RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(488 letters)
>gnl|CDD|181660 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.
Length = 479
Score = 890 bits (2301), Expect = 0.0
Identities = 314/477 (65%), Positives = 379/477 (79%), Gaps = 5/477 (1%)
Query: 1 MCSKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERH 60
+ + E+CGVFGILGHPDAA LTA+GLHALQHRGQEA GI+SF+G +FHSER
Sbjct: 8 FPDDDLDDDTLREECGVFGILGHPDAAALTALGLHALQHRGQEAAGIVSFDGERFHSERR 67
Query: 61 LGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT 120
+GLVGDHFT + ++ LPGN AIGHVRYSTTG+ I+RNVQPLFA+L+ GG+AIAHNGN T
Sbjct: 68 MGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLT 127
Query: 121 NGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT 180
N LTLR++LI GAIFQSTSDTEVILHLIARS+K DRFID+LR V+GAY+++ALT T
Sbjct: 128 NALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTNT 187
Query: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFIS 240
KLI RDP+GIRPL++GEL G PI SETCAL+I GA+++RDVE GE +V + EDG S
Sbjct: 188 KLIGARDPLGIRPLVLGELDGSPILASETCALDIIGAEFVRDVEPGELVV--IDEDG--S 243
Query: 241 IDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIP 300
I+S K P R CIFEYVYFARPDS++ GRS+Y R+N+G+ LA+ESPV AD+VVP+P
Sbjct: 244 IESIKPFPPQPARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDADVVVPVP 303
Query: 301 DGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360
D GVPAAIGYA+ESGIPFE GIIRNHYVGRTFI+P+ IR GVKLKH+ANR ++ GKRV
Sbjct: 304 DSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRV 363
Query: 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSS 420
VL+DDSIVRGTTS KIVQM+R AGA EVHLR+ASP + +P FYGID P+ + LLA S
Sbjct: 364 VLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATH-S 422
Query: 421 PQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQH 477
+EM +IG DSL FLS+DGLY A+ R+P P + D CFTGDYPT L D++ +
Sbjct: 423 LEEMAEYIGADSLAFLSIDGLYRAVGEEGRNPAAPQYCDACFTGDYPTGLTDQEGES 479
>gnl|CDD|162218 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase.
Length = 442
Score = 588 bits (1517), Expect = e-168
Identities = 224/456 (49%), Positives = 301/456 (66%), Gaps = 17/456 (3%)
Query: 15 CGVFGILGH-PDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73
CGV GI DAA+LT GL+ALQHRGQEA GI +GNK + + GLV D F
Sbjct: 1 CGVVGIYSQEEDAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVF-DERH 59
Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133
L L GN+ IGHVRYST G + N QP + GGIA+AHNGN N LR++L G
Sbjct: 60 LERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSP-GGIALAHNGNLVNAEELREELEEEG 118
Query: 134 AIFQSTSDTEVILHLIAR--SQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGI 191
IF +TSD+EV+LHL+AR +++ + L+ V+GAYA++ + LIA RDP GI
Sbjct: 119 RIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMIGDGLIAVRDPHGI 178
Query: 192 RPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSP 251
RPL++G+ + SE+CAL+I GA++IRDVE GE +V + + G + + +P
Sbjct: 179 RPLVLGKRGDGYVVASESCALDILGAEFIRDVEPGEAVV--IDDGGL----ESRLFANTP 232
Query: 252 ERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYA 311
CIFEYVYFARPDS+I G S+Y +R+ MG+ LA+ESPV AD+V+P+PD G AA+G+A
Sbjct: 233 RAPCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSGRSAALGFA 292
Query: 312 KESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371
+ SGIP+ +G+I+N YVGRTFI P+ +R V+LK + R + GKRVVL+DDSIVRGT
Sbjct: 293 QASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGT 352
Query: 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVD 431
TS +IV+M+R AGA EVH+R+ASP + YP +YGID+P L+AN + +E+ IG D
Sbjct: 353 TSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG-RTVEEIAKEIGAD 411
Query: 432 SLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467
SL +LS++GL AI + CFTG+YP
Sbjct: 412 SLAYLSLEGLKEAI-----GKKISDLCLACFTGEYP 442
>gnl|CDD|180913 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 559 bits (1442), Expect = e-160
Identities = 227/468 (48%), Positives = 308/468 (65%), Gaps = 8/468 (1%)
Query: 6 NNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVG 65
K +NE+CGVFGI GHPDAA LT GLH+LQHRGQE GI+S + K R LGL+
Sbjct: 3 YEVKSLNEECGVFGIWGHPDAAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLS 62
Query: 66 DHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTL 125
+ F P L L G AIGHVRY+T G I N+QP +AHNGN TN ++L
Sbjct: 63 EVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSL 122
Query: 126 RKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIAT 185
RK+L GAIF S+SDTE+++HLI RS + ++L V+G +A L LT KLIA
Sbjct: 123 RKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTEDKLIAA 182
Query: 186 RDPIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSY 244
DP G RPL +G++ +G + SETCA ++ GA+++RDV+ GE ++ + ++G I DSY
Sbjct: 183 LDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVI--IDDEG-IQYDSY 239
Query: 245 KNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGV 304
+ +C EY+YFARPDS I G +++ +R+ MGK LA+E P ADIV+ +P+ +
Sbjct: 240 TTDTQLA--ICSMEYIYFARPDSTIHGVNVHTARKRMGKRLAQEFPHDADIVIGVPNSSL 297
Query: 305 PAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLID 364
AA GYA+ESG+P+E G+++N YV RTFI+P+ +R GV++K SA ++ GKRVV++D
Sbjct: 298 SAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVD 357
Query: 365 DSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEM 424
DSIVRGTTS +IVQ+++ AGA EVH+ +ASP + YP FYGIDI L++ S +E+
Sbjct: 358 DSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISAN-HSVEEI 416
Query: 425 CNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472
C+ IG DSL +LSVDGL +I G+ D N F GDYPTPL D
Sbjct: 417 CDIIGADSLTYLSVDGLIESI-GLDTDAPNGGLCVAYFDGDYPTPLYD 463
>gnl|CDD|178059 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 547 bits (1411), Expect = e-156
Identities = 232/459 (50%), Positives = 311/459 (67%), Gaps = 12/459 (2%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
CGV GI G P+A+ L +GLHALQHRGQE GI++ +GN+ S GLV D F + + L
Sbjct: 2 CGVVGIFGDPEASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESK-L 60
Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134
LPG++AIGHVRYST G ++NVQP A+ + G I +AHNGN N LR KL +G+
Sbjct: 61 DQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGS 120
Query: 135 IFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPL 194
IF ++SDTEV+LHLIA S+ R +D+ ++GAY+M+ LT KL+A RDP G RPL
Sbjct: 121 IFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTEDKLVAVRDPHGFRPL 180
Query: 195 IMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPER 253
+MG +G +F SETCAL++ GA Y R+V GE IV + +D +S P P +
Sbjct: 181 VMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIV--VDKDKGVS-SQCLMPHPEP-K 236
Query: 254 MCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKE 313
CIFE++YFARP+SI+ GRS+Y SR G+ LA E PV D+V+P+PD G AA+GYA +
Sbjct: 237 PCIFEHIYFARPNSIVFGRSVYESRLEFGEILATEIPVDCDVVIPVPDSGRVAALGYAAK 296
Query: 314 SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTS 373
G+PF+QG+IR+HYVGRTFIEPS IR F VKLK + R++L GKRVV++DDSIVRGTTS
Sbjct: 297 LGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTS 356
Query: 374 VKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433
KIV+M+R AGA EVH+R+ASP ++ +YG+D P L++N+ S +E+ FIG DSL
Sbjct: 357 SKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSV-EEIRKFIGCDSL 415
Query: 434 GFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472
FL ++ L ++ ++P F CF+GDYP
Sbjct: 416 AFLPLEDLKKSL-----GEESPRFCYACFSGDYPVLPKR 449
>gnl|CDD|180262 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional.
Length = 469
Score = 544 bits (1404), Expect = e-155
Identities = 229/457 (50%), Positives = 302/457 (66%), Gaps = 15/457 (3%)
Query: 13 EKCGVFGI--LGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
E+CGVFG+ + D A+LT GL+ALQHRGQE+ GI +G K + +GLV + F+K
Sbjct: 13 EECGVFGVFSKNNIDVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSK 72
Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130
E L L GN AIGHVRYSTTG + N QPL A+ ++G IAIAHNGN N +R+ L
Sbjct: 73 -EKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLE 131
Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIG 190
G IFQ++ D+EVIL+LIARS K G +D+++ ++G+YA++ LT KLI RDP G
Sbjct: 132 DGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTEDKLIGVRDPHG 191
Query: 191 IRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTS 250
IRPL +G+L I SE+CAL+ GA++IRDVE GE ++ + EDG SI +
Sbjct: 192 IRPLCLGKLGDDYILSSESCALDTIGAEFIRDVEPGEIVI--IDEDGIKSIKFAEKTKCQ 249
Query: 251 PERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGY 310
C FEY+YFARPDS+I G S+Y SR G+ L KE PV ADIV+ +PD G+PAAIGY
Sbjct: 250 T---CAFEYIYFARPDSVIDGISVYESRVRAGRQLYKEYPVDADIVIGVPDSGIPAAIGY 306
Query: 311 AKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRG 370
A+ SGIP+ G I+N YVGRTFI PS +R V++K + + + GKRVVLIDDSIVRG
Sbjct: 307 AEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRG 366
Query: 371 TTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGV 430
TTS ++V+++R AGA EVH RV+SP V YP ++GID P L+ S +E+ IG
Sbjct: 367 TTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIGAN-MSVEEIREMIGA 425
Query: 431 DSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467
DSLG+LS++GL ++ G + F CF G YP
Sbjct: 426 DSLGYLSIEGLLESLNG------DKGFCLGCFNGVYP 456
>gnl|CDD|181456 PRK08525, PRK08525, amidophosphoribosyltransferase; Provisional.
Length = 445
Score = 540 bits (1394), Expect = e-154
Identities = 230/459 (50%), Positives = 304/459 (66%), Gaps = 17/459 (3%)
Query: 14 KCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73
C V G++ +AA L L A+QHRGQEA+GI NG K + + GLV F + +
Sbjct: 1 MCAVVGVINSKNAAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNE-DN 59
Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133
L L G +AIGH RYST G+ I + QP+FA +G IAI HNGN N +R +LI G
Sbjct: 60 LKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDG 119
Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193
AIFQ+ DTE ++HLIARS+K DR I++L+ + GAY ++ L+R+K+ A RDP G+RP
Sbjct: 120 AIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIGAYCLVLLSRSKMFAIRDPHGVRP 179
Query: 194 LIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSY-KNPSTSP 251
L +G L G I SETCA ++ GA++IRDV+ GE ++ E D F SI + P
Sbjct: 180 LSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPTP---- 235
Query: 252 ERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYA 311
R+C FEY+YFARPDSI+ G+++Y R+ MG+ LAK+ P+ AD VVP+PD GVPAAIGYA
Sbjct: 236 -RICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFPIKADFVVPVPDSGVPAAIGYA 294
Query: 312 KESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371
+ESGIPFE I+RNHYVGRTFIEP+ +R VKLK + +L GKR+V+IDDSIVRGT
Sbjct: 295 QESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGT 354
Query: 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALL-ANKCSSPQEMCNFIGV 430
TS KIV ++R+AGA E+HLR+A P + +P +YGID P L+ ANK S +E+ +IG
Sbjct: 355 TSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELISANK--SVEEVRKYIGA 412
Query: 431 DSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTP 469
DSL FLS+D L +I D + + A F GDY
Sbjct: 413 DSLSFLSIDELTRSI----GDERKYSLA--SFDGDYFIK 445
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
Length = 475
Score = 487 bits (1255), Expect = e-138
Identities = 221/462 (47%), Positives = 302/462 (65%), Gaps = 8/462 (1%)
Query: 9 KQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHF 68
K +NE+CGVFGI GH +AA +T GLH+LQHRGQE GI+ +G K + + LGLV + F
Sbjct: 6 KGLNEECGVFGIWGHEEAAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVF 65
Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128
+ L L G AIGHVRY+T G NVQPL Q G +A+AHNGN N L+ +
Sbjct: 66 -QNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQ 124
Query: 129 LISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDP 188
L + G+IFQ+TSDTEV+ HLI RS ++ ++L ++GAYA L +T T+L DP
Sbjct: 125 LENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTETELYVALDP 184
Query: 189 IGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248
G+RPL +G L + SETCA ++ GA Y R+VE GE ++ + ++G + S +
Sbjct: 185 NGLRPLSIGRLGDAYVVASETCAFDVIGATYEREVEPGELLI--INDEG---MRSERFAP 239
Query: 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAI 308
+C EY+YFARPDS + G +++ +R+N+GK LA E+PV AD+V +PD + AAI
Sbjct: 240 NQNRSICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEADVVTGVPDSSISAAI 299
Query: 309 GYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIV 368
GYA+ +GIP+E G+I+N YVGRTFI+PS +R GVK+K S R ++ GKRVV++DDSIV
Sbjct: 300 GYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIV 359
Query: 369 RGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFI 428
RGTTS +IV M+R AGA+EVH+R++SP + +P FYGID L+A+ S +E+ I
Sbjct: 360 RGTTSRRIVTMLREAGATEVHVRISSPPITHPCFYGIDTSTKEELIASN-HSVEEIRQLI 418
Query: 429 GVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPL 470
G DSL FLS +GL I G P + N CFTG YPT +
Sbjct: 419 GADSLAFLSQEGLLEGI-GRPYESPNCGQCLACFTGQYPTEI 459
>gnl|CDD|180940 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 476 bits (1226), Expect = e-135
Identities = 212/468 (45%), Positives = 308/468 (65%), Gaps = 19/468 (4%)
Query: 13 EKCGVFGIL-GHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKP 71
E CGVFG+ + A LT GL+ALQHRGQE+ GI +F G+K H + +GLV F
Sbjct: 32 EACGVFGVYAPGEEVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVF-DE 90
Query: 72 ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131
+ L LPG++A+GH RYSTTG N QP + ++G +A+AHNGN N + LR++L++
Sbjct: 91 DILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLA 150
Query: 132 SGAIFQSTSDTEVILHLIARSQKNGS--CDRFIDSLRHVQGAYAMLALTRTKLIATRDPI 189
G +T+D+E+I IA++ G + I + + QGA++++ T L+ RDP
Sbjct: 151 RGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTPEGLMGVRDPN 210
Query: 190 GIRPLIMGELH----GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245
GIRPL++G L G+ + SETCAL+I GA+Y+RDVE GE + + E G + S+
Sbjct: 211 GIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVW--ITEGG---LSSFH 265
Query: 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP 305
++CIFE +YFARPDS + G S+Y R+ +G+ LAKESPV AD+V+ +PD G+P
Sbjct: 266 WAQEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDSGIP 325
Query: 306 AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDD 365
AAIG+++ SGIP+ +G+I+N YVGRTFI+P+ +R G+++K + + +LAGKR++++DD
Sbjct: 326 AAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDD 385
Query: 366 SIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425
SIVRGTTS KIV+ +R AGA+EVH+R++SP V +P FYGID L+A S +E+
Sbjct: 386 SIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPCFYGIDTDTQDQLIAAT-KSVEEIA 444
Query: 426 NFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDK 473
IGVDSL +LS +G+ A DP + F CFTGDYP P+ ++
Sbjct: 445 EQIGVDSLAYLSWEGMLEA---TGEDPNS--FCSACFTGDYPIPIPEQ 487
>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional.
Length = 471
Score = 469 bits (1208), Expect = e-133
Identities = 231/469 (49%), Positives = 315/469 (67%), Gaps = 8/469 (1%)
Query: 9 KQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHF 68
K +NE+CGVFGI GH +AA ++ GLH+LQHRGQE GI+ NG K + LGL+ + F
Sbjct: 6 KGLNEECGVFGIWGHENAAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVF 65
Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128
++ E L L G AIGHVRY+T G + NVQPL +A+AHNGN N LR++
Sbjct: 66 SRGE-LEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRE 124
Query: 129 LISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDP 188
L + G+IFQ++SDTEV+LHLI RS K+ + ++L V+GA+A L LT ++I DP
Sbjct: 125 LEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTGNEMIVALDP 184
Query: 189 IGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248
G RPL +G++ + SETCA ++ GA YIRDVE GE ++ + ++G I +D + N
Sbjct: 185 NGFRPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLI--INDEG-IHVDRFTN-- 239
Query: 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAI 308
+C EY+YFARPDS I+G +++ +R+NMGK LA E+P+ AD+V +PD + AAI
Sbjct: 240 EVDHAICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAI 299
Query: 309 GYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIV 368
GYA+ +GIP+E G+I+N YVGRTFI+PS +R GVK+K SA R ++ GKRVV+IDDSIV
Sbjct: 300 GYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIV 359
Query: 369 RGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFI 428
RGTTS +IV+M+R AGA+EVH+R+ASP + YP FYGIDI L+A + +E+ I
Sbjct: 360 RGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAAN-HTVEEIREMI 418
Query: 429 GVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQH 477
G DSL FLS DGL +AI G P + + F GDYPT L D + +
Sbjct: 419 GADSLTFLSEDGLVDAI-GRPYEGKYGGLCMAYFNGDYPTALYDYEQEL 466
>gnl|CDD|181143 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.
Length = 510
Score = 457 bits (1178), Expect = e-129
Identities = 205/469 (43%), Positives = 293/469 (62%), Gaps = 23/469 (4%)
Query: 13 EKCGVFGILGHP--DAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
++CGVFG+ P + A LT GL+ALQHRGQEA GI +G++ + LGLV F +
Sbjct: 22 DECGVFGVWA-PGEEVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDE 80
Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGG-IAIAHNGNFTNGLTLRKKL 129
TL+ L G++AIGH RYSTTG N QP F GG +A+ HNGN N L +
Sbjct: 81 Q-TLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARA 139
Query: 130 ISSGAIFQ-----STSDTEVILHLIARSQKNGSC-DRFIDSLRHVQGAYAMLALTRTKLI 183
G I +T+DT+++ L+A + + ++ L V+GA+ ++ + L
Sbjct: 140 RDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDEHTLY 199
Query: 184 ATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDS 243
A RDP G+RPL++G L + SET AL+I GA ++R++E GE I + DG + S
Sbjct: 200 AARDPQGVRPLVLGRLERGWVVASETAALDIVGASFVREIEPGELIA--IDADG---LRS 254
Query: 244 YKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGG 303
+ +P + C+FEYVY ARPD+ I+GRS++ +R +G+ LA+E PV AD+V+P+P+ G
Sbjct: 255 TRFAEPTP-KGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313
Query: 304 VPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLI 363
PAA+GYA+ESGIPF QG+++N YVGRTFI+PS IR G++LK + R ++ GKR+V++
Sbjct: 314 TPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVV 373
Query: 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQE 423
DDSIVRG T +V+M+R AGA+EVH+R++SP V +P FYGID L+AN + +E
Sbjct: 374 DDSIVRGNTQRALVRMLREAGAAEVHVRISSPPVKWPCFYGIDFASRAELIANGL-TVEE 432
Query: 424 MCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472
+ IG DSLG++S+DG+ A P A CF G YP L D
Sbjct: 433 IRRSIGADSLGYISLDGMIAA-TEQPASRLCTA----CFDGVYPIELPD 476
>gnl|CDD|181724 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 383 bits (987), Expect = e-107
Identities = 200/491 (40%), Positives = 275/491 (56%), Gaps = 55/491 (11%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
CG+ GI+GH L LQHRGQ+A GI++ +GN+F + GLV D F +
Sbjct: 2 CGIVGIVGHSPVNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFR-TRHM 60
Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVG---GIAIAHNGNFTNGLTLRKKLIS 131
L GNM IGHVRY T G QP + V GI +AHNGN TN LRK+L
Sbjct: 61 RRLQGNMGIGHVRYPTAGSSSSAEAQPFY----VNSPYGITLAHNGNLTNAEELRKEL-- 114
Query: 132 SGAIFQ-------STSDTEVILHLIARS-QKNGSCDRFIDSL--------RHVQGAYAML 175
F+ +TSD+EV+L++ A QK + + R V+GAYA++
Sbjct: 115 ----FEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVV 170
Query: 176 AL-TRTKLIATRDPIGIRPLIMGELH--GKP--IFCSETCALEITGAKYIRDVENGETIV 230
A+ L+A RDP GIRPL++G+ G + SE+ AL+ G +++RDV GE I
Sbjct: 171 AMIIGHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIY 230
Query: 231 CELQEDG-FISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLA--- 286
+ EDG + +NP +P CIFEYVYFARPDSII G S+Y +R MG+ LA
Sbjct: 231 --ITEDGQLHTRQCAENPKLNP---CIFEYVYFARPDSIIDGISVYKARLRMGEKLAEKI 285
Query: 287 -KESP-VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV 344
+E P + D+V+PIPD AA+ A+ G+P+ +G ++N YVGRTFI P R V
Sbjct: 286 KREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSV 345
Query: 345 KLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYG 404
+ K +A R GK V+L+DDSIVRGTTS +IVQM R AGA +V+ A+P V +P+ YG
Sbjct: 346 RQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPNVYG 405
Query: 405 IDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPA---FADHC 461
ID+P L+A+ + +E+ IG D L + ++ L A+ R+ NP F C
Sbjct: 406 IDMPTANELIAHG-RTVEEIRQIIGADGLIYQDLEDLIEAV----RE-GNPDIKQFECSC 459
Query: 462 FTGDYPTPLVD 472
F G+Y T +D
Sbjct: 460 FDGEYVTGDID 470
>gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional.
Length = 474
Score = 379 bits (975), Expect = e-106
Identities = 194/462 (41%), Positives = 279/462 (60%), Gaps = 14/462 (3%)
Query: 7 NYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGD 66
++ +E C V G G +A + L LQHRGQE+ G+ F+G K H ++ +GLV D
Sbjct: 12 TGQKPSEDCAVVGFKGGINAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTD 71
Query: 67 HFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLR 126
F P T + G + +GH RYST G + + N P + +G I I+HNG N LR
Sbjct: 72 VF-NPATDPI-KGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELR 129
Query: 127 KKLISSGAIFQSTSDTEVILHLIARS-QKNGSCDRFIDSLRHVQGAYAMLALTRTKLIAT 185
+++ G IFQS SDTEV+L ++R+ K G + F S+ ++GAYA + +L A
Sbjct: 130 EEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMINDRLYAI 189
Query: 186 RDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245
RDP GIRPL++G+ I SE+CA++ I++VE GE V E+ ++G+ +I
Sbjct: 190 RDPNGIRPLVLGKNFDGYIIASESCAIDALSGTTIKNVEPGE--VVEVFDNGYKTIFKLD 247
Query: 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP 305
+ C+FEYVYF+RPDSII G ++Y +R MG LAKESPV AD+VVP+PD G
Sbjct: 248 GDKVA---HCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSGRS 304
Query: 306 AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDD 365
AIG++ SGIP+ +G+I+N Y RTFI P+ R +KLK + R +++GKR+VL+DD
Sbjct: 305 QAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDD 364
Query: 366 SIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425
SIVRG T IV+++R GA EVH+R+ SP ++ P ++G+D+ +A + + +E+
Sbjct: 365 SIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPCYFGVDMKTKDQFIA-RGKTDEEIN 423
Query: 426 NFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467
N IG DSL FLS+DGL AI GI + C TG YP
Sbjct: 424 NEIGADSLAFLSIDGLKQAI-GI----KENNLCLGCLTGIYP 460
>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional.
Length = 442
Score = 370 bits (952), Expect = e-103
Identities = 210/462 (45%), Positives = 278/462 (60%), Gaps = 31/462 (6%)
Query: 11 INEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
+ EKCG+F +A L ALQHRGQE GI S ++ + + GLV + F K
Sbjct: 1 MREKCGIFAAYSE-NAPKKAYYALIALQHRGQEGAGI-SVWRHRIRTVKGHGLVSEVF-K 57
Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130
+LS L N+AIGHVRYST+G + VQPL + IAIAHNG TN L LR+K
Sbjct: 58 GGSLSRLKSNLAIGHVRYSTSGS--LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYE 115
Query: 131 SSGAIFQSTSDTEVI-LHLIARSQKNGSCDRFIDSLR----HVQGAYAMLALTRTKLIAT 185
S G F+S+ DTE+I + + + G D F +++R V+GAY++ L K+I
Sbjct: 116 SRGVKFRSSVDTELIGISFLWHYSETG--DEF-EAMREVFNEVKGAYSVAILFDGKIIVA 172
Query: 186 RDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245
RDP+G RPL GE G F SE AL + + IRDV GE V + E S K
Sbjct: 173 RDPVGFRPLSYGEGDGH-YFASEDSALRMFVNE-IRDVFPGEVFV--VSEGEVES----K 224
Query: 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP 305
+ C+FEY+YFARPDS+I G S+Y +R MG LA+ESP D+V+ +PD G
Sbjct: 225 VLAREKHHHCVFEYIYFARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGRT 284
Query: 306 AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDD 365
AA+G+A ESGIP+ +G+I+N Y+GRTFI PS R VKLK S R ++ GKRVVL+DD
Sbjct: 285 AALGFAHESGIPYMEGLIKNRYIGRTFIMPSG--RELKVKLKLSPVREVINGKRVVLVDD 342
Query: 366 SIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425
SIVRGTT +IV+M+R AGA EVH+R+ASP + YP + GIDIP L+A S +++
Sbjct: 343 SIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPCYMGIDIPTRHELIA-AWGSVEDIR 401
Query: 426 NFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467
IG DSL +LSV+GL A+ G ++ A C TG+YP
Sbjct: 402 KEIGADSLAYLSVEGLKRAV-GT----EDLCMA--CLTGEYP 436
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
(isomerizing). The member from Methanococcus jannaschii
contains an intein.
Length = 607
Score = 101 bits (255), Expect = 3e-22
Identities = 73/234 (31%), Positives = 109/234 (46%), Gaps = 24/234 (10%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
CG+ G +G DA + GL L++RG ++ GI + K + +G V +
Sbjct: 1 CGIVGYIGQRDAVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQE-LANKLGE 59
Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134
LPG + IGH R++T G N P + G IA+ HNG N LR++L + G
Sbjct: 60 KPLPGGVGIGHTRWATHGKPTEENAHPHTD--EGGRIAVVHNGIIENYAELREELEARGH 117
Query: 135 IFQSTSDTEVILHLIARSQKNGSCDRFIDS----LRHVQGAYAMLALT---RTKLIATRD 187
+F S +DTEVI HLI + G +++ L+ ++GAYA+ L L+A R
Sbjct: 118 VFVSDTDTEVIAHLIEEYLREG--GDLLEAVQKALKQLRGAYALAVLHADHPETLVAARS 175
Query: 188 PIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGETIVCELQEDGF 238
PLI+G G+ S+ AL R V E+G+ + L DG
Sbjct: 176 G---SPLIVGLGDGENFVASDVTAL----LPVTRRVIYLEDGDIAI--LTRDGV 220
>gnl|CDD|178980 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
aminotransferase; Reviewed.
Length = 604
Score = 92.0 bits (230), Expect = 3e-19
Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 32/238 (13%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
CG+ G +G +AA + GL L++RG ++ GI + + +G V +
Sbjct: 2 CGIVGYVGQRNAAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKV-ANLEAKLEE 60
Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNG---NFTNGLTLRKKLIS 131
LPG IGH R++T G RN P G IA+ HNG N+ L+++L++
Sbjct: 61 EPLPGTTGIGHTRWATHGKPTERNAHPHTD--CSGRIAVVHNGIIENY---AELKEELLA 115
Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSC--DRFIDSLRHVQGAYAMLALTRTKLIATRDP- 188
G +F+S +DTEVI HLI K G + +L+ ++GAYA+ + + +P
Sbjct: 116 KGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDK------DEPD 169
Query: 189 --IGIR---PLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGETIVCELQEDGF 238
+ R PL++G G+ S+ AL Y R V E+GE + L DG
Sbjct: 170 TIVAARNGSPLVIGLGEGENFLASDALAL----LPYTRRVIYLEDGE--IAVLTRDGV 221
>gnl|CDD|162406 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff.
Length = 467
Score = 81.6 bits (202), Expect = 4e-16
Identities = 58/253 (22%), Positives = 86/253 (33%), Gaps = 54/253 (21%)
Query: 17 VFGILGHPDAATLTAIGLHALQ----HRGQEATGIISFNGNKFHSERHLGLVGDHFTKPE 72
+ G D A + + HRG +A+GI +GN
Sbjct: 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNA------------------ 42
Query: 73 TLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISS 132
+GH R + + QP+ + I NG N LR++L +
Sbjct: 43 ---------ILGHRRLAIID--LSGGAQPMSNE--GKTYVIVFNGEIYNHEELREELEAK 89
Query: 133 GAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIR 192
G FQ+ SDTEVILHL ++ G + +D L + A+A+ + +L RD GI+
Sbjct: 90 GYTFQTDSDTEVILHLY---EEWG--EECVDRLDGMF-AFALWDSKKGELFLARDRFGIK 143
Query: 193 PLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPE 252
PL G+ F SE AL I + P
Sbjct: 144 PLYYAYDGGQLYFASEIKALLAH----------PRNIKPFPDGAALAPGFGFV---RVPP 190
Query: 253 RMCIFEYVYFARP 265
F V+ P
Sbjct: 191 PSTFFRGVFELEP 203
>gnl|CDD|181851 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 77.6 bits (192), Expect = 7e-15
Identities = 68/211 (32%), Positives = 84/211 (39%), Gaps = 58/211 (27%)
Query: 15 CGVFGILGHP-DAATLTAIGLHALQ---HRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
CG+FGIL DA L L + HRG + +GI D
Sbjct: 2 CGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGI---------------YASD---- 42
Query: 71 PETLSLLPGNMAIGHVRYS----TTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLR 126
N +GH R S G Q PL+ + G +A NG N LR
Sbjct: 43 ---------NAILGHERLSIVDVNGGAQ------PLYN--EDGTHVLAVNGEIYNHQELR 85
Query: 127 KKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTK---LI 183
+L A FQ+ SD EVIL L Q+ G F+D L G +A AL ++ +
Sbjct: 86 AELGDKYA-FQTGSDCEVILALY---QEKGP--DFLDDL---DGMFAF-ALYDSEKDAYL 135
Query: 184 ATRDPIGIRPLIMGE-LHGKPIFCSETCALE 213
RDPIGI PL G HG F SE AL
Sbjct: 136 IARDPIGIIPLYYGYDEHGNLYFASEMKALV 166
>gnl|CDD|185544 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 640
Score = 74.7 bits (184), Expect = 5e-14
Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 38/265 (14%)
Query: 3 SKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGN------KFH 56
+ + CG+ G LG+ DA+ + G+ LQ+RG ++ GI + + K+
Sbjct: 13 CFIKKSRFYDYCCGIVGYLGNEDASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYA 72
Query: 57 SERHLGLVGDHFTKPETLSL---LPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAI 113
S+ G D + L + I H R++T G + N P D + IA+
Sbjct: 73 SD---GTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENAHPHC-DYK-KRIAL 127
Query: 114 AHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHV----Q 169
HNG N + L+ +LI+ G F+S +D+EVI +LI G + F ++++ Q
Sbjct: 128 VHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQG--EDFQEAVKSAISRLQ 185
Query: 170 GAYAMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRD---V 223
G + + + + LI R+ PL++G SE A AKY + +
Sbjct: 186 GTWGLCIIHKDNPDSLIVARNG---SPLLVGIGDDSIYVASEPSAF----AKYTNEYISL 238
Query: 224 ENGETIVCELQEDGFISIDSYKNPS 248
++GE + EL + ++
Sbjct: 239 KDGE--IAELSLEN---VNDLYTQR 258
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase 1 system-associated
amidotransferase 1. The predicted protein-sorting
transpeptidase that we call exosortase (see TIGR02602)
has distinct subclasses that associated with different
types of exopolysaccharide production loci. This model
represents a distinct clade among a set of
amidotransferases largely annotated (not necessarily
accurately) as glutatime-hydrolyzing asparagine
synthases. Members of this clade are essentially
restricted to the characteristic exopolysaccharide (EPS)
regions that contain the exosortase 1 genome (xrtA), in
genomes that also have numbers of PEP-CTERM domain
(TIGR02595) proteins.
Length = 628
Score = 65.5 bits (160), Expect = 3e-11
Identities = 60/209 (28%), Positives = 83/209 (39%), Gaps = 55/209 (26%)
Query: 15 CGVFGILG-----HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFT 69
CG+ GI D L + A HRG + G+ H E +GL
Sbjct: 2 CGITGIFDLTGQRPIDRDLLRRMN-DAQAHRGPDGGGV--------HVEPGIGL------ 46
Query: 70 KPETLSLLPGNMAIGHVRYSTTGDQIIR---NVQPLFADLQVGGIAIAHNGNFTNGLTLR 126
GH R S II QPLF + G + + NG N L
Sbjct: 47 --------------GHRRLS-----IIDLSGGQQPLFNE--DGSVVVVFNGEIYNFQELV 85
Query: 127 KKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG--AYAMLALTRTKLIA 184
+L + G +F++ SDTEVI+H A + +C + +G A+A+ + L
Sbjct: 86 AELQALGHVFRTRSDTEVIVH--AWEEWGEAC------VERFRGMFAFALWDRNQETLFL 137
Query: 185 TRDPIGIRPLIMGEL-HGKPIFCSETCAL 212
RD +GI+PL L G IF SE AL
Sbjct: 138 ARDRLGIKPLYYALLADGWFIFGSELKAL 166
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 65.5 bits (160), Expect = 3e-11
Identities = 53/205 (25%), Positives = 77/205 (37%), Gaps = 41/205 (20%)
Query: 15 CG---VFGILGHPDAATLTAIGLHA-LQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
CG +F G A+ L L+HRG + +GII + +
Sbjct: 2 CGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLE-----NSPGT----YNILA 52
Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130
E L+++ +++ G QPL D + +A+ NG N +R +L
Sbjct: 53 HERLAIV--DLSDGK--------------QPLLDDDET--VALMQNGEIYNHWEIRPELE 94
Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTK--LIATRDP 188
G F S SD E+I HL + H+ G +A + A RD
Sbjct: 95 KEGYKFSSNSDCEIIGHLYKEYGPKDFWN-------HLDGMFATVIYDMKTNTFFAARDH 147
Query: 189 IGIRPLIMG-ELHGKPIFCSETCAL 212
IGI PL +G G F SE AL
Sbjct: 148 IGIIPLYIGYAKDGSIWFSSELKAL 172
>gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 670
Score = 62.6 bits (152), Expect = 2e-10
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 43/230 (18%)
Query: 15 CGVFGILGHPDAATLTAI------GLHALQHRGQEATGIISFNGNKFHSE---------- 58
CG+FG H T+ I G+ +++RG ++ G+ E
Sbjct: 2 CGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTP 61
Query: 59 -----RHLGLVGDH----FTKPETLSLLPGN------MAIGHVRYSTTGDQIIRNVQPLF 103
R +G + F++ +L P + + I H R++T G RN P
Sbjct: 62 RPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQ 121
Query: 104 ADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVIL----HLIARSQKNGSCD 159
++ G I HNG TN +TL++ L G F S +DTEVI +L R + D
Sbjct: 122 SN--NGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFAD 179
Query: 160 RFIDSLRHVQGAYAMLALT---RTKLIATRDPIGIRPLIMGELHGKPIFC 206
++ R V+G+YA+L + +L A+R PL++G C
Sbjct: 180 LALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGC 226
>gnl|CDD|163136 TIGR03104, trio_amidotrans, asparagine synthase family
amidotransferase. Members of this protein family are
closely related to several isoforms of asparagine
synthetase (glutamine amidotransferase) and typically
have been given this name in genome annotation to date.
Each is part of a conserved three-gene cassette sparsely
distributed across at least twenty different species
known so far, including alpha, beta, and gamma
Proteobacteria, Mycobacterium, and Prosthecochloris,
which is a member of the Chlorobi. The other two members
of the cassette are a probable protease and a member of
the GNAT family of acetyltransferases.
Length = 589
Score = 58.2 bits (141), Expect = 4e-09
Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 62/212 (29%)
Query: 15 CGVFGIL----GHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
CG+ G + PD A + + L L RG +A G H++
Sbjct: 2 CGICGEIRFDGQAPDVAAVVRM-LAVLAPRGPDAGG--------VHAQ------------ 40
Query: 71 PETLSLLPGNMAIGHVRYSTTGDQII----RNVQPLF-ADLQVGGIAIAHNGNFTNGLTL 125
G +A+GH R II + QP+ A+L G+A+ NG N L
Sbjct: 41 --------GPVALGHRRLK-----IIDLSEASQQPMVDAEL---GLALVFNGCIYNYREL 84
Query: 126 RKKLISSGAIFQSTSDTEVIL---HLIARSQKNGSCDRFIDSLRHVQG--AYAMLALTRT 180
R +L + G F S DTEVIL H R D + G A+A+
Sbjct: 85 RAELEALGYRFFSDGDTEVILKAYHAWGR-----------DCVSRFNGMFAFAIWERDSG 133
Query: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCAL 212
+L+ RD +GI+PL E G+ F S AL
Sbjct: 134 RLLLARDRLGIKPLYYAEDAGRLRFASSLPAL 165
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing).
Length = 578
Score = 55.2 bits (133), Expect = 3e-08
Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 49/205 (23%)
Query: 15 CGVFGILGHPDAATLT---AIGLHA-LQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
CG+ +LG D + + L L+HRG + +G+ ER L ++
Sbjct: 2 CGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHER-LAIM-----D 55
Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130
PE+ GDQ PL+ + + I + NG N LR+KL
Sbjct: 56 PES------------------GDQ------PLYNEDK--TIVVTANGEIYNHKELREKL- 88
Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLAL-TRTK-LIATRDP 188
F++ SD EVI HL +++G + F+D L G ++ + L TR IA RD
Sbjct: 89 -KLHKFRTGSDCEVIAHLY---EEHG--EEFVDMLD---GMFSFVLLDTRDNSFIAARDH 139
Query: 189 IGIRPLIMG-ELHGKPIFCSETCAL 212
IGI PL +G L G F SE AL
Sbjct: 140 IGITPLYIGWGLDGSVWFASEMKAL 164
>gnl|CDD|178562 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 54.8 bits (132), Expect = 6e-08
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 29/189 (15%)
Query: 15 CGVFGILGHPDAATLTAI------GLHALQHRGQEATGIISFNGNKFHS----------- 57
CG+F L + I GL L++RG ++ GI N S
Sbjct: 2 CGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGK 61
Query: 58 -ERHLGLVGDHFTKPE-TLSLLPGNMA-IGHVRYSTTGDQIIRNVQPLFADLQVGGIAIA 114
E + V + + + L L+ N A I H R++T G RN P + +
Sbjct: 62 IESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPG-NEFLVV 120
Query: 115 HNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIA--------RSQKNGSCDRFIDSLR 166
HNG TN L++ L+ G F+S +DTEVI L ++ +R
Sbjct: 121 HNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMR 180
Query: 167 HVQGAYAML 175
++GAYA++
Sbjct: 181 QLEGAYALI 189
>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase;
Provisional.
Length = 181
Score = 42.9 bits (102), Expect = 2e-04
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL---------RVASPMVLYPDFYGI 405
L G+ V+++DD + G T I GA+EV+ R A P+ DF G+
Sbjct: 95 LKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTHDRKAKPLK--ADFVGL 152
Query: 406 DIPD 409
++PD
Sbjct: 153 EVPD 156
>gnl|CDD|179036 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.
Length = 202
Score = 39.8 bits (94), Expect = 0.002
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 302 GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI----LAG 357
GG+P A A+ +P F+ H I L G
Sbjct: 74 GGIPLAAAVARALDLPA------------IFVRKE--------AKDHGEGGQIEGRRLFG 113
Query: 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
KRV++++D I G + ++ V+ IR+AGA
Sbjct: 114 KRVLVVEDVITTGGSVLEAVEAIRAAGA 141
>gnl|CDD|180357 PRK06031, PRK06031, phosphoribosyltransferase; Provisional.
Length = 233
Score = 38.6 bits (90), Expect = 0.004
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393
+L G+RV LIDD I G + V ++++ + G + A
Sbjct: 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAA 190
>gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 36.4 bits (85), Expect = 0.018
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 274 IYVSRRNMGKN---LAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGR 330
I++ ++G + L + +AD++ D V +G AK SG+P ++ + G+
Sbjct: 54 IHIDWSSIGSSSSRLRYIASAMADMLEKE-DEEVDVVVGIAK-SGVPLAT-LVADEL-GK 109
Query: 331 TFI--EPSHHIRAFGVKLKH--SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386
P G K S N + GKR V++DD I GTT + ++ ++ G
Sbjct: 110 DLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGK 169
Query: 387 EV 388
V
Sbjct: 170 PV 171
>gnl|CDD|177882 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 36.2 bits (84), Expect = 0.018
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV--------HLRVASP 395
K+ + + + GK V+L++D + G T +V + + GA+ V R
Sbjct: 84 AKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVK 143
Query: 396 MVLYPD--FY-GIDIPD 409
L D Y G + PD
Sbjct: 144 YELVGDGKEYVGFECPD 160
>gnl|CDD|172342 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
Length = 170
Score = 36.0 bits (83), Expect = 0.023
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 23/95 (24%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
D+V + GGVP A+ + +G P+ IIR H
Sbjct: 58 DVVAGVAVGGVPLAVAVSLAAGKPY--AIIRKEAKD------------------HGKAGL 97
Query: 354 IL---AGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
I+ GKRV+L++D G +++ ++ +R+AGA
Sbjct: 98 IIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGA 132
>gnl|CDD|179172 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 36.0 bits (84), Expect = 0.023
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390
GK V+++DD I G T +++++ GA +V++
Sbjct: 204 GKDVLIVDDIISTGGTMATAIKILKEQGAKKVYV 237
>gnl|CDD|177997 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 34.3 bits (79), Expect = 0.069
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 294 DIVVPIPD-GGVPAAIGYAKE-SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSAN 351
D+VV PD GGV A +AK+ S P I+ G E + I VK
Sbjct: 152 DLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRQGHNVAEVMNLIG--DVK------ 201
Query: 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
GK +++DD I T K ++ GA EV+
Sbjct: 202 -----GKVAIMVDDMIDTAGTITKGAALLHQEGAREVY 234
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase. In some
systems, close homologs lacking enzymatic activity exist
and perform regulatory functions. The model is
designated subfamily rather than equivalog for this
reason.
Length = 308
Score = 33.0 bits (76), Expect = 0.19
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
+ GK VV++DD I G T K ++++SAGA V
Sbjct: 208 VEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRV 241
>gnl|CDD|179411 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
Length = 175
Score = 32.4 bits (75), Expect = 0.27
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
I G RV+++DD + G T ++++ GA
Sbjct: 111 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGA 142
>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 304
Score = 32.2 bits (74), Expect = 0.28
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 350 ANRTI--LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
ANR + + G+ VL+DD I G T V+ ++ AGA +V
Sbjct: 192 ANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDV 232
>gnl|CDD|161762 TIGR00201, comF, comF family protein. This protein is found in
species that do (Bacillus subtilis, Haemophilus
influenzae) or do not (E. coli, Borrelia burgdorferi)
have described systems for natural transformation with
exogenous DNA. It is involved in competence for
transformation in Bacillus subtilis.
Length = 190
Score = 31.7 bits (72), Expect = 0.38
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
G+ +VL+DD + G T +I +++ GA+ V
Sbjct: 152 GRNIVLVDDVVTTGATLHEIARLLLELGAASV 183
>gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type.
This model represents the puring operon repressor PurR
of low-GC Gram-positive bacteria. This homodimeric
repressor contains a large region homologous to
phosphoribosyltransferases and is inhibited by
5-phosphoribosyl 1-pyrophosphate.
Length = 268
Score = 31.7 bits (72), Expect = 0.40
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 263 ARPDSIISGRSIYVSRRNMGKN--LAKESPVIA--------DIVVPIPDGGVPAAIGYAK 312
+ P+ I+ G +Y++ +GK L+K ++A D V+ + G+P A A
Sbjct: 90 SEPERILPGGYLYLTDI-LGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVAS 148
Query: 313 ESGIPF----------EQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVL 362
+P E + +YV + S+ I+ + A R++ G +V++
Sbjct: 149 VLNVPLVIVRKDSKVTEGSTVSINYVSGS----SNRIQTMSL-----AKRSLKTGSKVLI 199
Query: 363 IDDSIVRGTTSVKIVQMIR 381
IDD + G T ++ ++
Sbjct: 200 IDDFMKAGGTINGMINLLD 218
>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. The conserved
Lys (K) residue at position 101 of the seed alignment
has been proposed as the active site for the enzyme.
Length = 173
Score = 31.6 bits (72), Expect = 0.50
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386
+L G +VV+++D I GT+ ++ V++I++AG
Sbjct: 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQ 137
>gnl|CDD|180877 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 301
Score = 31.4 bits (72), Expect = 0.58
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
+ AG+ VL+DD + G T ++ + +R+AGA+
Sbjct: 204 PDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASP 242
>gnl|CDD|181466 PRK08558, PRK08558, adenine phosphoribosyltransferase; Provisional.
Length = 238
Score = 31.1 bits (71), Expect = 0.69
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 50/137 (36%)
Query: 273 SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVP--AAIG--------YAK---------- 312
+ V+ R MG + D+V+ G+P AI YAK
Sbjct: 100 APVVAERFMGLRV--------DVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKF 151
Query: 313 -ESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371
E GI Y+ P+ ++ G RV+++DD I G
Sbjct: 152 YEEYQRLASGIEVTLYL------PASALKK---------------GDRVLIVDDIIRSGE 190
Query: 372 TSVKIVQMIRSAGASEV 388
T ++ + R AGA V
Sbjct: 191 TQRALLDLARQAGADVV 207
>gnl|CDD|184429 PRK13973, PRK13973, thymidylate kinase; Provisional.
Length = 213
Score = 31.1 bits (71), Expect = 0.73
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 129 LISSGAIFQSTSDTEVILHLIARSQ----------KNGS---CDRFIDSLRHVQGA 171
++ SGA E +L AR G CDRFIDS R QG
Sbjct: 52 VLLSGAAELYGPRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGV 107
>gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.
Length = 178
Score = 30.7 bits (70), Expect = 0.81
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
L GKRV ++DD + G T + +++ AG V
Sbjct: 118 LKGKRVAIVDDVVSTGGTLTALERLVERAGGQVV 151
>gnl|CDD|162198 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic
analysis suggested omitting the bi-directional best hit
homologs from the spirochetes from the seed for this
model and making only tentative predictions of adenine
phosphoribosyltransferase function for this lineage.
Length = 169
Score = 30.7 bits (70), Expect = 0.86
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
I G+RV+++DD + G T+ ++IR G V
Sbjct: 106 IKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVE 141
>gnl|CDD|179265 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 309
Score = 30.5 bits (70), Expect = 1.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
G+ +L+DD I T K + ++ GA V
Sbjct: 207 EGRDCILVDDMIDTAGTLCKAAEALKERGAKSV 239
>gnl|CDD|172769 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 30.1 bits (68), Expect = 1.2
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIR-NV 99
T+PET+ +PG IGH+R S GDQ +R NV
Sbjct: 322 TQPETMLRIPGK-GIGHLRGSGRGDQYVRVNV 352
>gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional.
Length = 187
Score = 30.1 bits (68), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
I G RV +IDD++ G T + +++ I ++G
Sbjct: 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGG 142
>gnl|CDD|179425 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 323
Score = 29.7 bits (67), Expect = 1.6
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394
+AGK+ +LIDD + G T + +++ GA+E++ VAS
Sbjct: 216 VAGKKAILIDDILNTGKTFAEAAKIVEREGATEIY-AVAS 254
>gnl|CDD|184341 PRK13810, PRK13810, orotate phosphoribosyltransferase; Provisional.
Length = 187
Score = 29.0 bits (65), Expect = 2.5
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
D V + GGVP A + E+G+P I+R ++ +G + +
Sbjct: 75 DTVAGVELGGVPLATAVSLETGLPLL--IVRK------------SVKDYGTGSRFVGDLK 120
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386
R+V+++D G + + ++++R AGA
Sbjct: 121 --PEDRIVMLEDVTTSGGSVREAIEVVREAGAY 151
>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
Length = 187
Score = 29.3 bits (66), Expect = 2.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
+ G+R ++IDD I G T + ++ AGA EV
Sbjct: 122 VEPGERALVIDDLIATGGTLCAAINLLERAGA-EVV 156
>gnl|CDD|184342 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional.
Length = 176
Score = 29.0 bits (65), Expect = 3.2
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 302 GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT---ILAGK 358
G VP + E+G+P+ I R + +G + NR + G+
Sbjct: 68 GAVPLVAVTSVETGVPYV--IARKQA------------KEYG-----TGNRIEGRLDEGE 108
Query: 359 RVVLIDDSIVRGTTSVKIVQMIRSAGAS 386
VV+++D G ++V V+ +R AGA+
Sbjct: 109 EVVVLEDIATTGQSAVDAVEALREAGAT 136
>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
Length = 227
Score = 28.5 bits (64), Expect = 3.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
+ G+ + ++DD + G+T +I Q++ GA+ V
Sbjct: 185 VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASV 218
>gnl|CDD|162659 TIGR02012, tigrfam_recA, protein RecA. This model describes
orthologs of the recA protein. RecA promotes
hybridization of homolgous regions of DNA. A segment of
ssDNA can be hybridized to another ssDNA region, or to a
dsDNA region. ATP is hydrolyzed in the process. Part of
the SOS respones, it is regulated by LexA via
autocatalytic cleavage.
Length = 321
Score = 28.5 bits (64), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDS 164
+S+ T + LH IA +QK G FID+
Sbjct: 64 ESSGKTTLALHAIAEAQKAGGTAAFIDA 91
>gnl|CDD|130805 TIGR01744, XPRTase, xanthine phosphoribosyltransferase. This model
represent a xanthine-specific phosphoribosyltransferase
of Bacillus subtilis and closely related proteins from
other species, mostly from other Gram-positive bacteria.
The adjacent gene is a xanthine transporter; B. subtilis
can import xanthine for the purine salvage pathway or
for catabolism to obtain nitrogen.
Length = 191
Score = 28.2 bits (63), Expect = 4.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 359 RVVLIDDSIVRGTTSVKIVQMIRSAGAS 386
RV++IDD + G + +V + + AGA
Sbjct: 119 RVLIIDDFLANGQAAHGLVDIAKQAGAK 146
>gnl|CDD|169401 PRK08359, PRK08359, transcription factor; Validated.
Length = 176
Score = 28.3 bits (63), Expect = 4.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 202 KPIFCSETCALEITGAKYIRDVENGETIVCE 232
KP +C E C EI G + +E E +VC+
Sbjct: 5 KPRYC-EICGAEIRGPGHRIRIEGAELLVCD 34
>gnl|CDD|152663 pfam12228, DUF3604, Protein of unknown function (DUF3604). This
family of proteins is found in bacteria. Proteins in
this family are typically between 621 and 693 amino
acids in length.
Length = 592
Score = 28.0 bits (63), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 111 IAIAHNGNFTNGLT 124
+AI HN N +NGL
Sbjct: 214 LAIPHNSNLSNGLM 227
>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta.
Length = 868
Score = 28.1 bits (62), Expect = 5.3
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 35 HALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQ 94
H H+G+ G + +E HLG GD F +P L L I +
Sbjct: 758 HTWAHKGRHPRGQVYGYRMSLWAE-HLGKTGDEFVEPSDLECLKKVNTISEENWK----- 811
Query: 95 IIRNVQPLFADLQ 107
R + P F++LQ
Sbjct: 812 --RFIDPKFSELQ 822
>gnl|CDD|179476 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 330
Score = 27.8 bits (62), Expect = 6.3
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 26/112 (23%)
Query: 289 SPVI---------ADIVVPIPD-GGVPAAIGYAKE-SGIPFEQGIIRNHYVGRTFIEPSH 337
SPV+ DIVV PD GGV A +AK+ + P II E +
Sbjct: 166 SPVLLDYLASKNLEDIVVVSPDVGGVARARAFAKKLNDAPL--AIIDKRRQAHNVAEVLN 223
Query: 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
I + GK +L+DD I G T + +++R GA +V+
Sbjct: 224 VIGD-------------VKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVY 262
>gnl|CDD|131756 TIGR02709, branched_ptb, branched-chain phosphotransacylase. This
model distinguishes branched-chain phosphotransacylases
like that of Enterococcus faecalis from closely related
subfamilies of phosphate butyryltransferase (EC
2.3.1.19) (TIGR02706) and phosphate acetyltransferase
(EC 2.3.1.8) (TIGR00651). Members of this family and of
TIGR02706 show considerable crossreactivity, and the
occurrence of a member of either family near an apparent
leucine dehydrogenase will suggest activity on branched
chain-acyl-CoA compounds.
Length = 271
Score = 27.8 bits (61), Expect = 7.4
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 320 QGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQM 379
+GII+ H + + ++ H ++ + L H A + AGK +L D ++ T ++++
Sbjct: 74 KGIIQTHTLLKEMLKSEHQLKNKPI-LSHVAMVELPAGKTFLLTDCAMNIAPTQATLIEI 132
Query: 380 IRSAGASEVHLRVASPMV 397
+ +A L + P +
Sbjct: 133 VENAKEVAQKLGLHHPKI 150
>gnl|CDD|184292 PRK13740, PRK13740, conjugal transfer protein TraY; Provisional.
Length = 70
Score = 27.4 bits (61), Expect = 9.4
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS---EVHLRVASPMVLYPDFYGIDI 407
G++V L D T+ K+++ +G S EV +R+ + +PDFY +I
Sbjct: 10 PGRKVSLKLDE----DTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEI 60
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,174,688
Number of extensions: 548119
Number of successful extensions: 1153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 68
Length of query: 488
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,898,497
Effective search space: 1524312327
Effective search space used: 1524312327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)