RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (488 letters) >gnl|CDD|181660 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional. Length = 479 Score = 890 bits (2301), Expect = 0.0 Identities = 314/477 (65%), Positives = 379/477 (79%), Gaps = 5/477 (1%) Query: 1 MCSKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERH 60 + + E+CGVFGILGHPDAA LTA+GLHALQHRGQEA GI+SF+G +FHSER Sbjct: 8 FPDDDLDDDTLREECGVFGILGHPDAAALTALGLHALQHRGQEAAGIVSFDGERFHSERR 67 Query: 61 LGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT 120 +GLVGDHFT + ++ LPGN AIGHVRYSTTG+ I+RNVQPLFA+L+ GG+AIAHNGN T Sbjct: 68 MGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLT 127 Query: 121 NGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT 180 N LTLR++LI GAIFQSTSDTEVILHLIARS+K DRFID+LR V+GAY+++ALT T Sbjct: 128 NALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTNT 187 Query: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFIS 240 KLI RDP+GIRPL++GEL G PI SETCAL+I GA+++RDVE GE +V + EDG S Sbjct: 188 KLIGARDPLGIRPLVLGELDGSPILASETCALDIIGAEFVRDVEPGELVV--IDEDG--S 243 Query: 241 IDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIP 300 I+S K P R CIFEYVYFARPDS++ GRS+Y R+N+G+ LA+ESPV AD+VVP+P Sbjct: 244 IESIKPFPPQPARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDADVVVPVP 303 Query: 301 DGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 D GVPAAIGYA+ESGIPFE GIIRNHYVGRTFI+P+ IR GVKLKH+ANR ++ GKRV Sbjct: 304 DSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRV 363 Query: 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSS 420 VL+DDSIVRGTTS KIVQM+R AGA EVHLR+ASP + +P FYGID P+ + LLA S Sbjct: 364 VLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATH-S 422 Query: 421 PQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQH 477 +EM +IG DSL FLS+DGLY A+ R+P P + D CFTGDYPT L D++ + Sbjct: 423 LEEMAEYIGADSLAFLSIDGLYRAVGEEGRNPAAPQYCDACFTGDYPTGLTDQEGES 479 >gnl|CDD|162218 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase. Length = 442 Score = 588 bits (1517), Expect = e-168 Identities = 224/456 (49%), Positives = 301/456 (66%), Gaps = 17/456 (3%) Query: 15 CGVFGILGH-PDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73 CGV GI DAA+LT GL+ALQHRGQEA GI +GNK + + GLV D F Sbjct: 1 CGVVGIYSQEEDAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVF-DERH 59 Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133 L L GN+ IGHVRYST G + N QP + GGIA+AHNGN N LR++L G Sbjct: 60 LERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSP-GGIALAHNGNLVNAEELREELEEEG 118 Query: 134 AIFQSTSDTEVILHLIAR--SQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGI 191 IF +TSD+EV+LHL+AR +++ + L+ V+GAYA++ + LIA RDP GI Sbjct: 119 RIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMIGDGLIAVRDPHGI 178 Query: 192 RPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSP 251 RPL++G+ + SE+CAL+I GA++IRDVE GE +V + + G + + +P Sbjct: 179 RPLVLGKRGDGYVVASESCALDILGAEFIRDVEPGEAVV--IDDGGL----ESRLFANTP 232 Query: 252 ERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYA 311 CIFEYVYFARPDS+I G S+Y +R+ MG+ LA+ESPV AD+V+P+PD G AA+G+A Sbjct: 233 RAPCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSGRSAALGFA 292 Query: 312 KESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 + SGIP+ +G+I+N YVGRTFI P+ +R V+LK + R + GKRVVL+DDSIVRGT Sbjct: 293 QASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGT 352 Query: 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVD 431 TS +IV+M+R AGA EVH+R+ASP + YP +YGID+P L+AN + +E+ IG D Sbjct: 353 TSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG-RTVEEIAKEIGAD 411 Query: 432 SLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467 SL +LS++GL AI + CFTG+YP Sbjct: 412 SLAYLSLEGLKEAI-----GKKISDLCLACFTGEYP 442 >gnl|CDD|180913 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional. Length = 484 Score = 559 bits (1442), Expect = e-160 Identities = 227/468 (48%), Positives = 308/468 (65%), Gaps = 8/468 (1%) Query: 6 NNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVG 65 K +NE+CGVFGI GHPDAA LT GLH+LQHRGQE GI+S + K R LGL+ Sbjct: 3 YEVKSLNEECGVFGIWGHPDAAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLS 62 Query: 66 DHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTL 125 + F P L L G AIGHVRY+T G I N+QP +AHNGN TN ++L Sbjct: 63 EVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSL 122 Query: 126 RKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIAT 185 RK+L GAIF S+SDTE+++HLI RS + ++L V+G +A L LT KLIA Sbjct: 123 RKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTEDKLIAA 182 Query: 186 RDPIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSY 244 DP G RPL +G++ +G + SETCA ++ GA+++RDV+ GE ++ + ++G I DSY Sbjct: 183 LDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVI--IDDEG-IQYDSY 239 Query: 245 KNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGV 304 + +C EY+YFARPDS I G +++ +R+ MGK LA+E P ADIV+ +P+ + Sbjct: 240 TTDTQLA--ICSMEYIYFARPDSTIHGVNVHTARKRMGKRLAQEFPHDADIVIGVPNSSL 297 Query: 305 PAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLID 364 AA GYA+ESG+P+E G+++N YV RTFI+P+ +R GV++K SA ++ GKRVV++D Sbjct: 298 SAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVD 357 Query: 365 DSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEM 424 DSIVRGTTS +IVQ+++ AGA EVH+ +ASP + YP FYGIDI L++ S +E+ Sbjct: 358 DSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISAN-HSVEEI 416 Query: 425 CNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 C+ IG DSL +LSVDGL +I G+ D N F GDYPTPL D Sbjct: 417 CDIIGADSLTYLSVDGLIESI-GLDTDAPNGGLCVAYFDGDYPTPLYD 463 >gnl|CDD|178059 PLN02440, PLN02440, amidophosphoribosyltransferase. Length = 479 Score = 547 bits (1411), Expect = e-156 Identities = 232/459 (50%), Positives = 311/459 (67%), Gaps = 12/459 (2%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CGV GI G P+A+ L +GLHALQHRGQE GI++ +GN+ S GLV D F + + L Sbjct: 2 CGVVGIFGDPEASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESK-L 60 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134 LPG++AIGHVRYST G ++NVQP A+ + G I +AHNGN N LR KL +G+ Sbjct: 61 DQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGS 120 Query: 135 IFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPL 194 IF ++SDTEV+LHLIA S+ R +D+ ++GAY+M+ LT KL+A RDP G RPL Sbjct: 121 IFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTEDKLVAVRDPHGFRPL 180 Query: 195 IMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPER 253 +MG +G +F SETCAL++ GA Y R+V GE IV + +D +S P P + Sbjct: 181 VMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIV--VDKDKGVS-SQCLMPHPEP-K 236 Query: 254 MCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKE 313 CIFE++YFARP+SI+ GRS+Y SR G+ LA E PV D+V+P+PD G AA+GYA + Sbjct: 237 PCIFEHIYFARPNSIVFGRSVYESRLEFGEILATEIPVDCDVVIPVPDSGRVAALGYAAK 296 Query: 314 SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTS 373 G+PF+QG+IR+HYVGRTFIEPS IR F VKLK + R++L GKRVV++DDSIVRGTTS Sbjct: 297 LGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTS 356 Query: 374 VKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433 KIV+M+R AGA EVH+R+ASP ++ +YG+D P L++N+ S +E+ FIG DSL Sbjct: 357 SKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSV-EEIRKFIGCDSL 415 Query: 434 GFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 FL ++ L ++ ++P F CF+GDYP Sbjct: 416 AFLPLEDLKKSL-----GEESPRFCYACFSGDYPVLPKR 449 >gnl|CDD|180262 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional. Length = 469 Score = 544 bits (1404), Expect = e-155 Identities = 229/457 (50%), Positives = 302/457 (66%), Gaps = 15/457 (3%) Query: 13 EKCGVFGI--LGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 E+CGVFG+ + D A+LT GL+ALQHRGQE+ GI +G K + +GLV + F+K Sbjct: 13 EECGVFGVFSKNNIDVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSK 72 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130 E L L GN AIGHVRYSTTG + N QPL A+ ++G IAIAHNGN N +R+ L Sbjct: 73 -EKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLE 131 Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIG 190 G IFQ++ D+EVIL+LIARS K G +D+++ ++G+YA++ LT KLI RDP G Sbjct: 132 DGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTEDKLIGVRDPHG 191 Query: 191 IRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTS 250 IRPL +G+L I SE+CAL+ GA++IRDVE GE ++ + EDG SI + Sbjct: 192 IRPLCLGKLGDDYILSSESCALDTIGAEFIRDVEPGEIVI--IDEDGIKSIKFAEKTKCQ 249 Query: 251 PERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGY 310 C FEY+YFARPDS+I G S+Y SR G+ L KE PV ADIV+ +PD G+PAAIGY Sbjct: 250 T---CAFEYIYFARPDSVIDGISVYESRVRAGRQLYKEYPVDADIVIGVPDSGIPAAIGY 306 Query: 311 AKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRG 370 A+ SGIP+ G I+N YVGRTFI PS +R V++K + + + GKRVVLIDDSIVRG Sbjct: 307 AEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRG 366 Query: 371 TTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGV 430 TTS ++V+++R AGA EVH RV+SP V YP ++GID P L+ S +E+ IG Sbjct: 367 TTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIGAN-MSVEEIREMIGA 425 Query: 431 DSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467 DSLG+LS++GL ++ G + F CF G YP Sbjct: 426 DSLGYLSIEGLLESLNG------DKGFCLGCFNGVYP 456 >gnl|CDD|181456 PRK08525, PRK08525, amidophosphoribosyltransferase; Provisional. Length = 445 Score = 540 bits (1394), Expect = e-154 Identities = 230/459 (50%), Positives = 304/459 (66%), Gaps = 17/459 (3%) Query: 14 KCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73 C V G++ +AA L L A+QHRGQEA+GI NG K + + GLV F + + Sbjct: 1 MCAVVGVINSKNAAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNE-DN 59 Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133 L L G +AIGH RYST G+ I + QP+FA +G IAI HNGN N +R +LI G Sbjct: 60 LKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDG 119 Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193 AIFQ+ DTE ++HLIARS+K DR I++L+ + GAY ++ L+R+K+ A RDP G+RP Sbjct: 120 AIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIGAYCLVLLSRSKMFAIRDPHGVRP 179 Query: 194 LIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSY-KNPSTSP 251 L +G L G I SETCA ++ GA++IRDV+ GE ++ E D F SI + P Sbjct: 180 LSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPTP---- 235 Query: 252 ERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYA 311 R+C FEY+YFARPDSI+ G+++Y R+ MG+ LAK+ P+ AD VVP+PD GVPAAIGYA Sbjct: 236 -RICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFPIKADFVVPVPDSGVPAAIGYA 294 Query: 312 KESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 +ESGIPFE I+RNHYVGRTFIEP+ +R VKLK + +L GKR+V+IDDSIVRGT Sbjct: 295 QESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGT 354 Query: 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALL-ANKCSSPQEMCNFIGV 430 TS KIV ++R+AGA E+HLR+A P + +P +YGID P L+ ANK S +E+ +IG Sbjct: 355 TSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELISANK--SVEEVRKYIGA 412 Query: 431 DSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTP 469 DSL FLS+D L +I D + + A F GDY Sbjct: 413 DSLSFLSIDELTRSI----GDERKYSLA--SFDGDYFIK 445 >gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional. Length = 475 Score = 487 bits (1255), Expect = e-138 Identities = 221/462 (47%), Positives = 302/462 (65%), Gaps = 8/462 (1%) Query: 9 KQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHF 68 K +NE+CGVFGI GH +AA +T GLH+LQHRGQE GI+ +G K + + LGLV + F Sbjct: 6 KGLNEECGVFGIWGHEEAAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVF 65 Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128 + L L G AIGHVRY+T G NVQPL Q G +A+AHNGN N L+ + Sbjct: 66 -QNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQ 124 Query: 129 LISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDP 188 L + G+IFQ+TSDTEV+ HLI RS ++ ++L ++GAYA L +T T+L DP Sbjct: 125 LENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTETELYVALDP 184 Query: 189 IGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 G+RPL +G L + SETCA ++ GA Y R+VE GE ++ + ++G + S + Sbjct: 185 NGLRPLSIGRLGDAYVVASETCAFDVIGATYEREVEPGELLI--INDEG---MRSERFAP 239 Query: 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAI 308 +C EY+YFARPDS + G +++ +R+N+GK LA E+PV AD+V +PD + AAI Sbjct: 240 NQNRSICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEADVVTGVPDSSISAAI 299 Query: 309 GYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIV 368 GYA+ +GIP+E G+I+N YVGRTFI+PS +R GVK+K S R ++ GKRVV++DDSIV Sbjct: 300 GYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIV 359 Query: 369 RGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFI 428 RGTTS +IV M+R AGA+EVH+R++SP + +P FYGID L+A+ S +E+ I Sbjct: 360 RGTTSRRIVTMLREAGATEVHVRISSPPITHPCFYGIDTSTKEELIASN-HSVEEIRQLI 418 Query: 429 GVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPL 470 G DSL FLS +GL I G P + N CFTG YPT + Sbjct: 419 GADSLAFLSQEGLLEGI-GRPYESPNCGQCLACFTGQYPTEI 459 >gnl|CDD|180940 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional. Length = 500 Score = 476 bits (1226), Expect = e-135 Identities = 212/468 (45%), Positives = 308/468 (65%), Gaps = 19/468 (4%) Query: 13 EKCGVFGIL-GHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKP 71 E CGVFG+ + A LT GL+ALQHRGQE+ GI +F G+K H + +GLV F Sbjct: 32 EACGVFGVYAPGEEVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVF-DE 90 Query: 72 ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131 + L LPG++A+GH RYSTTG N QP + ++G +A+AHNGN N + LR++L++ Sbjct: 91 DILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLA 150 Query: 132 SGAIFQSTSDTEVILHLIARSQKNGS--CDRFIDSLRHVQGAYAMLALTRTKLIATRDPI 189 G +T+D+E+I IA++ G + I + + QGA++++ T L+ RDP Sbjct: 151 RGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTPEGLMGVRDPN 210 Query: 190 GIRPLIMGELH----GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245 GIRPL++G L G+ + SETCAL+I GA+Y+RDVE GE + + E G + S+ Sbjct: 211 GIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVW--ITEGG---LSSFH 265 Query: 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP 305 ++CIFE +YFARPDS + G S+Y R+ +G+ LAKESPV AD+V+ +PD G+P Sbjct: 266 WAQEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDSGIP 325 Query: 306 AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDD 365 AAIG+++ SGIP+ +G+I+N YVGRTFI+P+ +R G+++K + + +LAGKR++++DD Sbjct: 326 AAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDD 385 Query: 366 SIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425 SIVRGTTS KIV+ +R AGA+EVH+R++SP V +P FYGID L+A S +E+ Sbjct: 386 SIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPCFYGIDTDTQDQLIAAT-KSVEEIA 444 Query: 426 NFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDK 473 IGVDSL +LS +G+ A DP + F CFTGDYP P+ ++ Sbjct: 445 EQIGVDSLAYLSWEGMLEA---TGEDPNS--FCSACFTGDYPIPIPEQ 487 >gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional. Length = 471 Score = 469 bits (1208), Expect = e-133 Identities = 231/469 (49%), Positives = 315/469 (67%), Gaps = 8/469 (1%) Query: 9 KQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHF 68 K +NE+CGVFGI GH +AA ++ GLH+LQHRGQE GI+ NG K + LGL+ + F Sbjct: 6 KGLNEECGVFGIWGHENAAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVF 65 Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128 ++ E L L G AIGHVRY+T G + NVQPL +A+AHNGN N LR++ Sbjct: 66 SRGE-LEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRE 124 Query: 129 LISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDP 188 L + G+IFQ++SDTEV+LHLI RS K+ + ++L V+GA+A L LT ++I DP Sbjct: 125 LEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTGNEMIVALDP 184 Query: 189 IGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 G RPL +G++ + SETCA ++ GA YIRDVE GE ++ + ++G I +D + N Sbjct: 185 NGFRPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLI--INDEG-IHVDRFTN-- 239 Query: 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAI 308 +C EY+YFARPDS I+G +++ +R+NMGK LA E+P+ AD+V +PD + AAI Sbjct: 240 EVDHAICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAI 299 Query: 309 GYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIV 368 GYA+ +GIP+E G+I+N YVGRTFI+PS +R GVK+K SA R ++ GKRVV+IDDSIV Sbjct: 300 GYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIV 359 Query: 369 RGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFI 428 RGTTS +IV+M+R AGA+EVH+R+ASP + YP FYGIDI L+A + +E+ I Sbjct: 360 RGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAAN-HTVEEIREMI 418 Query: 429 GVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQH 477 G DSL FLS DGL +AI G P + + F GDYPT L D + + Sbjct: 419 GADSLTFLSEDGLVDAI-GRPYEGKYGGLCMAYFNGDYPTALYDYEQEL 466 >gnl|CDD|181143 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional. Length = 510 Score = 457 bits (1178), Expect = e-129 Identities = 205/469 (43%), Positives = 293/469 (62%), Gaps = 23/469 (4%) Query: 13 EKCGVFGILGHP--DAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 ++CGVFG+ P + A LT GL+ALQHRGQEA GI +G++ + LGLV F + Sbjct: 22 DECGVFGVWA-PGEEVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDE 80 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGG-IAIAHNGNFTNGLTLRKKL 129 TL+ L G++AIGH RYSTTG N QP F GG +A+ HNGN N L + Sbjct: 81 Q-TLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARA 139 Query: 130 ISSGAIFQ-----STSDTEVILHLIARSQKNGSC-DRFIDSLRHVQGAYAMLALTRTKLI 183 G I +T+DT+++ L+A + + ++ L V+GA+ ++ + L Sbjct: 140 RDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDEHTLY 199 Query: 184 ATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDS 243 A RDP G+RPL++G L + SET AL+I GA ++R++E GE I + DG + S Sbjct: 200 AARDPQGVRPLVLGRLERGWVVASETAALDIVGASFVREIEPGELIA--IDADG---LRS 254 Query: 244 YKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGG 303 + +P + C+FEYVY ARPD+ I+GRS++ +R +G+ LA+E PV AD+V+P+P+ G Sbjct: 255 TRFAEPTP-KGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 Query: 304 VPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLI 363 PAA+GYA+ESGIPF QG+++N YVGRTFI+PS IR G++LK + R ++ GKR+V++ Sbjct: 314 TPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVV 373 Query: 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQE 423 DDSIVRG T +V+M+R AGA+EVH+R++SP V +P FYGID L+AN + +E Sbjct: 374 DDSIVRGNTQRALVRMLREAGAAEVHVRISSPPVKWPCFYGIDFASRAELIANGL-TVEE 432 Query: 424 MCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 + IG DSLG++S+DG+ A P A CF G YP L D Sbjct: 433 IRRSIGADSLGYISLDGMIAA-TEQPASRLCTA----CFDGVYPIELPD 476 >gnl|CDD|181724 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional. Length = 501 Score = 383 bits (987), Expect = e-107 Identities = 200/491 (40%), Positives = 275/491 (56%), Gaps = 55/491 (11%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CG+ GI+GH L LQHRGQ+A GI++ +GN+F + GLV D F + Sbjct: 2 CGIVGIVGHSPVNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFR-TRHM 60 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVG---GIAIAHNGNFTNGLTLRKKLIS 131 L GNM IGHVRY T G QP + V GI +AHNGN TN LRK+L Sbjct: 61 RRLQGNMGIGHVRYPTAGSSSSAEAQPFY----VNSPYGITLAHNGNLTNAEELRKEL-- 114 Query: 132 SGAIFQ-------STSDTEVILHLIARS-QKNGSCDRFIDSL--------RHVQGAYAML 175 F+ +TSD+EV+L++ A QK + + R V+GAYA++ Sbjct: 115 ----FEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVV 170 Query: 176 AL-TRTKLIATRDPIGIRPLIMGELH--GKP--IFCSETCALEITGAKYIRDVENGETIV 230 A+ L+A RDP GIRPL++G+ G + SE+ AL+ G +++RDV GE I Sbjct: 171 AMIIGHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIY 230 Query: 231 CELQEDG-FISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLA--- 286 + EDG + +NP +P CIFEYVYFARPDSII G S+Y +R MG+ LA Sbjct: 231 --ITEDGQLHTRQCAENPKLNP---CIFEYVYFARPDSIIDGISVYKARLRMGEKLAEKI 285 Query: 287 -KESP-VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV 344 +E P + D+V+PIPD AA+ A+ G+P+ +G ++N YVGRTFI P R V Sbjct: 286 KREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSV 345 Query: 345 KLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYG 404 + K +A R GK V+L+DDSIVRGTTS +IVQM R AGA +V+ A+P V +P+ YG Sbjct: 346 RQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPNVYG 405 Query: 405 IDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPA---FADHC 461 ID+P L+A+ + +E+ IG D L + ++ L A+ R+ NP F C Sbjct: 406 IDMPTANELIAHG-RTVEEIRQIIGADGLIYQDLEDLIEAV----RE-GNPDIKQFECSC 459 Query: 462 FTGDYPTPLVD 472 F G+Y T +D Sbjct: 460 FDGEYVTGDID 470 >gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional. Length = 474 Score = 379 bits (975), Expect = e-106 Identities = 194/462 (41%), Positives = 279/462 (60%), Gaps = 14/462 (3%) Query: 7 NYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGD 66 ++ +E C V G G +A + L LQHRGQE+ G+ F+G K H ++ +GLV D Sbjct: 12 TGQKPSEDCAVVGFKGGINAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTD 71 Query: 67 HFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLR 126 F P T + G + +GH RYST G + + N P + +G I I+HNG N LR Sbjct: 72 VF-NPATDPI-KGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELR 129 Query: 127 KKLISSGAIFQSTSDTEVILHLIARS-QKNGSCDRFIDSLRHVQGAYAMLALTRTKLIAT 185 +++ G IFQS SDTEV+L ++R+ K G + F S+ ++GAYA + +L A Sbjct: 130 EEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMINDRLYAI 189 Query: 186 RDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245 RDP GIRPL++G+ I SE+CA++ I++VE GE V E+ ++G+ +I Sbjct: 190 RDPNGIRPLVLGKNFDGYIIASESCAIDALSGTTIKNVEPGE--VVEVFDNGYKTIFKLD 247 Query: 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP 305 + C+FEYVYF+RPDSII G ++Y +R MG LAKESPV AD+VVP+PD G Sbjct: 248 GDKVA---HCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSGRS 304 Query: 306 AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDD 365 AIG++ SGIP+ +G+I+N Y RTFI P+ R +KLK + R +++GKR+VL+DD Sbjct: 305 QAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDD 364 Query: 366 SIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425 SIVRG T IV+++R GA EVH+R+ SP ++ P ++G+D+ +A + + +E+ Sbjct: 365 SIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPCYFGVDMKTKDQFIA-RGKTDEEIN 423 Query: 426 NFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467 N IG DSL FLS+DGL AI GI + C TG YP Sbjct: 424 NEIGADSLAFLSIDGLKQAI-GI----KENNLCLGCLTGIYP 460 >gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional. Length = 442 Score = 370 bits (952), Expect = e-103 Identities = 210/462 (45%), Positives = 278/462 (60%), Gaps = 31/462 (6%) Query: 11 INEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 + EKCG+F +A L ALQHRGQE GI S ++ + + GLV + F K Sbjct: 1 MREKCGIFAAYSE-NAPKKAYYALIALQHRGQEGAGI-SVWRHRIRTVKGHGLVSEVF-K 57 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130 +LS L N+AIGHVRYST+G + VQPL + IAIAHNG TN L LR+K Sbjct: 58 GGSLSRLKSNLAIGHVRYSTSGS--LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYE 115 Query: 131 SSGAIFQSTSDTEVI-LHLIARSQKNGSCDRFIDSLR----HVQGAYAMLALTRTKLIAT 185 S G F+S+ DTE+I + + + G D F +++R V+GAY++ L K+I Sbjct: 116 SRGVKFRSSVDTELIGISFLWHYSETG--DEF-EAMREVFNEVKGAYSVAILFDGKIIVA 172 Query: 186 RDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245 RDP+G RPL GE G F SE AL + + IRDV GE V + E S K Sbjct: 173 RDPVGFRPLSYGEGDGH-YFASEDSALRMFVNE-IRDVFPGEVFV--VSEGEVES----K 224 Query: 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP 305 + C+FEY+YFARPDS+I G S+Y +R MG LA+ESP D+V+ +PD G Sbjct: 225 VLAREKHHHCVFEYIYFARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGRT 284 Query: 306 AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDD 365 AA+G+A ESGIP+ +G+I+N Y+GRTFI PS R VKLK S R ++ GKRVVL+DD Sbjct: 285 AALGFAHESGIPYMEGLIKNRYIGRTFIMPSG--RELKVKLKLSPVREVINGKRVVLVDD 342 Query: 366 SIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425 SIVRGTT +IV+M+R AGA EVH+R+ASP + YP + GIDIP L+A S +++ Sbjct: 343 SIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPCYMGIDIPTRHELIA-AWGSVEDIR 401 Query: 426 NFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467 IG DSL +LSV+GL A+ G ++ A C TG+YP Sbjct: 402 KEIGADSLAYLSVEGLKRAV-GT----EDLCMA--CLTGEYP 436 >gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein. Length = 607 Score = 101 bits (255), Expect = 3e-22 Identities = 73/234 (31%), Positives = 109/234 (46%), Gaps = 24/234 (10%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CG+ G +G DA + GL L++RG ++ GI + K + +G V + Sbjct: 1 CGIVGYIGQRDAVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQE-LANKLGE 59 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134 LPG + IGH R++T G N P + G IA+ HNG N LR++L + G Sbjct: 60 KPLPGGVGIGHTRWATHGKPTEENAHPHTD--EGGRIAVVHNGIIENYAELREELEARGH 117 Query: 135 IFQSTSDTEVILHLIARSQKNGSCDRFIDS----LRHVQGAYAMLALT---RTKLIATRD 187 +F S +DTEVI HLI + G +++ L+ ++GAYA+ L L+A R Sbjct: 118 VFVSDTDTEVIAHLIEEYLREG--GDLLEAVQKALKQLRGAYALAVLHADHPETLVAARS 175 Query: 188 PIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGETIVCELQEDGF 238 PLI+G G+ S+ AL R V E+G+ + L DG Sbjct: 176 G---SPLIVGLGDGENFVASDVTAL----LPVTRRVIYLEDGDIAI--LTRDGV 220 >gnl|CDD|178980 PRK00331, PRK00331, glucosamine--fructose-6-phosphate aminotransferase; Reviewed. Length = 604 Score = 92.0 bits (230), Expect = 3e-19 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 32/238 (13%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CG+ G +G +AA + GL L++RG ++ GI + + +G V + Sbjct: 2 CGIVGYVGQRNAAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKV-ANLEAKLEE 60 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNG---NFTNGLTLRKKLIS 131 LPG IGH R++T G RN P G IA+ HNG N+ L+++L++ Sbjct: 61 EPLPGTTGIGHTRWATHGKPTERNAHPHTD--CSGRIAVVHNGIIENY---AELKEELLA 115 Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSC--DRFIDSLRHVQGAYAMLALTRTKLIATRDP- 188 G +F+S +DTEVI HLI K G + +L+ ++GAYA+ + + +P Sbjct: 116 KGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDK------DEPD 169 Query: 189 --IGIR---PLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGETIVCELQEDGF 238 + R PL++G G+ S+ AL Y R V E+GE + L DG Sbjct: 170 TIVAARNGSPLVIGLGEGENFLASDALAL----LPYTRRVIYLEDGE--IAVLTRDGV 221 >gnl|CDD|162406 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. Length = 467 Score = 81.6 bits (202), Expect = 4e-16 Identities = 58/253 (22%), Positives = 86/253 (33%), Gaps = 54/253 (21%) Query: 17 VFGILGHPDAATLTAIGLHALQ----HRGQEATGIISFNGNKFHSERHLGLVGDHFTKPE 72 + G D A + + HRG +A+GI +GN Sbjct: 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNA------------------ 42 Query: 73 TLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISS 132 +GH R + + QP+ + I NG N LR++L + Sbjct: 43 ---------ILGHRRLAIID--LSGGAQPMSNE--GKTYVIVFNGEIYNHEELREELEAK 89 Query: 133 GAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIR 192 G FQ+ SDTEVILHL ++ G + +D L + A+A+ + +L RD GI+ Sbjct: 90 GYTFQTDSDTEVILHLY---EEWG--EECVDRLDGMF-AFALWDSKKGELFLARDRFGIK 143 Query: 193 PLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPE 252 PL G+ F SE AL I + P Sbjct: 144 PLYYAYDGGQLYFASEIKALLAH----------PRNIKPFPDGAALAPGFGFV---RVPP 190 Query: 253 RMCIFEYVYFARP 265 F V+ P Sbjct: 191 PSTFFRGVFELEP 203 >gnl|CDD|181851 PRK09431, asnB, asparagine synthetase B; Provisional. Length = 554 Score = 77.6 bits (192), Expect = 7e-15 Identities = 68/211 (32%), Positives = 84/211 (39%), Gaps = 58/211 (27%) Query: 15 CGVFGILGHP-DAATLTAIGLHALQ---HRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 CG+FGIL DA L L + HRG + +GI D Sbjct: 2 CGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGI---------------YASD---- 42 Query: 71 PETLSLLPGNMAIGHVRYS----TTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLR 126 N +GH R S G Q PL+ + G +A NG N LR Sbjct: 43 ---------NAILGHERLSIVDVNGGAQ------PLYN--EDGTHVLAVNGEIYNHQELR 85 Query: 127 KKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTK---LI 183 +L A FQ+ SD EVIL L Q+ G F+D L G +A AL ++ + Sbjct: 86 AELGDKYA-FQTGSDCEVILALY---QEKGP--DFLDDL---DGMFAF-ALYDSEKDAYL 135 Query: 184 ATRDPIGIRPLIMGE-LHGKPIFCSETCALE 213 RDPIGI PL G HG F SE AL Sbjct: 136 IARDPIGIIPLYYGYDEHGNLYFASEMKALV 166 >gnl|CDD|185544 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate aminotransferase; Provisional. Length = 640 Score = 74.7 bits (184), Expect = 5e-14 Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 38/265 (14%) Query: 3 SKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGN------KFH 56 + + CG+ G LG+ DA+ + G+ LQ+RG ++ GI + + K+ Sbjct: 13 CFIKKSRFYDYCCGIVGYLGNEDASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYA 72 Query: 57 SERHLGLVGDHFTKPETLSL---LPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAI 113 S+ G D + L + I H R++T G + N P D + IA+ Sbjct: 73 SD---GTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENAHPHC-DYK-KRIAL 127 Query: 114 AHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHV----Q 169 HNG N + L+ +LI+ G F+S +D+EVI +LI G + F ++++ Q Sbjct: 128 VHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQG--EDFQEAVKSAISRLQ 185 Query: 170 GAYAMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRD---V 223 G + + + + LI R+ PL++G SE A AKY + + Sbjct: 186 GTWGLCIIHKDNPDSLIVARNG---SPLLVGIGDDSIYVASEPSAF----AKYTNEYISL 238 Query: 224 ENGETIVCELQEDGFISIDSYKNPS 248 ++GE + EL + ++ Sbjct: 239 KDGE--IAELSLEN---VNDLYTQR 258 >gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. Length = 628 Score = 65.5 bits (160), Expect = 3e-11 Identities = 60/209 (28%), Positives = 83/209 (39%), Gaps = 55/209 (26%) Query: 15 CGVFGILG-----HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFT 69 CG+ GI D L + A HRG + G+ H E +GL Sbjct: 2 CGITGIFDLTGQRPIDRDLLRRMN-DAQAHRGPDGGGV--------HVEPGIGL------ 46 Query: 70 KPETLSLLPGNMAIGHVRYSTTGDQIIR---NVQPLFADLQVGGIAIAHNGNFTNGLTLR 126 GH R S II QPLF + G + + NG N L Sbjct: 47 --------------GHRRLS-----IIDLSGGQQPLFNE--DGSVVVVFNGEIYNFQELV 85 Query: 127 KKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG--AYAMLALTRTKLIA 184 +L + G +F++ SDTEVI+H A + +C + +G A+A+ + L Sbjct: 86 AELQALGHVFRTRSDTEVIVH--AWEEWGEAC------VERFRGMFAFALWDRNQETLFL 137 Query: 185 TRDPIGIRPLIMGEL-HGKPIFCSETCAL 212 RD +GI+PL L G IF SE AL Sbjct: 138 ARDRLGIKPLYYALLADGWFIFGSELKAL 166 >gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional. Length = 586 Score = 65.5 bits (160), Expect = 3e-11 Identities = 53/205 (25%), Positives = 77/205 (37%), Gaps = 41/205 (20%) Query: 15 CG---VFGILGHPDAATLTAIGLHA-LQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 CG +F G A+ L L+HRG + +GII + + Sbjct: 2 CGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLE-----NSPGT----YNILA 52 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130 E L+++ +++ G QPL D + +A+ NG N +R +L Sbjct: 53 HERLAIV--DLSDGK--------------QPLLDDDET--VALMQNGEIYNHWEIRPELE 94 Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTK--LIATRDP 188 G F S SD E+I HL + H+ G +A + A RD Sbjct: 95 KEGYKFSSNSDCEIIGHLYKEYGPKDFWN-------HLDGMFATVIYDMKTNTFFAARDH 147 Query: 189 IGIRPLIMG-ELHGKPIFCSETCAL 212 IGI PL +G G F SE AL Sbjct: 148 IGIIPLYIGYAKDGSIWFSSELKAL 172 >gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate aminotransferase; Provisional. Length = 670 Score = 62.6 bits (152), Expect = 2e-10 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 43/230 (18%) Query: 15 CGVFGILGHPDAATLTAI------GLHALQHRGQEATGIISFNGNKFHSE---------- 58 CG+FG H T+ I G+ +++RG ++ G+ E Sbjct: 2 CGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTP 61 Query: 59 -----RHLGLVGDH----FTKPETLSLLPGN------MAIGHVRYSTTGDQIIRNVQPLF 103 R +G + F++ +L P + + I H R++T G RN P Sbjct: 62 RPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQ 121 Query: 104 ADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVIL----HLIARSQKNGSCD 159 ++ G I HNG TN +TL++ L G F S +DTEVI +L R + D Sbjct: 122 SN--NGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFAD 179 Query: 160 RFIDSLRHVQGAYAMLALT---RTKLIATRDPIGIRPLIMGELHGKPIFC 206 ++ R V+G+YA+L + +L A+R PL++G C Sbjct: 180 LALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGC 226 >gnl|CDD|163136 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. Length = 589 Score = 58.2 bits (141), Expect = 4e-09 Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 62/212 (29%) Query: 15 CGVFGIL----GHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 CG+ G + PD A + + L L RG +A G H++ Sbjct: 2 CGICGEIRFDGQAPDVAAVVRM-LAVLAPRGPDAGG--------VHAQ------------ 40 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQII----RNVQPLF-ADLQVGGIAIAHNGNFTNGLTL 125 G +A+GH R II + QP+ A+L G+A+ NG N L Sbjct: 41 --------GPVALGHRRLK-----IIDLSEASQQPMVDAEL---GLALVFNGCIYNYREL 84 Query: 126 RKKLISSGAIFQSTSDTEVIL---HLIARSQKNGSCDRFIDSLRHVQG--AYAMLALTRT 180 R +L + G F S DTEVIL H R D + G A+A+ Sbjct: 85 RAELEALGYRFFSDGDTEVILKAYHAWGR-----------DCVSRFNGMFAFAIWERDSG 133 Query: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCAL 212 +L+ RD +GI+PL E G+ F S AL Sbjct: 134 RLLLARDRLGIKPLYYAEDAGRLRFASSLPAL 165 >gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing). Length = 578 Score = 55.2 bits (133), Expect = 3e-08 Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 49/205 (23%) Query: 15 CGVFGILGHPDAATLT---AIGLHA-LQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 CG+ +LG D + + L L+HRG + +G+ ER L ++ Sbjct: 2 CGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHER-LAIM-----D 55 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130 PE+ GDQ PL+ + + I + NG N LR+KL Sbjct: 56 PES------------------GDQ------PLYNEDK--TIVVTANGEIYNHKELREKL- 88 Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLAL-TRTK-LIATRDP 188 F++ SD EVI HL +++G + F+D L G ++ + L TR IA RD Sbjct: 89 -KLHKFRTGSDCEVIAHLY---EEHG--EEFVDMLD---GMFSFVLLDTRDNSFIAARDH 139 Query: 189 IGIRPLIMG-ELHGKPIFCSETCAL 212 IGI PL +G L G F SE AL Sbjct: 140 IGITPLYIGWGLDGSVWFASEMKAL 164 >gnl|CDD|178562 PLN02981, PLN02981, glucosamine:fructose-6-phosphate aminotransferase. Length = 680 Score = 54.8 bits (132), Expect = 6e-08 Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 29/189 (15%) Query: 15 CGVFGILGHPDAATLTAI------GLHALQHRGQEATGIISFNGNKFHS----------- 57 CG+F L + I GL L++RG ++ GI N S Sbjct: 2 CGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGK 61 Query: 58 -ERHLGLVGDHFTKPE-TLSLLPGNMA-IGHVRYSTTGDQIIRNVQPLFADLQVGGIAIA 114 E + V + + + L L+ N A I H R++T G RN P + + Sbjct: 62 IESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPG-NEFLVV 120 Query: 115 HNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIA--------RSQKNGSCDRFIDSLR 166 HNG TN L++ L+ G F+S +DTEVI L ++ +R Sbjct: 121 HNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMR 180 Query: 167 HVQGAYAML 175 ++GAYA++ Sbjct: 181 QLEGAYALI 189 >gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional. Length = 181 Score = 42.9 bits (102), Expect = 2e-04 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL---------RVASPMVLYPDFYGI 405 L G+ V+++DD + G T I GA+EV+ R A P+ DF G+ Sbjct: 95 LKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTHDRKAKPLK--ADFVGL 152 Query: 406 DIPD 409 ++PD Sbjct: 153 EVPD 156 >gnl|CDD|179036 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated. Length = 202 Score = 39.8 bits (94), Expect = 0.002 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 24/88 (27%) Query: 302 GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI----LAG 357 GG+P A A+ +P F+ H I L G Sbjct: 74 GGIPLAAAVARALDLPA------------IFVRKE--------AKDHGEGGQIEGRRLFG 113 Query: 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 KRV++++D I G + ++ V+ IR+AGA Sbjct: 114 KRVLVVEDVITTGGSVLEAVEAIRAAGA 141 >gnl|CDD|180357 PRK06031, PRK06031, phosphoribosyltransferase; Provisional. Length = 233 Score = 38.6 bits (90), Expect = 0.004 Identities = 13/40 (32%), Positives = 22/40 (55%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 +L G+RV LIDD I G + V ++++ + G + A Sbjct: 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAA 190 >gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein; Provisional. Length = 200 Score = 36.4 bits (85), Expect = 0.018 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 274 IYVSRRNMGKN---LAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGR 330 I++ ++G + L + +AD++ D V +G AK SG+P ++ + G+ Sbjct: 54 IHIDWSSIGSSSSRLRYIASAMADMLEKE-DEEVDVVVGIAK-SGVPLAT-LVADEL-GK 109 Query: 331 TFI--EPSHHIRAFGVKLKH--SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 P G K S N + GKR V++DD I GTT + ++ ++ G Sbjct: 110 DLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGK 169 Query: 387 EV 388 V Sbjct: 170 PV 171 >gnl|CDD|177882 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase. Length = 189 Score = 36.2 bits (84), Expect = 0.018 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 11/77 (14%) Query: 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV--------HLRVASP 395 K+ + + + GK V+L++D + G T +V + + GA+ V R Sbjct: 84 AKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVK 143 Query: 396 MVLYPD--FY-GIDIPD 409 L D Y G + PD Sbjct: 144 YELVGDGKEYVGFECPD 160 >gnl|CDD|172342 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional. Length = 170 Score = 36.0 bits (83), Expect = 0.023 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 23/95 (24%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 D+V + GGVP A+ + +G P+ IIR H Sbjct: 58 DVVAGVAVGGVPLAVAVSLAAGKPY--AIIRKEAKD------------------HGKAGL 97 Query: 354 IL---AGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 I+ GKRV+L++D G +++ ++ +R+AGA Sbjct: 98 IIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGA 132 >gnl|CDD|179172 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase; Provisional. Length = 285 Score = 36.0 bits (84), Expect = 0.023 Identities = 11/34 (32%), Positives = 22/34 (64%) Query: 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 GK V+++DD I G T +++++ GA +V++ Sbjct: 204 GKDVLIVDDIISTGGTMATAIKILKEQGAKKVYV 237 >gnl|CDD|177997 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase. Length = 302 Score = 34.3 bits (79), Expect = 0.069 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 17/98 (17%) Query: 294 DIVVPIPD-GGVPAAIGYAKE-SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSAN 351 D+VV PD GGV A +AK+ S P I+ G E + I VK Sbjct: 152 DLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRQGHNVAEVMNLIG--DVK------ 201 Query: 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 GK +++DD I T K ++ GA EV+ Sbjct: 202 -----GKVAIMVDDMIDTAGTITKGAALLHQEGAREVY 234 >gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason. Length = 308 Score = 33.0 bits (76), Expect = 0.19 Identities = 15/34 (44%), Positives = 22/34 (64%) Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 + GK VV++DD I G T K ++++SAGA V Sbjct: 208 VEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRV 241 >gnl|CDD|179411 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional. Length = 175 Score = 32.4 bits (75), Expect = 0.27 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 I G RV+++DD + G T ++++ GA Sbjct: 111 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGA 142 >gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase; Provisional. Length = 304 Score = 32.2 bits (74), Expect = 0.28 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Query: 350 ANRTI--LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 ANR + + G+ VL+DD I G T V+ ++ AGA +V Sbjct: 192 ANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDV 232 >gnl|CDD|161762 TIGR00201, comF, comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis. Length = 190 Score = 31.7 bits (72), Expect = 0.38 Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 G+ +VL+DD + G T +I +++ GA+ V Sbjct: 152 GRNIVLVDDVVTTGATLHEIARLLLELGAASV 183 >gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate. Length = 268 Score = 31.7 bits (72), Expect = 0.40 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 30/139 (21%) Query: 263 ARPDSIISGRSIYVSRRNMGKN--LAKESPVIA--------DIVVPIPDGGVPAAIGYAK 312 + P+ I+ G +Y++ +GK L+K ++A D V+ + G+P A A Sbjct: 90 SEPERILPGGYLYLTDI-LGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVAS 148 Query: 313 ESGIPF----------EQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVL 362 +P E + +YV + S+ I+ + A R++ G +V++ Sbjct: 149 VLNVPLVIVRKDSKVTEGSTVSINYVSGS----SNRIQTMSL-----AKRSLKTGSKVLI 199 Query: 363 IDDSIVRGTTSVKIVQMIR 381 IDD + G T ++ ++ Sbjct: 200 IDDFMKAGGTINGMINLLD 218 >gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme. Length = 173 Score = 31.6 bits (72), Expect = 0.50 Identities = 12/33 (36%), Positives = 24/33 (72%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 +L G +VV+++D I GT+ ++ V++I++AG Sbjct: 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQ 137 >gnl|CDD|180877 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase; Provisional. Length = 301 Score = 31.4 bits (72), Expect = 0.58 Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 + AG+ VL+DD + G T ++ + +R+AGA+ Sbjct: 204 PDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASP 242 >gnl|CDD|181466 PRK08558, PRK08558, adenine phosphoribosyltransferase; Provisional. Length = 238 Score = 31.1 bits (71), Expect = 0.69 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 50/137 (36%) Query: 273 SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP--AAIG--------YAK---------- 312 + V+ R MG + D+V+ G+P AI YAK Sbjct: 100 APVVAERFMGLRV--------DVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKF 151 Query: 313 -ESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 E GI Y+ P+ ++ G RV+++DD I G Sbjct: 152 YEEYQRLASGIEVTLYL------PASALKK---------------GDRVLIVDDIIRSGE 190 Query: 372 TSVKIVQMIRSAGASEV 388 T ++ + R AGA V Sbjct: 191 TQRALLDLARQAGADVV 207 >gnl|CDD|184429 PRK13973, PRK13973, thymidylate kinase; Provisional. Length = 213 Score = 31.1 bits (71), Expect = 0.73 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 13/56 (23%) Query: 129 LISSGAIFQSTSDTEVILHLIARSQ----------KNGS---CDRFIDSLRHVQGA 171 ++ SGA E +L AR G CDRFIDS R QG Sbjct: 52 VLLSGAAELYGPRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGV 107 >gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional. Length = 178 Score = 30.7 bits (70), Expect = 0.81 Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 L GKRV ++DD + G T + +++ AG V Sbjct: 118 LKGKRVAIVDDVVSTGGTLTALERLVERAGGQVV 151 >gnl|CDD|162198 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage. Length = 169 Score = 30.7 bits (70), Expect = 0.86 Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 I G+RV+++DD + G T+ ++IR G V Sbjct: 106 IKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVE 141 >gnl|CDD|179265 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase; Provisional. Length = 309 Score = 30.5 bits (70), Expect = 1.1 Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 G+ +L+DD I T K + ++ GA V Sbjct: 207 EGRDCILVDDMIDTAGTLCKAAEALKERGAKSV 239 >gnl|CDD|172769 PRK14281, PRK14281, chaperone protein DnaJ; Provisional. Length = 397 Score = 30.1 bits (68), Expect = 1.2 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%) Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIR-NV 99 T+PET+ +PG IGH+R S GDQ +R NV Sbjct: 322 TQPETMLRIPGK-GIGHLRGSGRGDQYVRVNV 352 >gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional. Length = 187 Score = 30.1 bits (68), Expect = 1.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 I G RV +IDD++ G T + +++ I ++G Sbjct: 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGG 142 >gnl|CDD|179425 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional. Length = 323 Score = 29.7 bits (67), Expect = 1.6 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 +AGK+ +LIDD + G T + +++ GA+E++ VAS Sbjct: 216 VAGKKAILIDDILNTGKTFAEAAKIVEREGATEIY-AVAS 254 >gnl|CDD|184341 PRK13810, PRK13810, orotate phosphoribosyltransferase; Provisional. Length = 187 Score = 29.0 bits (65), Expect = 2.5 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 16/93 (17%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 D V + GGVP A + E+G+P I+R ++ +G + + Sbjct: 75 DTVAGVELGGVPLATAVSLETGLPLL--IVRK------------SVKDYGTGSRFVGDLK 120 Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 R+V+++D G + + ++++R AGA Sbjct: 121 --PEDRIVMLEDVTTSGGSVREAIEVVREAGAY 151 >gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase. Length = 187 Score = 29.3 bits (66), Expect = 2.6 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 + G+R ++IDD I G T + ++ AGA EV Sbjct: 122 VEPGERALVIDDLIATGGTLCAAINLLERAGA-EVV 156 >gnl|CDD|184342 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional. Length = 176 Score = 29.0 bits (65), Expect = 3.2 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 22/88 (25%) Query: 302 GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT---ILAGK 358 G VP + E+G+P+ I R + +G + NR + G+ Sbjct: 68 GAVPLVAVTSVETGVPYV--IARKQA------------KEYG-----TGNRIEGRLDEGE 108 Query: 359 RVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 VV+++D G ++V V+ +R AGA+ Sbjct: 109 EVVVLEDIATTGQSAVDAVEALREAGAT 136 >gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional. Length = 227 Score = 28.5 bits (64), Expect = 3.7 Identities = 10/34 (29%), Positives = 21/34 (61%) Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 + G+ + ++DD + G+T +I Q++ GA+ V Sbjct: 185 VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASV 218 >gnl|CDD|162659 TIGR02012, tigrfam_recA, protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. Length = 321 Score = 28.5 bits (64), Expect = 4.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDS 164 +S+ T + LH IA +QK G FID+ Sbjct: 64 ESSGKTTLALHAIAEAQKAGGTAAFIDA 91 >gnl|CDD|130805 TIGR01744, XPRTase, xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen. Length = 191 Score = 28.2 bits (63), Expect = 4.4 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 359 RVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 RV++IDD + G + +V + + AGA Sbjct: 119 RVLIIDDFLANGQAAHGLVDIAKQAGAK 146 >gnl|CDD|169401 PRK08359, PRK08359, transcription factor; Validated. Length = 176 Score = 28.3 bits (63), Expect = 4.5 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 202 KPIFCSETCALEITGAKYIRDVENGETIVCE 232 KP +C E C EI G + +E E +VC+ Sbjct: 5 KPRYC-EICGAEIRGPGHRIRIEGAELLVCD 34 >gnl|CDD|152663 pfam12228, DUF3604, Protein of unknown function (DUF3604). This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length. Length = 592 Score = 28.0 bits (63), Expect = 5.1 Identities = 8/14 (57%), Positives = 10/14 (71%) Query: 111 IAIAHNGNFTNGLT 124 +AI HN N +NGL Sbjct: 214 LAIPHNSNLSNGLM 227 >gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta. Length = 868 Score = 28.1 bits (62), Expect = 5.3 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 35 HALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQ 94 H H+G+ G + +E HLG GD F +P L L I + Sbjct: 758 HTWAHKGRHPRGQVYGYRMSLWAE-HLGKTGDEFVEPSDLECLKKVNTISEENWK----- 811 Query: 95 IIRNVQPLFADLQ 107 R + P F++LQ Sbjct: 812 --RFIDPKFSELQ 822 >gnl|CDD|179476 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase; Provisional. Length = 330 Score = 27.8 bits (62), Expect = 6.3 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 26/112 (23%) Query: 289 SPVI---------ADIVVPIPD-GGVPAAIGYAKE-SGIPFEQGIIRNHYVGRTFIEPSH 337 SPV+ DIVV PD GGV A +AK+ + P II E + Sbjct: 166 SPVLLDYLASKNLEDIVVVSPDVGGVARARAFAKKLNDAPL--AIIDKRRQAHNVAEVLN 223 Query: 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 I + GK +L+DD I G T + +++R GA +V+ Sbjct: 224 VIGD-------------VKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVY 262 >gnl|CDD|131756 TIGR02709, branched_ptb, branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds. Length = 271 Score = 27.8 bits (61), Expect = 7.4 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 320 QGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQM 379 +GII+ H + + ++ H ++ + L H A + AGK +L D ++ T ++++ Sbjct: 74 KGIIQTHTLLKEMLKSEHQLKNKPI-LSHVAMVELPAGKTFLLTDCAMNIAPTQATLIEI 132 Query: 380 IRSAGASEVHLRVASPMV 397 + +A L + P + Sbjct: 133 VENAKEVAQKLGLHHPKI 150 >gnl|CDD|184292 PRK13740, PRK13740, conjugal transfer protein TraY; Provisional. Length = 70 Score = 27.4 bits (61), Expect = 9.4 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%) Query: 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS---EVHLRVASPMVLYPDFYGIDI 407 G++V L D T+ K+++ +G S EV +R+ + +PDFY +I Sbjct: 10 PGRKVSLKLDE----DTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEI 60 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0619 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,174,688 Number of extensions: 548119 Number of successful extensions: 1153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1060 Number of HSP's successfully gapped: 68 Length of query: 488 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 391 Effective length of database: 3,898,497 Effective search space: 1524312327 Effective search space used: 1524312327 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.7 bits)