAAEVAEVPVINAGDGSN------QHPTQTLLDLYTIKKEFG----RIDGLKIGLLGD-LKYGRTV 170 (308) T ss_dssp EEEEESSTTHH--HHHHHTCSSCEEEEEETTS------CCHHHHHHHHHHHHHHSS----CSSSEEEEEESC-TTTCHHH T ss_pred EEEEECHHHHH--HHHHHCCCCCEEECCCCCC------CCHHHHHHHHHHHHHHCC----CCCCCEEEEECC-CCCCHHH T ss_conf 99972300058--9987558976775777987------680789986861756338----835777986458-7644128 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCC Q ss_conf 8899999853997899996589805886 Q gi|254780336|r 374 VKIVQMIRSAGASEVHLRVASPMVLYPD 401 (488) Q Consensus 374 k~iv~~lr~aGa~evh~ri~sPpi~~pc 401 (488) +..+..+...| +++++++|+-..|+ T Consensus 171 ~S~~~~~~~~g---~~~~~~~P~~~~~~ 195 (308) T 1ml4_A 171 HSLAEALTFYD---VELYLISPELLRMP 195 (308) T ss_dssp HHHHHHGGGSC---EEEEEECCGGGCCC T ss_pred HHHHHHHHHCC---CEEEEECCHHHCCC T ss_conf 88999998769---83999796475487 No 223 >2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Probab=29.26 E-value=22 Score=13.88 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=26.7 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEE Q ss_conf 338932897403533333888999998539-97899996 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRV 392 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri 392 (488) -.|.+|+-|++--|+|-|...++++||.+- ...|.+.+ T Consensus 45 ~~GD~Il~VNg~~v~~~~~~ev~~~l~~~~~g~~v~L~v 83 (85) T 2i04_A 45 ETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLEL 83 (85) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE T ss_conf 899999999999988996999999997699989999999 No 224 >1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Probab=28.92 E-value=23 Score=13.84 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=29.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 533893289740353333388899999853997899996 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) +-.|.+|+-|++--|+|-+...++++||.++ ..|-+.+ T Consensus 67 l~~GD~Il~Ing~~v~~~~~~~v~~ll~~~~-~~v~l~v 104 (113) T 1va8_A 67 LHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVL 104 (113) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEE T ss_pred CCCCCEEEEECCCEECCCCHHHHHHHHHCCC-CCEEEEE T ss_conf 9749999999991777996999999985699-9299999 No 225 >2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Probab=28.80 E-value=23 Score=13.83 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=31.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 33893289740353333388899999853997899996589 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) -.|.+|+-||+--|++-|...++.+|++++ ..|.+.+.-| T Consensus 53 ~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 92 (97) T 2w4f_A 53 RVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRE 92 (97) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEECC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 999999999999999999999999976898-9899999989 No 226 >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Probab=28.34 E-value=23 Score=13.78 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=19.3 Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 45533893289740353333388899999853997 Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488) Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488) +.-+++-||++|||+-.--.. +..+|...|.. T Consensus 9 ~~~lr~lrILiVDD~~~~r~~---l~~~L~~~g~~ 40 (143) T 3m6m_D 9 RARVRSMRMLVADDHEANRMV---LQRLLEKAGHK 40 (143) T ss_dssp ------CEEEEECSSHHHHHH---HHHHHHC--CE T ss_pred HCCCCCCEEEEEECCHHHHHH---HHHHHHHCCCE T ss_conf 215689979999588999999---99999987999 No 227 >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* Probab=28.30 E-value=23 Score=13.77 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=57.5 Q ss_pred CCCCHHHHHH----HHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHH---HHHH Q ss_conf 0012047799----99998199600100117653210110644677765320134324553389328974035---3333 Q gi|254780336|r 299 IPDGGVPAAI----GYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSI---VRGT 371 (488) Q Consensus 299 VPdsg~~aA~----gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSI---VRGt 371 (488) --||-+++|. -||+.+|+|+.... ..++... .....+++.+|+||-+= ..-. T Consensus 141 t~Dt~R~~A~eQLk~~a~~l~vp~~~~~------------~~~~l~~---------a~~~~~~~d~vlIDTaGr~~~~~~ 199 (296) T 2px0_A 141 TTDTYRIAAVEQLKTYAELLQAPLEVCY------------TKEEFQQ---------AKELFSEYDHVFVDTAGRNFKDPQ 199 (296) T ss_dssp ECCCSSTTHHHHHHHHHTTTTCCCCBCS------------SHHHHHH---------HHHHGGGSSEEEEECCCCCTTSHH T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEE------------CHHHHHH---------HHHHHCCCCEEEEECCCCCCCCCC T ss_conf 8079976899999999974179850455------------5666999---------998722488899968884312221 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHH Q ss_conf 388899999853997899996589805886565005897888546699988999870997788833989 Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDG 440 (488) Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~ 440 (488) .+..+-++++...+-++|+.+++. +..+-+..- .+--+.++.+++.+--+|+ T Consensus 200 ~~~eL~~~~~~~~~~~~~LVl~a~-------------~~~~~~~~~----~~~~~~~~~~~lilTKLDe 251 (296) T 2px0_A 200 YIDELKETIPFESSIQSFLVLSAT-------------AKYEDMKHI----VKRFSSVPVNQYIFTKIDE 251 (296) T ss_dssp HHHHHHHHSCCCTTEEEEEEEETT-------------BCHHHHHHH----TTTTSSSCCCEEEEECTTT T ss_pred HHHHHHHHHHHHCCCEEEEEEECC-------------CCCHHHHHH----HHHHCCCCCCEEEEEEECC T ss_conf 799999975131686169997578-------------761359999----9996169998899981149 No 228 >3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Probab=28.15 E-value=23 Score=13.75 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=23.9 Q ss_pred HCCCCEEEE--EHHHHHHHHHHHHHHHHHHCCC Q ss_conf 338932897--4035333338889999985399 Q gi|254780336|r 355 LAGKRVVLI--DDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 355 i~gk~vvlv--DDSIVRGtT~k~iv~~lr~aGa 385 (488) +++.+++.- ++.+..|+|.+.++++++++|- T Consensus 186 v~~g~~~TPp~~~~~L~GitR~~vl~l~~~~g~ 218 (277) T 3daa_A 186 IKDGILYTHPANNMILKGITRDVVIACANEINM 218 (277) T ss_dssp EETTEEEECCSSTTSCCCHHHHHHHHHHHHTTC T ss_pred EECCEEECCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 989999717886664467899999999864035 No 229 >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H} Probab=27.77 E-value=23 Score=13.84 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=15.2 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 93289740353333388899999853997899 Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 (488) Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh 389 (488) |||++|||+-.-...++ .+|++.|. +|. T Consensus 4 ~rILIVDDd~~~~~~l~---~~L~~~g~-~v~ 31 (135) T 3eqz_A 4 NRVFIVDDDTLTCNLLK---TIVEPIFG-NVE 31 (135) T ss_dssp CEEEEECSCHHHHHHHH---HHHTTTCS-CEE T ss_pred CEEEEEECCHHHHHHHH---HHHHHCCC-EEE T ss_conf 99999929999999999---99997899-899 No 230 >2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural genomics, NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Probab=27.70 E-value=24 Score=13.70 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.5 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCC Q ss_conf 28974035333338889999985399 Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488) .++..|++..|+|.+.+++++++.|- T Consensus 172 ~~~Tp~~~L~GItR~~vi~~~~~~g~ 197 (246) T 2zgi_A 172 TLYLLEGGLEGITREKVAEAARGLGL 197 (246) T ss_dssp EEEEECSSCCCHHHHHHHHHHHHTTC T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 99995566797799999999997798 No 231 >1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Probab=27.51 E-value=24 Score=13.68 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=32.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 533893289740353333388899999853997899996589 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) +-.|.+|+-|++--|++-|...++++||.++. .|++.+--+ T Consensus 48 L~~GD~Il~INg~~v~~~t~~~~~~li~~~~~-~v~L~V~R~ 88 (94) T 1vb7_A 48 LRPGDIIVAINGQSAENMLHAEAQSKIRQSAS-PLRLQLDRS 88 (94) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCCS-SEEEEEECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEEC T ss_conf 99999999899999999999999999877998-399999989 No 232 >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406} Probab=27.37 E-value=24 Score=13.66 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=20.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEE Q ss_conf 533893289740353333388899999853997-8999 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHL 390 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ 390 (488) .-+.++|++|||+-. ..+.+.++|+..|.. +|.. T Consensus 6 ~~k~~~ILiVDDd~~---~~~~l~~~l~~~g~~~~v~~ 40 (146) T 3ilh_A 6 TRKIDSVLLIDDDDI---VNFLNTTIIRMTHRVEEIQS 40 (146) T ss_dssp -CCEEEEEEECSCHH---HHHHHHHHHHTTCCEEEEEE T ss_pred CCCCCEEEEEECCHH---HHHHHHHHHHHCCCCCEEEE T ss_conf 788997999979899---99999999997799818999 No 233 >1t2m_A AF-6 protein; chromosomal translocation, proto-oncogene, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2ain_A 1xz9_A 2exg_A* Probab=26.83 E-value=25 Score=13.59 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=28.3 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|+|-|-..++.+||.++ .+|.+.+. T Consensus 51 L~~GD~Il~INg~~v~~~s~~e~~~llk~~~-~~v~L~V~ 89 (101) T 1t2m_A 51 LAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVA 89 (101) T ss_dssp CCSSEEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 9999999999999988998999999998499-96999999 No 234 >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Probab=26.79 E-value=19 Score=14.41 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=15.8 Q ss_pred EEECCCCEEEEEEECCCCEEE Q ss_conf 233178707999408984799 Q gi|254780336|r 220 IRDVENGETIVCELQEDGFIS 240 (488) Q Consensus 220 irdv~PGEiivi~~~~~g~~~ 240 (488) +.+..+||+++.+++.+|..+ T Consensus 155 ~~~~g~~eii~~di~~dGt~~ 175 (244) T 1vzw_A 155 LNKEGCARYVVTDIAKDGTLQ 175 (244) T ss_dssp HHHTTCCCEEEEEC------- T ss_pred HHHHCCCEEEEEEECCCCCCC T ss_conf 875166458877762558766 No 235 >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} Probab=26.76 E-value=25 Score=13.59 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=3.4 Q ss_pred CCCEEEEEHH Q ss_conf 8932897403 Q gi|254780336|r 357 GKRVVLIDDS 366 (488) Q Consensus 357 gk~vvlvDDS 366 (488) +.+|++|||+ T Consensus 5 ~~~ILiVDDd 14 (132) T 2rdm_A 5 AVTILLADDE 14 (132) T ss_dssp SCEEEEECSS T ss_pred CCEEEEEECC T ss_conf 9989999799 No 236 >1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Probab=26.72 E-value=25 Score=13.58 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=27.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|..|+-|++--|++-|...++++|+.++. +|.+.+. T Consensus 43 L~~GD~Il~INg~~v~~~s~~ev~~~i~~~~~-~v~L~v~ 81 (85) T 1rgw_A 43 LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY-NLSLTLQ 81 (85) T ss_dssp CCCCSBEEEETTEECTTCCHHHHHHHHTTCSS-CEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE T ss_conf 99999999899999999979999999975999-7999999 No 237 >2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Probab=26.52 E-value=25 Score=13.56 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=33.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECC Q ss_conf 5338932897403533333888999998539-9789999658 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVAS 394 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~s 394 (488) +-.|.+|+-|+.--|+|.|...++++||.+- -.+|.+.+.- T Consensus 62 l~~GD~Il~INg~~v~~~t~~eav~~lr~~~~g~~v~L~v~R 103 (129) T 2kpk_A 62 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 103 (129) T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 988989999999987899899999999679999989999994 No 238 >2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structural genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Probab=26.49 E-value=25 Score=13.55 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=25.4 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 389328974035333338889999985399789999 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) .|..|+-||+--|+|-|...++++||.++. .|-+. T Consensus 71 ~GD~Il~VNg~~v~~~s~~ev~~llk~~~~-~v~L~ 105 (114) T 2gzv_A 71 AGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIH 105 (114) T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHHHCCS-EEEEE T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCC-CEEEE T ss_conf 999999999999789979999999975998-09999 No 239 >1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Probab=26.23 E-value=4.4 Score=18.93 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=7.7 Q ss_pred HHHHHHHHHHCCC Q ss_conf 8889999985399 Q gi|254780336|r 373 SVKIVQMIRSAGA 385 (488) Q Consensus 373 ~k~iv~~lr~aGa 385 (488) .+.+.+++++.|. T Consensus 303 ~~~i~~l~~~lgl 315 (376) T 1kq3_A 303 IEEVYSFCEEVGL 315 (376) T ss_dssp HHHHHHHHHHHTC T ss_pred HHHHHHHHHHCCC T ss_conf 9999999998699 No 240 >1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Probab=26.12 E-value=25 Score=13.51 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=23.3 Q ss_pred HCCCCEEEE--EHHHHHHHHHHHHHHHHHHCCC Q ss_conf 338932897--4035333338889999985399 Q gi|254780336|r 355 LAGKRVVLI--DDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 355 i~gk~vvlv--DDSIVRGtT~k~iv~~lr~aGa 385 (488) +++++++.- ++.+++|+|.+.+++++.+.|- T Consensus 203 v~~~~i~TPp~~~~iL~GItR~~vie~~~~~g~ 235 (309) T 1iye_A 203 VKDGVLFTPPFTSSALPGITRDAIIKLAKELGI 235 (309) T ss_dssp EETTEEEECCGGGTCCCCHHHHHHHHHHHHTTC T ss_pred ECCCEEEECCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 719999955506643356799999999997399 No 241 >1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Probab=25.77 E-value=26 Score=13.46 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=30.4 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 338932897403533333888999998539978999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) -.|..|+=|++--|+|-|...++++|+.++ ..|.+.+. T Consensus 45 ~~GD~Il~INg~~v~~~~~~ev~~ll~~~~-~~v~L~v~ 82 (88) T 1kwa_A 45 HVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIV 82 (88) T ss_dssp CTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEE T ss_conf 889999999999977998999999997699-96999998 No 242 >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Probab=25.70 E-value=26 Score=13.45 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=12.9 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9328974035333338889999985399 Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488) |||++|||+-.- .+.+..+|.+.|. T Consensus 2 kriLiVdD~~~~---~~~l~~~L~~~g~ 26 (124) T 1mb3_A 2 KKVLIVEDNELN---MKLFHDLLEAQGY 26 (124) T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTC T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCC T ss_conf 759999589999---9999999998799 No 243 >2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genomics, structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Probab=25.69 E-value=26 Score=13.45 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=26.1 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|+|-|...++++||.++. .|++.+. T Consensus 53 L~~GD~Il~VNg~~v~~~s~~~v~~~l~~~~~-~v~L~v~ 91 (102) T 2i1n_A 53 LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGP-VVRLVVR 91 (102) T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHSCS-EEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE T ss_conf 99998999999999889989999999973899-6999999 No 244 >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Probab=25.50 E-value=26 Score=13.43 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=17.0 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 89328974035333338889999985399789999 Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) +++|++|||+-..-.+++ .+|.+.|--+|..+ T Consensus 4 ~~~ILiVDD~~~~r~~l~---~~L~~~G~~~v~~a 35 (140) T 3lua_A 4 DGTVLLIDYFEYEREKTK---IIFDNIGEYDFIEV 35 (140) T ss_dssp CCEEEEECSCHHHHHHHH---HHHHHHCCCEEEEE T ss_pred CCEEEEEECCHHHHHHHH---HHHHHCCCEEEEEE T ss_conf 997999949999999999---99986799089998 No 245 >1xfj_A Conserved hypothetical protein; structural genomics, protein structure initiative (PSI), alpha-beta-BETA-alpha, two-domain structure; 1.75A {Caulobacter vibrioides} SCOP: d.194.1.2 Probab=25.24 E-value=15 Score=15.15 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=25.4 Q ss_pred HHHHHHH---HHHHHHHHCCCC--EEEEEECCCCCCCCCCCCEECCCHHHHHH Q ss_conf 3333388---899999853997--89999658980588656500589788854 Q gi|254780336|r 368 VRGTTSV---KIVQMIRSAGAS--EVHLRVASPMVLYPDFYGIDIPDPTALLA 415 (488) Q Consensus 368 VRGtT~k---~iv~~lr~aGa~--evh~ri~sPpi~~pc~yGid~p~~~eLia 415 (488) =|||... +.++++++.|++ ++++.|+ |-+.||+|-++-.-.+++.+ T Consensus 134 WrG~~~gI~~~~i~~~~~~g~~~~~i~a~IG--P~I~~~cYEV~~ev~~~f~~ 184 (261) T 1xfj_A 134 WRGALDGVVQSAVDRMVELGASPANITGVVG--PCIGPKSYEVGLEFLHRFEA 184 (261) T ss_dssp HHHHHHTHHHHHHHHHHHTTCCGGGCEEEEC--SBCCTTTCEEEHHHHHHHHH T ss_pred CHHHHCCCHHHHHHHHHHCCCCHHHEEEEEC--CCCCCCCCCCCHHHHHHHHH T ss_conf 5545437689999999981997566489974--51255322128999999987 No 246 >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Probab=25.13 E-value=25 Score=13.59 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=35.5 Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCCCCC Q ss_conf 4553389328974035333338889999985399----789999658980588 Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA----SEVHLRVASPMVLYP 400 (488) Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa----~evh~ri~sPpi~~p 400 (488) +..-+.++|++|||+-..|--...|...|-+.|- ..+ .|+++|..-.| T Consensus 263 ~~~~k~~~vv~vEE~~~~gG~gs~i~~~l~e~~~~~l~~~~-~ri~~~d~p~p 314 (338) T 1qs0_B 263 ESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPI-ERVTGWDTPYP 314 (338) T ss_dssp HHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCC-EEEECCSSCCC T ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC-EEECCCCCCCC T ss_conf 98716886999977987788899999999984565379984-89678977899 No 247 >3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 2ka9_A Probab=25.12 E-value=26 Score=13.38 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=26.7 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 3893289740353333388899999853997899996589 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488) .|.+|+-||+--|++-|-..++++||.++ ..|++.+.=| T Consensus 151 ~GD~Il~VNg~~v~~~s~~e~~~~lk~~~-~~v~L~V~R~ 189 (196) T 3gsl_A 151 IGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKP 189 (196) T ss_dssp TTCEEEEETTEECSSCBHHHHHHHHHSCC-EEEEEEEEEE T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC T ss_conf 89999999999988999999999997599-8699999869 No 248 >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* Probab=24.96 E-value=27 Score=13.36 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=7.0 Q ss_pred CHHHHHHHHHHCCC Q ss_conf 78999999986498 Q gi|254780336|r 121 NGLTLRKKLISSGA 134 (488) Q Consensus 121 N~~eLr~~L~~~g~ 134 (488) +.+.+-+.+.+-|. T Consensus 84 ~~e~il~k~tELGV 97 (228) T 1v6z_A 84 KLAEVVRAATELGA 97 (228) T ss_dssp HHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHEEE T ss_conf 89999999884311 No 249 >1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Probab=24.91 E-value=27 Score=13.36 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=28.1 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 3389328974035333338889999985399789999 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488) -+++.|++++.+ |..++...++|+++|-+.|+.. T Consensus 72 ~~~~~vv~~c~~---G~rS~~aa~~L~~~G~~nv~~l 105 (134) T 1vee_A 72 PENTTLYILDKF---DGNSELVAELVALNGFKSAYAI 105 (134) T ss_dssp GGGCEEEEECSS---STTHHHHHHHHHHHTCSEEEEC T ss_pred CCCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEEE T ss_conf 899879997488---5479999999998199757995 No 250 >1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=24.85 E-value=27 Score=13.35 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.5 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEE Q ss_conf 53389328974035333338889999985399-7899996 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRV 392 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri 392 (488) +-.|.+|+-|++-=|+|-|-..++++||++.+ .+|.+.+ T Consensus 48 L~~GD~Il~VNg~~v~~~t~~evv~~lr~~~~g~~v~L~v 87 (96) T 1ujv_A 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87 (96) T ss_dssp CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE T ss_conf 8999999999999968998999999997299999899999 No 251 >3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Probab=24.70 E-value=27 Score=13.33 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=29.2 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 338932897403533333888999998539978999965 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) -.|.+|+-|+.--|+|.|...++++||.++. +|.+.+. T Consensus 41 ~~GD~Il~INg~~v~~~s~~ea~~~i~~~~~-~v~L~V~ 78 (88) T 3e17_A 41 HEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVL 78 (88) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHTTT-EEEEEEC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE T ss_conf 9899999999999889989999999987999-7999999 No 252 >3mks_A Suppressor of kinetochore protein 1; ubiquitin ligase, protein binding, small molecule complex, ligase/cell cycle; HET: C1C; 2.60A {Saccharomyces cerevisiae} PDB: 1nex_A* Probab=24.27 E-value=27 Score=13.27 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=14.8 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHC Q ss_conf 289740353333388899999853 Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSA 383 (488) Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~a 383 (488) ++=+.+ |.|.|++.|+.-+... T Consensus 51 ~Iplp~--V~~~iL~kVi~~c~~H 72 (169) T 3mks_A 51 VMPVPN--VRSSVLQKVIEWAEHH 72 (169) T ss_dssp EEECTT--CCHHHHHHHHHHHHHT T ss_pred CCCCCC--CCHHHHHHHHHHHHHH T ss_conf 403898--7899999999999972 No 253 >1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Probab=24.25 E-value=27 Score=13.27 Aligned_cols=41 Identities=10% Similarity=0.263 Sum_probs=33.8 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC Q ss_conf 53389328974035333338889999985399-789999658 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVAS 394 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~s 394 (488) +-.|..|+-|++--|+|-|...++++||.+-. ..|.+.+.- T Consensus 68 l~~GD~Il~INg~~v~~~~~~ev~~~lk~~~~g~~v~L~v~R 109 (126) T 1wif_A 68 LQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109 (126) T ss_dssp SCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEES T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 998999999999997899899999999679999989999994 No 254 >1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1 Probab=23.98 E-value=28 Score=13.24 Aligned_cols=52 Identities=8% Similarity=0.243 Sum_probs=35.1 Q ss_pred HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC--CEEEEEE Q ss_conf 677765320134324553389328974035333338889999985399--7899996 Q gi|254780336|r 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA--SEVHLRV 392 (488) Q Consensus 338 ~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa--~evh~ri 392 (488) ++|..+.+ +++...++..++++|||-.+--...|.++++|...|. +.+-+.+ T Consensus 103 K~r~lAl~---~ALs~k~~~~~l~VVd~~~~~~~KTK~~~~~l~~l~~~~~~~Liv~ 156 (225) T 1dmg_A 103 KMKKLALR---SALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVL 156 (225) T ss_dssp HHHHHHHH---HHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEE T ss_pred HHHHHHHH---HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE T ss_conf 99999999---9988875279579961454567568999999987386766314531 No 255 >2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} Probab=23.97 E-value=28 Score=13.24 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=14.1 Q ss_pred CCCE-EEECCCCEEEEEEEEEECC Q ss_conf 7867-8746997199999655087 Q gi|254780336|r 99 VQPL-FADLQVGGIAIAHNGNFTN 121 (488) Q Consensus 99 ~QPf-~~~~~~g~iaiaHNGnI~N 121 (488) .+|| ++.+.-|...|+|+|..++ T Consensus 8 ~~~~~f~~s~rG~~~Lv~~Gy~Y~ 31 (87) T 2rpr_A 8 LRPLEFLRTSLGGRFLVHESFLYR 31 (87) T ss_dssp SCCCEEEEETTTEEEEEETTEEEE T ss_pred CCCEEEEECCCCCCEEEECCEEEE T ss_conf 547799986899838998998987 No 256 >3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A Probab=23.90 E-value=28 Score=13.23 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=25.7 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 38932897403533333888999998539978999 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488) +++.|+++..| |..+....+.|+++|-+-+++ T Consensus 55 ~~~~iv~~C~~---G~rs~~aa~~L~~~G~~~v~l 86 (103) T 3eme_A 55 KNEIYYIVCAG---GVRSAKVVEYLEANGIDAVNV 86 (103) T ss_dssp TTSEEEEECSS---SSHHHHHHHHHHTTTCEEEEE T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHCCCCEEEE T ss_conf 79639999499---979999999999859988996 No 257 >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Probab=23.41 E-value=28 Score=13.16 Aligned_cols=34 Identities=3% Similarity=0.160 Sum_probs=23.1 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEE Q ss_conf 3893289740353333388899999853997-899996 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRV 392 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri 392 (488) +..+|++|||+- ++.+.+.++|++.|.. +|+... T Consensus 6 ~~~~ILiVDD~~---~~~~~l~~~L~~~g~~~~v~~a~ 40 (143) T 2qvg_A 6 DKVDILYLEDDE---VDIQSVERVFHKISSLIKIEIAK 40 (143) T ss_dssp -CCSEEEECCCH---HHHHHHHHHHHHHCTTCCEEEES T ss_pred CCCEEEEEECCH---HHHHHHHHHHHHCCCCEEEEEEC T ss_conf 899899997999---99999999999769984999989 No 258 >1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Probab=23.16 E-value=29 Score=13.13 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=27.3 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 3389328974035333338889999985399789 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ev 388 (488) -.|.+|+=|++--|+|.|....+++||.++.... T Consensus 62 ~~GD~Il~VNg~~v~~~s~~~v~~~lr~~~~~~~ 95 (119) T 1x6d_A 62 QKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ 95 (119) T ss_dssp CTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSE T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE T ss_conf 8999999999998779979999999973899769 No 259 >2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 3gj9_A 2kg2_A 3dj3_A Probab=23.12 E-value=29 Score=13.12 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=18.8 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 38932897403533333888999998539978999965 Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) .|..|+-||+-=|.+.|...++++||.+.-..|.+.+. T Consensus 84 ~GD~Il~VNg~~v~~~t~~e~v~~l~~~~~~~v~l~v~ 121 (139) T 2vz5_A 84 IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT 121 (139) T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEE T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHHCCCCEEEEEEE T ss_conf 99999998998988999999999997489998999999 No 260 >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Probab=23.01 E-value=29 Score=13.11 Aligned_cols=86 Identities=15% Similarity=0.037 Sum_probs=52.2 Q ss_pred HHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHC Q ss_conf 47799999981996001001176532101106446777653201343245533893289740353333388899999853 Q gi|254780336|r 304 VPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA 383 (488) Q Consensus 304 ~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~a 383 (488) .-.|...|+.+|++.-+.-- ..+.+++=.-++|.. +.+.+..++||+|.++=..=+-..-...+++.|+++ T Consensus 490 ~~~~~~v~~~lg~~~p~~~~-~~~~~~~~~~~s~~~--------~~~~~~tl~grKVaILvadGfEe~E~~~~~~~L~~a 560 (715) T 1sy7_A 490 LGLAQTIAEMVGGEAPTTTN-HPNHGRKTINLSQTE--------FPPATPTIKSRRVAIIIADGYDNVAYDAAYAAISAN 560 (715) T ss_dssp HHHHHHHHHHHCSCCCSCCS-SCCCCCCCSSCSGGG--------CCCSSSCCTTCEEEEECCTTBCHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCHHH--------CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 99999999974999998777-899888897734000--------477663456767999816873489999999999977 Q ss_pred CCCEEEEEECCCCCC Q ss_conf 997899996589805 Q gi|254780336|r 384 GASEVHLRVASPMVL 398 (488) Q Consensus 384 Ga~evh~ri~sPpi~ 398 (488) |+.-+.+....-+|. T Consensus 561 G~~V~vV~~~~g~v~ 575 (715) T 1sy7_A 561 QAIPLVIGPRRSKVT 575 (715) T ss_dssp TCEEEEEESCSSCEE T ss_pred CCEEEEEECCCCCEE T ss_conf 996799856766377 No 261 >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Probab=22.68 E-value=29 Score=13.07 Aligned_cols=136 Identities=20% Similarity=0.246 Sum_probs=67.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HH-----HHHHC------------CCCEEHHEECCCC--CCCEE Q ss_conf 89999999999998748656772012001204779-99-----99981------------9960010011765--32101 Q gi|254780336|r 273 SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAA-IG-----YAKES------------GIPFEQGIIRNHY--VGRTF 332 (488) Q Consensus 273 ~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA-~g-----ya~~~------------gip~~~~lvkn~y--~gRtF 332 (488) .+..+-.+.-..|++..-+-.|+-+|.||-+..+- ++ |++-. |+|...|-...|. .||.- T Consensus 140 Eler~~r~f~~~L~~~~~~g~d~dvpapDvgt~~~~m~w~~d~y~~~~g~~~~~~~~~vTGKp~~~GGs~~r~~ATg~Gv 219 (501) T 3mw9_A 140 ELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGV 219 (501) T ss_dssp HHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH T ss_conf 99999999998763036426776755433330076545766531200476667877224688610278899732100478 Q ss_pred EECCHH-HHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHH Q ss_conf 106446-7776532013432455338932897403533333888999998539978999965898058865650058978 Q gi|254780336|r 333 IEPSHH-IRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPT 411 (488) Q Consensus 333 I~p~~~-~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~ 411 (488) ..-.++ .+..... +..-+...++||+|++-= =|+.-....+.|.+.|||=|-+--.+=-|..| -|+|++... T Consensus 220 ~~~~~~~~~~~~~~-~~~g~~~~l~g~tvaIQG----fGnVG~~~A~~L~~~GakvVavsD~~G~i~~~--~Gld~~~L~ 292 (501) T 3mw9_A 220 FHGIENFINEASYM-SILGMTPGFGDKTFVVQG----FGNVGLHSMRYLHRFGAKCITVGESDGSIWNP--DGIDPKELE 292 (501) T ss_dssp HHHHHHHHTCHHHH-HHTTCCSSSTTCEEEEEC----CSHHHHHHHHHHHHTTCEEEEEECSSCEEECT--TCCCHHHHH T ss_pred HHHHHHHHHHHHHH-HHCCCCCCCCCCEEEEEC----CCHHHHHHHHHHHHHCCCCEEEECCCCEEEEC--CCCCHHHHH T ss_conf 99999999986665-440567444685799968----87579999999997025653675378659836--532268999 Q ss_pred HHHH Q ss_conf 8854 Q gi|254780336|r 412 ALLA 415 (488) Q Consensus 412 eLia 415 (488) ++.. T Consensus 293 ~~~~ 296 (501) T 3mw9_A 293 DFKL 296 (501) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 262 >1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Probab=22.54 E-value=29 Score=13.05 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=24.0 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 33893289740353333388899999853997899 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh 389 (488) ++.+.|+++.+| |..+......|++.|-.-++ T Consensus 51 ~~~~~iv~~C~~---g~rs~~aa~~L~~~G~~~~~ 82 (94) T 1wv9_A 51 LPRRPLLLVCEK---GLLSQVAALYLEAEGYEAMS 82 (94) T ss_dssp CCSSCEEEECSS---SHHHHHHHHHHHHHTCCEEE T ss_pred HCCCCEEEECCC---CCCHHHHHHHHHHCCCCEEE T ss_conf 034443677799---82499999999986993999 No 263 >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Probab=22.54 E-value=29 Score=13.05 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=6.7 Q ss_pred HHHCCEEEEEEC Q ss_conf 011565999981 Q gi|254780336|r 11 INEKCGVFGILG 22 (488) Q Consensus 11 ~~~eCGI~Gi~~ 22 (488) |++-.||+...- T Consensus 1 Mk~l~Gi~~~~~ 12 (293) T 1f6k_A 1 MRDLKGIFSALL 12 (293) T ss_dssp CCCCCEEEEECC T ss_pred CCCCEEEEEEEE T ss_conf 998742346366 No 264 >3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A* Probab=22.45 E-value=29 Score=13.03 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9 Q ss_pred EHHHHHHHHHHHHHHHHHHCCC Q ss_conf 4035333338889999985399 Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa 385 (488) ++.|..|+|-+.+++++++.|- T Consensus 268 ~~~iLpGITR~svi~La~~~g~ 289 (372) T 3dth_A 268 SGSLLPGITRDSLLQLATDAGF 289 (372) T ss_dssp CSSSCCCHHHHHHHHHHHHHTC T ss_pred CCCCCCHHHHHHHHHHHHHCCE T ss_conf 2441541899999999998791 No 265 >2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} Probab=22.43 E-value=29 Score=13.03 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=65.2 Q ss_pred CCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEC Q ss_conf 32101106446777653201343245533893289740353333388899999853997899996589805886565005 Q gi|254780336|r 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDI 407 (488) Q Consensus 328 ~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~ 407 (488) .|.|+++-.++.++ | +++.+....+-++|+|---.. .+..+-|+++- |..+.|-|+.. T Consensus 3 ~~~~~m~~~~~I~~-----~---L~~~~~~~~l~V~D~S~~H~~-----------h~g~~~Hf~i~---IvS~~F~g~s~ 60 (107) T 2dhm_A 3 SGSSGMMIRERIEE-----K---LRAAFQPVFLEVVDESYRHNV-----------PAGSESHFKVV---LVSDRFTGERF 60 (107) T ss_dssp SSSCCCCHHHHHHH-----H---HHHHTCCSCCEEEECCCCCSS-----------CCCSCCCEEEE---EECGGGSSCCS T ss_pred CCCCCCCHHHHHHH-----H---HHHHCCCCEEEEEECCCCCCC-----------CCCCCCEEEEE---EEECCCCCCCH T ss_conf 86677789999999-----9---984189857999978776668-----------89997279999---98675368878 Q ss_pred CCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHH Q ss_conf 8978885466999889998709977888339899986 Q gi|254780336|r 408 PDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNA 444 (488) Q Consensus 408 p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~a 444 (488) -.|..+|-.- -.+||...|.|=++.-.+.+...+. T Consensus 61 i~rHR~V~~~--L~~ei~~~IHALsik~~T~~Ew~~~ 95 (107) T 2dhm_A 61 LNRHRMIYST--LAEELSTTVHALALHTYTIKEWEGL 95 (107) T ss_dssp SHHHHHHHHH--THHHHHTTCCCCEEEEECHHHHHTS T ss_pred HHHHHHHHHH--HHHHHCCCCCEEEEEECCHHHHHHC T ss_conf 9999999999--9999717975368783899999973 No 266 >2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* Probab=22.10 E-value=29 Score=13.07 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=36.7 Q ss_pred CCHHHHHHHHHHH---HHHHHHCCCCCC----CCCCCCCCHHHHHHHHHHHCCCCEEHHEE Q ss_conf 3728999999999---999874865677----20120012047799999981996001001 Q gi|254780336|r 270 SGRSIYVSRRNMG---KNLAKESPVIAD----IVVPIPDGGVPAAIGYAKESGIPFEQGII 323 (488) Q Consensus 270 ~g~~Vy~~R~~lG---~~La~~~~~~~D----iV~~VPdsg~~aA~gya~~~gip~~~~lv 323 (488) -|..+...|++.| +.||+...+... +--|...-+......+|+.+|++....+. T Consensus 13 lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~ia~~lgv~~~~~~~ 73 (88) T 2wiu_B 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA 73 (88) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC- T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEC T ss_conf 9999999999859999999786399899999998799999999999999996994086457 No 267 >1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Probab=21.90 E-value=30 Score=12.96 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=29.8 Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 33893289740353333388899999853997899996 Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488) Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488) -.|.+|+=|+.--+.|.+-..++++|+.+| .+|++.+ T Consensus 126 ~~Gd~il~iNg~~~~~~~~~~v~~ll~~~~-~~v~l~V 162 (166) T 1w9e_A 126 LTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITI 162 (166) T ss_dssp CSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEE T ss_pred CCCEEHHEECCEECCCCCHHHHHHHHHCCC-CEEEEEE T ss_conf 424001305894238999999999998699-8699999 No 268 >2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A* Probab=21.76 E-value=24 Score=13.66 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=5.7 Q ss_pred HHHHHHHHHHCC Q ss_conf 888999998539 Q gi|254780336|r 373 SVKIVQMIRSAG 384 (488) Q Consensus 373 ~k~iv~~lr~aG 384 (488) ++.++..+++.. T Consensus 111 l~~~~~~~~~~~ 122 (216) T 2q0q_A 111 MSVLVTQVLTSA 122 (216) T ss_dssp HHHHHHHHHTCT T ss_pred HHHHHHHHHHHC T ss_conf 999999999850 No 269 >3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Probab=21.74 E-value=30 Score=12.94 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=9.7 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCC Q ss_conf 932897403533333888999998539 Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAG 384 (488) Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aG 384 (488) |||++|||.-. ..+.+.++|...| T Consensus 4 krILiVDDd~~---~~~~l~~~L~~~g 27 (132) T 3crn_A 4 KRILIVDDDTA---ILDSTKQILEFEG 27 (132) T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT T ss_pred CEEEEEECCHH---HHHHHHHHHHHCC T ss_conf 88999959999---9999999999869 No 270 >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Probab=21.60 E-value=31 Score=12.92 Aligned_cols=29 Identities=14% Similarity=0.421 Sum_probs=15.9 Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 32897403533333888999998539978999 Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488) Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488) ||++|||+-.- .+.+.++|.+.|-++|.. T Consensus 8 rILiVDD~~~~---~~~l~~~L~~~g~~~v~~ 36 (129) T 1p6q_A 8 KVLIVDDQVTS---RLLLGDALQQLGFKQITA 36 (129) T ss_dssp CEEEECSSHHH---HHHHHHHHHTTTCSCEEC T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEE T ss_conf 89999598999---999999999879929999 No 271 >1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B* 1g20_B* 1fp4_B* 1g21_B* Probab=21.47 E-value=31 Score=12.90 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=50.9 Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC------------CEEEEC-CH---HHHHHHHHHCCCCCHHHHCCCCEEEE Q ss_conf 012047799999981996001001176532------------101106-44---67776532013432455338932897 Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG------------RTFIEP-SH---HIRAFGVKLKHSANRTILAGKRVVLI 363 (488) Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g------------RtFI~p-~~---~~R~~~v~~K~~~~~~~i~gk~vvlv 363 (488) |.++..+|.-+.+.-|+||... +..+| +.|=.| .+ ++|.+.+ -.+.-.+..+.||++.+. T Consensus 294 ~~~~~~~a~~le~~~g~p~~~~---~~P~Gi~~Td~fL~~Ia~~~G~~v~~~i~~er~rl~-d~~~d~~~~l~GKrvaI~ 369 (522) T 1m1n_B 294 PWHLEKTKKFVEGTWKHEVPKL---NIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLV-DMMTDSHTWLHGKRFALW 369 (522) T ss_dssp GGGCHHHHHHHHHTTCCCCCCC---CCSBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEC---CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHCCCEEEEE T ss_conf 8899999999999739853325---886687899999999999969975789999999999-999999998579879998 Q ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 403533333888999998539978999965898 Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488) Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488) -|. ...-.+.+.|++.|+.=+|+...... T Consensus 370 gd~----~~~~~l~~fL~ElG~~~~~v~~~~~~ 398 (522) T 1m1n_B 370 GDP----DFVMGLVKFLLELGCEPVHILCHNGN 398 (522) T ss_dssp CCH----HHHHHHHHHHHHTTCEEEEEEETTCC T ss_pred CCC----HHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 984----88999999999869961699957999 No 272 >2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens} Probab=21.28 E-value=20 Score=14.25 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=23.3 Q ss_pred HCCCCCCCCCCCH------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH Q ss_conf 0024743000372------8999999999999874865677201200120477 Q gi|254780336|r 260 VYFARPDSIISGR------SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPA 306 (488) Q Consensus 260 IYFarpdS~~~g~------~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~a 306 (488) +||++|+|.++++ .|.+.-.|-|..+.+-+.+-.-.....|+..-.+ T Consensus 295 ~~f~HPeA~YF~Vg~i~~dq~~dya~r~~~~~~~~~~~l~~~l~y~~~~~~~~ 347 (355) T 2o2k_A 295 LYFSNLKSKYFAVGKISKDQVEDYALRKNISVAEVEKWLGPILGYDTDKLAAA 347 (355) T ss_dssp EEBCCTTCCCCCCCCBCHHHHHHHHHHHTCCHHHHHHHTGGGBSCC------- T ss_pred EEEECCCCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH T ss_conf 88877877233057456899999999749999999998501217893055777 No 273 >1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=21.17 E-value=30 Score=12.95 Aligned_cols=35 Identities=11% Similarity=0.295 Sum_probs=25.2 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 53389328974035333338889999985399789 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ev 388 (488) +-.|.+|+-|++--|++-|...++++||.++--.+ T Consensus 53 L~~GD~Il~VNg~~v~~~~~~~~~~llk~~~~~~l 87 (101) T 1uez_A 53 LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVL 87 (101) T ss_dssp CCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE T ss_conf 98899999999999999989999999867997999 No 274 >1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Probab=21.13 E-value=31 Score=12.85 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=30.4 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC---EEEEEE Q ss_conf 533893289740353333388899999853997---899996 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS---EVHLRV 392 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~---evh~ri 392 (488) +-.|..|+=|++--|+|-|....+++||+++-+ ++++.+ T Consensus 60 L~~GD~Il~VNg~~v~~~s~~e~~~llk~~~~~~~~~v~~~~ 101 (109) T 1wi4_A 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 101 (109) T ss_dssp CCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 778999999999998899799999999877799886799998 No 275 >2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A Probab=21.05 E-value=31 Score=12.84 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 33333888999998539978999 Q gi|254780336|r 368 VRGTTSVKIVQMIRSAGASEVHL 390 (488) Q Consensus 368 VRGtT~k~iv~~lr~aGa~evh~ 390 (488) -|+||.-..+++.-..|.+|||+ T Consensus 146 ~~~Svg~~ai~lA~~mGfkeIyL 168 (288) T 2p2v_A 146 KRITSGVYMCAIAIALGYKTIYL 168 (288) T ss_dssp CCCCHHHHHHHHHHHHTCCEEEE T ss_pred CCCCHHHHHHHHHHHCCCCEEEE T ss_conf 67739999999999859988999 No 276 >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Probab=20.65 E-value=32 Score=12.79 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=12.3 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCC Q ss_conf 89328974035333338889999985399 Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488) Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488) +|+|++|||.-.- .+.+..+|+..|- T Consensus 2 ~krILiVDDd~~~---~~~l~~~L~~~g~ 27 (120) T 3f6p_A 2 DKKILVVDDEKPI---ADILEFNLRKEGY 27 (120) T ss_dssp CCEEEEECSCHHH---HHHHHHHHHHTTC T ss_pred CCCEEEEECCHHH---HHHHHHHHHHCCC T ss_conf 9719999399999---9999999998899 No 277 >1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1 Probab=20.42 E-value=31 Score=12.83 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.2 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999874865 Q gi|254780336|r 277 SRRNMGKNLAKESPV 291 (488) Q Consensus 277 ~R~~lG~~La~~~~~ 291 (488) +..++|+.|....++ T Consensus 16 F~~ky~eALG~~~~V 30 (99) T 1q60_A 16 FNEKCGEALGLKQAV 30 (99) T ss_dssp HHHHHHHHHTCSSCC T ss_pred HHHHHHHHHCCCCCC T ss_conf 999999983899850 No 278 >3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Probab=20.35 E-value=32 Score=12.74 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=26.9 Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 5338932897403533333888999998539978999965 Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488) Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488) +-.|.+|+-|++--|++-|...++.+|+++ .+.+.+. T Consensus 53 L~~GD~Il~INg~~v~~~~~~~~~~ll~~~---~~~Ltv~ 89 (94) T 3kzd_A 53 LKAGDEILEINNRAADALNSSMLKDFLSQP---SLGLLVR 89 (94) T ss_dssp CCTTCEEEEETTEEGGGCCHHHHHHHHHSS---EEEEEEE T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCC---CCEEEEE T ss_conf 847899999999998999999999998669---9779999 Done!