RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (488 letters) >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Length = 504 Score = 468 bits (1205), Expect = e-132 Identities = 182/490 (37%), Positives = 258/490 (52%), Gaps = 31/490 (6%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNK-FHSERHLGLVGDHFTKPET 73 CG+ GI G L LQHRGQ+A GII+ + N F + GLV D F + Sbjct: 1 CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVF-EARH 59 Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISS- 132 + L GNM IGHVRY T G QP + + GI +AHNGN TN LRKKL Sbjct: 60 MQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSP-YGITLAHNGNLTNAHELRKKLFEEK 118 Query: 133 GAIFQSTSDTEVILHLIARSQKNGSC---------DRFIDSLRHVQGAYAMLA-LTRTKL 182 +TSD+E++L++ A N + R ++GAYA +A + + Sbjct: 119 RRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGM 178 Query: 183 IATRDPIGIRPLIMGEL-----HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDG 237 +A RDP GIRPL++G+ + + SE+ AL+ G ++RDV GE I + E+G Sbjct: 179 VAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIY--ITEEG 236 Query: 238 FISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKE-----SPVI 292 + + + C+FEYVYFARPDS I S+Y +R NMG L ++ + Sbjct: 237 QLF--TRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLD 294 Query: 293 ADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 D+V+PIP+ A+ A+ G P+ QG ++N YVGRTFI P +R V+ K +ANR Sbjct: 295 IDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANR 354 Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTA 412 K V+L+DDSIVRGTTS +I++M R AGA +V+L A+P + +P+ YGID+P T Sbjct: 355 AEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPSATE 414 Query: 413 LLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 L+A+ E+ IG D L F ++ L +A+ +P F F G Y T VD Sbjct: 415 LIAHG-REVDEIRQIIGADGLIFQDLNDLIDAVRA--ENPDIQQFECSVFNGVYVTKDVD 471 Query: 473 KQSQHNDEEL 482 + + L Sbjct: 472 QGYLDFLDTL 481 >1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Length = 459 Score = 419 bits (1079), Expect = e-118 Identities = 214/459 (46%), Positives = 297/459 (64%), Gaps = 9/459 (1%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CGVFGI GH +A +T GLH+LQHRGQE GI++ +G K + + GL+ + F E L Sbjct: 1 CGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGE-L 59 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQP-LFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133 S + G AIGHVRY+T G NVQP LF G +A+AHNGN N L+++L + G Sbjct: 60 SKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQG 119 Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193 +IFQ++SDTEV+ HLI RS D+ +SL ++GAYA L +T T++I DP G+RP Sbjct: 120 SIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRP 179 Query: 194 LIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPER 253 L +G + + SETCA ++ GA Y+R+VE GE ++ + S + Sbjct: 180 LSIGMMGDAYVVASETCAFDVVGATYLREVEPGEMLIIN-----DEGMKSERFSMNINRS 234 Query: 254 MCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKE 313 +C EY+YF+RPDS I G +++ +R+N+GK LA+ES V AD+V +PD + AAIGYA+ Sbjct: 235 ICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEADVVTGVPDSSISAAIGYAEA 294 Query: 314 SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTS 373 +GIP+E G+I+N YVGRTFI+PS +R GV++K SA R ++ GKRVV++DDSIVRGTTS Sbjct: 295 TGIPYELGLIKNRYVGRTFIQPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTS 354 Query: 374 VKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433 +IV M+R AGA+EVH++++SP + +P FYGID L+A+ S +E+ IG D+L Sbjct: 355 RRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEELIASS-HSVEEIRQEIGADTL 413 Query: 434 GFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 FLSV+GL I G D N CFTG YPT + Sbjct: 414 SFLSVEGLLKGI-GRKYDDSNCGQCLACFTGKYPTEIYQ 451 >2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* Length = 608 Score = 188 bits (478), Expect = 3e-48 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 9/247 (3%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGN-KFHSERHLGLVGDHFTKPET 73 CG+ G + D A + GL L++RG ++ G+ + R LG V Sbjct: 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQA-AE 59 Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133 L G I H R++T G+ N P I + HNG N LR++L + G Sbjct: 60 EHPLHGGTGIAHTRWATHGEPSEVNAHPHV----SEHIVVVHNGIIENHEPLREELKARG 115 Query: 134 AIFQSTSDTEVILHLIARSQKNGSC--DRFIDSLRHVQGAYAMLALTRTKLIATRDPIGI 191 F S +DTEVI HL+ K G + + ++ ++GAY + + Sbjct: 116 YTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG 175 Query: 192 RPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSP 251 PL++G G+ S+ AL ++I +E G+ + + Sbjct: 176 SPLVIGLGMGENFIASDQLALLPVTRRFIF-LEEGDIAEITRRSVNIFDKTGAEVKRQDI 234 Query: 252 ERMCIFE 258 E ++ Sbjct: 235 ESNLQYD 241 >1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Length = 240 Score = 159 bits (404), Expect = 1e-39 Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 9/235 (3%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CG+ G + D A + GL L++RG ++ G+ + + + Sbjct: 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEE 60 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134 L G I H R++T G+ N P I + HNG N LR++L + G Sbjct: 61 HPLHGGTGIAHTRWATHGEPSEVNAHPHV----SEHIVVVHNGIIENHEPLREELKARGY 116 Query: 135 IFQSTSDTEVILHLIARSQKNGSC--DRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIR 192 F S +DTEVI HL+ K G + + ++ ++GAY + + Sbjct: 117 TFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGS 176 Query: 193 PLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNP 247 PL++G G+ S+ AL ++I +E G+ + E+ D Sbjct: 177 PLVIGLGMGENFIASDQLALLPVTRRFIF-LEEGD--IAEITRRSVNIFDKTGAE 228 >1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Length = 257 Score = 126 bits (317), Expect = 1e-29 Identities = 34/246 (13%), Positives = 67/246 (27%), Gaps = 32/246 (13%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQE------ATGIISFNGNKFHSER-HLGLVGDH 67 C + G+ + + L RG GI + G + L V Sbjct: 2 CELLGMSANVPTDIVF--SFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSE 59 Query: 68 FTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRK 127 + + IGH+R + G + N P +L AHNG + Sbjct: 60 VARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPG 119 Query: 128 KLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA-------------- 173 G + +++ + + + + L Y Sbjct: 120 FYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDW 179 Query: 174 MLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEI---------TGAKYIRDVE 224 + +KL P + + F +ET ++ T + + Sbjct: 180 LFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEPLTDNENWTLQQ 239 Query: 225 NGETIV 230 +GE ++ Sbjct: 240 SGEWVL 245 >1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A* Length = 291 Score = 120 bits (301), Expect = 1e-27 Identities = 40/239 (16%), Positives = 77/239 (32%), Gaps = 22/239 (9%) Query: 168 VQGAYAMLALTRTKLIATRDPIGIRPLIM-GELHGKP-IFCSETCALEITGAKYIRDVEN 225 + + ++ LT P + PL E + SE + + Sbjct: 3 FRRSGRLVDLTN---YLLTHPHELIPLTFFSERYESAKSSISEDLTI---IKQTFEQQGI 56 Query: 226 GETIVCELQEDGFISIDSYKNPSTSPERMCIFEYV-YFARPDSIISGRSIYVSR------ 278 G + G I + + A P+ I+ G +Y++ Sbjct: 57 GTLLTVPGAAGGVKYIP---KMKQAEAEEFVQTLGQSLANPERILPGGYVYLTDILGKPS 113 Query: 279 --RNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN-HYVGRTFIE 334 +GK A + D+V+ + G+P A A +P N G T Sbjct: 114 VLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSI 173 Query: 335 PSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 + ++ A R++ G V++IDD + G T ++ ++ A+ + V Sbjct: 174 NYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVL 232 >3mdn_A Glutamine amidotransferases class-II domain prote; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Length = 274 Score = 113 bits (283), Expect = 1e-25 Identities = 36/262 (13%), Positives = 64/262 (24%), Gaps = 43/262 (16%) Query: 15 CGVFGILGHPDA-ATLTAIGLHAL---QHRGQEATGIISFNG---------NKFHSERHL 61 C G P + + H+L +E + +G + R + Sbjct: 4 CRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDV 63 Query: 62 GLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN 121 + + + HVR ST N P HNG Sbjct: 64 YPAWSDPNLRAVAHHVRSGLFLSHVRASTGSCISRNNCHPFA----ARRWCFMHNGQVGG 119 Query: 122 GLTLRKKLISS-----GAIFQSTSDTEVILHLIARSQKNGS----CDRFIDSLRHVQGA- 171 RK+ + + ++D+EV+ L R I L + A Sbjct: 120 FEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAH 179 Query: 172 -------YAMLALTRTKLIATRDPIGIRPLIMGELHGKP----IFCSETCALEITGAKYI 220 + L A R + + SE + Sbjct: 180 GTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEPLETDEGDW--- 236 Query: 221 RDVENGETIVCELQEDGFISID 242 ++ G + + +G D Sbjct: 237 TELRPGRMLT--IGAEGAAERD 256 >1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1 Length = 208 Score = 97.5 bits (242), Expect = 7e-21 Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 42/178 (23%) Query: 275 YVSRRNMGKNLA---KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN------ 325 + RR+ G LA + A +V+ +P GGV A A+ G + ++R Sbjct: 3 FRDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGN 62 Query: 326 ---------------------HYVGRTFIEPSHH-----IRAFGVKLKHSANRTILAGKR 359 Y ++++E +R + + + G+ Sbjct: 63 PEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRD 122 Query: 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR--VASPMVL-----YPDFYGIDIPDP 410 VVL+DD + G + + ++ G V + VASP + + + +P Sbjct: 123 VVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASPEAVERLKARAEVVALSVPQD 180 >1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Length = 513 Score = 95.3 bits (236), Expect = 3e-20 Identities = 39/222 (17%), Positives = 62/222 (27%), Gaps = 36/222 (16%) Query: 57 SERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQV---GGIAI 113 R G V S + G + T +V P A + Sbjct: 20 GGRAPGPVFATR-----GSHTDIDTPQGERSLAAT-LVHAPSVAPDRAVARSLTGAPTTA 73 Query: 114 AHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 G N L L A D E++L L+ ++ + + R V G +A Sbjct: 74 VLAGEIYNRDELLSVL---PAGPAPEGDAELVLRLL---ERYD-----LHAFRLVNGRFA 122 Query: 174 MLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCAL---------------EITGAK 218 + T +++ D G PL G+ +E AL + G Sbjct: 123 TVVRTGDRVLLATDHAGSVPLYTCVAPGEVRASTEAKALAAHRDPKGFPLADARRVAGLT 182 Query: 219 YIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYV 260 + V G + + G P S + E V Sbjct: 183 GVYQVPAGAVMDID-LGSGTAVTHRTWTPGLSRRILPEGEAV 223 >1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1 Length = 175 Score = 79.3 bits (195), Expect = 2e-15 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 3/119 (2%) Query: 278 RRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPF-EQGIIRNHYVGRTFIEPS 336 R + L P A+I+ +P A+ G+P+ Y+ I+ Sbjct: 38 TRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVVAXXXXXPYMEDPIIQEV 97 Query: 337 HHIRAFGVKLKHSANRT--ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 + ++ R L +RVVL+ D + G T + +M+ AG V Sbjct: 98 QTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAV 156 >2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} Length = 205 Score = 76.0 bits (187), Expect = 2e-14 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 19/119 (15%) Query: 278 RRNMGKNLA---KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIE 334 + L + + + D V +P +P A + IP G + Sbjct: 45 LSQVADILFQTAQNAGISFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLV 104 Query: 335 PSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 I G+ ++I+D + G++ ++ V++++ G V Sbjct: 105 EGT----------------INPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVL 147 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Length = 319 Score = 71.0 bits (174), Expect = 5e-13 Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 18/149 (12%) Query: 294 DIVVPIPD-GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 D++V PD GGV A AK+ II R + Sbjct: 167 DLLVVSPDVGGVVRARALAKQLNCDL--AII-------------DKRRPKANVAEVMNII 211 Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTA 412 + G+ V++DD + T K Q+++ GA +V P++ I Sbjct: 212 GEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASALDE 271 Query: 413 LLANKCSSPQEMCNFIGVDSLGFLSVDGL 441 L+ + + + LS GL Sbjct: 272 LVV--TDTIPLSAESLACPKIRALSSAGL 298 >1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553 Score = 71.2 bits (173), Expect = 5e-13 Identities = 44/197 (22%), Positives = 65/197 (32%), Gaps = 40/197 (20%) Query: 15 CGVFGILGHPDAATLTAIGL-HALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73 GVF I A+ L ++HRG + +GI + + Sbjct: 4 FGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASD---------------------- 41 Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133 N + H R S + QPL+ +A NG N LR + Sbjct: 42 ------NAILAHERLSIVD--VNAGAQPLYNQQ--KTHVLAVNGEIYNHQALRAEYGD-R 90 Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193 FQ+ SD EVIL L D A+A+ + + RD +GI P Sbjct: 91 YQFQTGSDCEVILALYQEKGPEFLDD------LQGMFAFALYDSEKDAYLIGRDHLGIIP 144 Query: 194 LIMGELHGKPIFCSETC 210 L MG ++ + Sbjct: 145 LYMGYDEHGQLYVASEM 161 >1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Length = 503 Score = 69.1 bits (168), Expect = 2e-12 Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 13/123 (10%) Query: 99 VQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSC 158 Q + G+ N L +D E++ L + G Sbjct: 43 YQKCEME----RGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLF---TRLG-- 93 Query: 159 DRFIDSLRHVQGAYAMLALTRT-KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGA 217 ++L +G + +L + G P+ + + + S G Sbjct: 94 ---ANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGE 150 Query: 218 KYI 220 + Sbjct: 151 GAL 153 >1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A* Length = 197 Score = 67.3 bits (164), Expect = 8e-12 Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 3/131 (2%) Query: 266 DSIISGRSIYVSRRNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR 324 DS ++ + + + +G A + +V I G+ A+ + G+P Sbjct: 26 DSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKH 85 Query: 325 NHYVGRTFIEPS--HHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRS 382 + + + + + V++IDD + G + +V +++ Sbjct: 86 KSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQ 145 Query: 383 AGASEVHLRVA 393 AGAS + + Sbjct: 146 AGASIAGIGIV 156 >1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1 Length = 153 Score = 49.4 bits (117), Expect = 2e-06 Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 15/143 (10%) Query: 274 IYVSR---RNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG 329 +Y++ LA++ D+++ + GG+ A+ + G +I + Sbjct: 4 VYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGD-IPLKVIDVKFYK 62 Query: 330 RTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 + L KRVV++DD G T +++ ++ GA E+ Sbjct: 63 GIDERGEKPVI-------TIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIK 115 Query: 390 LRVA---SPMVLYPDFYGIDIPD 409 + + PD+Y Sbjct: 116 IACLAMKPWTSVVPDYYVFRTEK 138 >1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A* Length = 152 Score = 47.6 bits (113), Expect = 7e-06 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 14/116 (12%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 ++ + GG+ A+E GI + + Y E RA Sbjct: 30 KGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAE----------- 78 Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPD 409 G+ ++IDD + G T+V I +M A + + A + D Y +DIP Sbjct: 79 -GDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPL--VDDYVVDIPQ 131 >2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A* Length = 213 Score = 47.2 bits (111), Expect = 8e-06 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 13/128 (10%) Query: 274 IYVSR---RNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPF----EQGIIRN 325 Y+S + + A+ D+++ I GG A P I Sbjct: 6 QYISYNNVHQLCQVSAERIKNFKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIIL 65 Query: 326 HYVGRTFIEPSHHIRAF-----GVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMI 380 S + + + L GK V+++D+ TT + + Sbjct: 66 SLYEDLNSVGSEVEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSEL 125 Query: 381 RSAGASEV 388 A + Sbjct: 126 EKDAAEQA 133 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Length = 186 Score = 45.7 bits (108), Expect = 2e-05 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 VV I G A G+ F + + + + + + R Sbjct: 55 TKVVGIESRGFILGGIVANSLGVGFVA-LRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQ 113 Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 + V+L DD + G T + +++ +AG Sbjct: 114 LGPHDVVLLHDDVLATGGTLLAAIELCETAGV 145 >1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1 Length = 183 Score = 44.2 bits (104), Expect = 6e-05 Identities = 16/150 (10%), Positives = 45/150 (30%), Gaps = 15/150 (10%) Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327 + + I R + L + +++ + G V K Sbjct: 14 LYNQDDIQKRIRELAAELTEFYEDKNPVMICVLTGAVFFYTDLLKHLDFQ--------LE 65 Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 ++ G +T + G+ V++++D I G T +++ ++ + Sbjct: 66 PDYIICSSYSGTKSTGNLTISKDLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPAS 125 Query: 388 VHLRV-------ASPMVLYPDFYGIDIPDP 410 + + + D+ G + + Sbjct: 126 LKVCTLCDKDIGKKAYDVPIDYCGFVVENR 155 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 43.4 bits (102), Expect = 1e-04 Identities = 55/348 (15%), Positives = 94/348 (27%), Gaps = 146/348 (41%) Query: 101 PLFADLQVGGIAIA-HNGNFTNGLTLRKKLI-----SSG---AIFQSTSDT--------- 142 PL +Q+ + FT G LR L S G A+ + +D+ Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297 Query: 143 ---EVILHLIARSQK---NGSCDRFI--DSLRHVQGAYA-MLA---LTRTKLIATRD--- 187 V+ + R + N S I DSL + +G + ML+ LT+ ++ + Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357 Query: 188 ---P----IGIRPLIMGE-----------LHGKPIFCSETCALEITGAKYIRDVENGETI 229 P + I L+ G L+G +R + + Sbjct: 358 SHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYG---LNL-----------TLRKAKAPSGL 402 Query: 230 ------------VCELQEDGFISIDSYKNPSTSPERMCIF--EYVY---------FARPD 266 + F+ + SP F + + + Sbjct: 403 DQSRIPFSERKLKFSNR---FLPV-------ASP-----FHSHLLVPASDLINKDLVKNN 447 Query: 267 SIISGRS--IYVSRRNMGKNLAKES-PVIADIVVPIPDGGV--PAAIGYAKESGIPFEQG 321 + + I V G +L S + IV I V + Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF----------- 496 Query: 322 IIRNHYVGRTFIEPSHHIRAFG--------VKLKHSAN----RTILAG 357 + HI FG V + + R I+AG Sbjct: 497 -------------KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531 Score = 41.5 bits (97), Expect = 4e-04 Identities = 75/511 (14%), Positives = 125/511 (24%), Gaps = 233/511 (45%) Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128 T+P TLS G + + + A F L+++ Sbjct: 6 TRPLTLSH-------GSLEHVLL-------------------VPTAS---FFIASQLQEQ 36 Query: 129 LISS----GAIFQSTSDTEVILHL-------IARSQKNGSCDRFIDSLRHV--------- 168 F + + L ++ + +F L Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96 Query: 169 QG------AYAMLALTRTKLIATRDPIGI--RPLIMGELHGKPIFCSETCALEITGAKYI 220 +G A +L T L+ T++ I IM +P AL Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA---KRPFDKKSNSAL-------F 146 Query: 221 RDVE--------------NGETIVCELQE-----DGFIS--IDS----YKNPSTSPERMC 255 R V N + EL++ + I + Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-- 204 Query: 256 IFEYVY---F----------ARPDS--IISGRSIYVSRRNMGKNLAKESPVIADIVVPIP 300 E V+ PD ++S P+ P+ Sbjct: 205 -AEKVFTQGLNILEWLENPSNTPDKDYLLS------------------IPI----SCPL- 240 Query: 301 DGGVPAAIG------YA---KESGI-PFEQGIIRNHYVGRT------------------- 331 IG Y K G P G +R++ G T Sbjct: 241 -------IGVIQLAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWE 290 Query: 332 -FIEPSHHIRA----F--GVKLKHSANRTILAGKRVVLIDDSI--VRGTTSVKIVQM--I 380 F +A F GV+ + T L +++DS+ G S M I Sbjct: 291 SFFVSVR--KAITVLFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPS----PMLSI 341 Query: 381 RSAGASEV---------HLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVD 431 + +V HL P ++I L N + N + Sbjct: 342 SNLTQEQVQDYVNKTNSHL---------PAGKQVEIS-----LVN---GAK---NLV--- 378 Query: 432 SLGFLSVDGLYNAICGIP---RDPQNPAFAD 459 V G ++ G+ R + P+ D Sbjct: 379 ------VSGPPQSLYGLNLTLRKAKAPSGLD 403 Score = 39.9 bits (93), Expect = 0.001 Identities = 43/207 (20%), Positives = 67/207 (32%), Gaps = 70/207 (33%) Query: 24 PDAATLT--AIGLHALQH--RGQEA-TGIISFNGNKF-HSERHLGLVGDHFTKPE-TLSL 76 ++ L+ L R +A +G+ + ++ SER K + + Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGL---DQSRIPFSER----------KLKFSNRF 420 Query: 77 LPGNMAIG---HVRY-STTGDQII-----RNVQPLFADLQVGGIAIAHNGNFTNGLTLRK 127 LP + H D I NV D+Q I + +G LR Sbjct: 421 LP----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ---IPVYDT---FDGSDLRV 470 Query: 128 KLISSGAIFQSTSDTEVILHLIARSQKNGSCD-----RFIDSLRHV----QGAYAML-AL 177 SG+I +E I+ I R +F H+ G + L L Sbjct: 471 ---LSGSI------SERIVDCIIRLP----VKWETTTQF--KATHILDFGPGGASGLGVL 515 Query: 178 T-RTKLIATRDPIGIRPLIMGELHGKP 203 T R K D G+R ++ G L P Sbjct: 516 THRNK-----DGTGVRVIVAGTLDINP 537 Score = 28.8 bits (64), Expect = 2.9 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 34/206 (16%) Query: 167 HVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCAL-------EITGAKY 219 H + Y L I +P+ + GE GK I + + + ++ K Sbjct: 1652 HFKDTYGFSILD----IVINNPVNLTIHFGGE-KGKRIRENYSAMIFETIVDGKLKTEKI 1706 Query: 220 IRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVY---FARPDSIISGRSI-- 274 +++ T E G +S + P+ + FE + D+ +G S+ Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766 Query: 275 YVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIE 334 Y + ++ ++ ES + ++V G + +P ++ + R++Y G I Sbjct: 1767 YAALASLADVMSIES--LVEVVF---------YRGMTMQVAVPRDE-LGRSNY-GMIAIN 1813 Query: 335 PSHHIRAFGVK-LKHSANRTILAGKR 359 P +F + L++ R GKR Sbjct: 1814 PGRVAASFSQEALQYVVERV---GKR 1836 >1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A* Length = 236 Score = 41.5 bits (97), Expect = 4e-04 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 283 KNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSH--HIR 340 + ++ G A E IPF + G + + Sbjct: 62 VQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYK 121 Query: 341 AFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 ++ +I G RVVLIDD + G T++ +Q++ ++ A V Sbjct: 122 EAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVE 170 >1j7j_A HPRT, hypoxanthine phosphoribosyltransferase; glycosyltransferase, nucleotide metabolism, purine salvage; 2.30A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A Length = 178 Score = 41.4 bits (97), Expect = 4e-04 Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 ++V + G +E +P E + + + + ++ Sbjct: 37 VLVGLLRGSFMFMADLCREVQVPHEVDFM-TASSYGSGMSTTRDVK------ILKDLDED 89 Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408 + GK V++++D I G T K+ +++ + + + + +F G IP Sbjct: 90 IRGKDVLIVEDIIDSGNTLSKVREILGLREPKSLAICTLLDKPSRREVDVPVEFVGFSIP 149 Query: 409 D 409 D Sbjct: 150 D 150 >3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} Length = 186 Score = 41.4 bits (97), Expect = 5e-04 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 15/122 (12%) Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 +V+ + G A + I + Y +T G Sbjct: 39 VVIAVLKGSFVFAADLIRHIKNDVTIDFISASSYGNQT--------ETTGKVKLLKDIDV 90 Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDI 407 + GK V++++D I G T + + + L ++ G I Sbjct: 91 NITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDKPERRKVDLTAEYVGFQI 150 Query: 408 PD 409 PD Sbjct: 151 PD 152 >1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1 Length = 211 Score = 40.7 bits (95), Expect = 7e-04 Identities = 14/134 (10%), Positives = 45/134 (33%), Gaps = 13/134 (9%) Query: 282 GKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRA 341 +L ++P+ ++ + G A+ + E ++ ++ + Sbjct: 50 DFHLTADNPLY---LLCVLKGSFIFTADLARF--LADEGVPVKVEFICASSYGSGVETS- 103 Query: 342 FGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASP 395 G R + + ++L++D + T +++ + + + + Sbjct: 104 -GQVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRK 162 Query: 396 MVLYPDFYGIDIPD 409 + + D+ I IP Sbjct: 163 VDVLVDYPVITIPR 176 >3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A Length = 177 Score = 40.6 bits (95), Expect = 7e-04 Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 13/121 (10%) Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 ++V + G A++ + + + G + +++ Sbjct: 36 VLVGLLRGSFVFMADLARQIHLTHQVDFMTASSYG-------NSMQSSRDVRILKDLDDD 88 Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408 + GK V+L++D I G T K+ +++ + + + + ++ G +IP Sbjct: 89 IKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICTLLDKPTRREVDVEVNWVGFEIP 148 Query: 409 D 409 D Sbjct: 149 D 149 >3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine phosphoribosyltransferase, 2-(N- morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A* Length = 204 Score = 40.3 bits (94), Expect = 9e-04 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 17/150 (11%) Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327 +IS I +G +A++ + + + G +P K + E + Sbjct: 34 LISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSS 93 Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 G H + G T + G+ +++++D I G T +V + + A Sbjct: 94 YG-------HSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKS 146 Query: 388 VHLRVASPMVLY--------PDFYGIDIPD 409 V + + + D+ G +P Sbjct: 147 VK--IVTLLDKPTGRKVDLKADYVGFTVPH 174 >1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1 Length = 201 Score = 40.4 bits (94), Expect = 0.001 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 7/120 (5%) Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 +++ IP GV A A + + + + T I+ S Sbjct: 51 VLLGIPTRGVTLANRLAGNI-TEYSGIHVGHGALDITLYRDDLMIKPPRPLASTSIPAGG 109 Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHL-----RVASPMVLYPDFYGIDIP 408 + V+L+DD + G + + +R G V L R + L D+ G ++P Sbjct: 110 IDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAVLVDRGHRELPLRADYVGKNVP 169 >1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A* Length = 205 Score = 38.8 bits (90), Expect = 0.003 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 13/122 (10%) Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 +++ + G + G ++ +P + + + S G+ + Sbjct: 63 VLIGVLKGAIMFMSGLSRAIDLPLSIDFLA-VSSYGSSTKSS------GIVKIIKDHDID 115 Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408 + GK V++++D I G T + + + + + + D+ G IP Sbjct: 116 IEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIP 175 Query: 409 DP 410 D Sbjct: 176 DK 177 >1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A Length = 233 Score = 37.6 bits (87), Expect = 0.006 Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 10/126 (7%) Query: 295 IVVPIPDGGVPAAIGYAKE----SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSA 350 ++ I G + + + ++ + + G S Sbjct: 76 HIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVRLKSYQNDNSTGQLTVLSD 135 Query: 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYG 404 + +I K V++++D + G T + + +++ G + + R L DF G Sbjct: 136 DLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVG 195 Query: 405 IDIPDP 410 I D Sbjct: 196 FSIEDV 201 >2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109 Score = 37.7 bits (87), Expect = 0.007 Identities = 9/47 (19%), Positives = 23/47 (48%) Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 + G +V I + T +++++++S G E+ ++V S + Sbjct: 58 SVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 >3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, magnesium, pyrimidine biosynthesis; 2.40A {Streptococcus mutans} Length = 243 Score = 37.3 bits (86), Expect = 0.008 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 16/111 (14%) Query: 279 RNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHH 338 N KE+ +++ G+P A + +P +P H Sbjct: 87 ENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPL----------AYIRSKPKDH 136 Query: 339 IRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 ++ + G+++V+I+D I G + + V + GA + Sbjct: 137 GAGNQIE------GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLG 181 >2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* Length = 181 Score = 37.3 bits (86), Expect = 0.008 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 13/148 (8%) Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327 IS +I +G +A++ ++ + +G + +P I Sbjct: 13 QISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISS 72 Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 G F R + G+ V++++D + G T ++ + + + Sbjct: 73 YGNAFKSSGEVEL-------LKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPAS 125 Query: 388 VHL------RVASPMVLYPDFYGIDIPD 409 V + + + + G +I D Sbjct: 126 VRVAALLSKPSRRQVEVPIHYLGFEIED 153 >1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A* Length = 220 Score = 36.9 bits (85), Expect = 0.011 Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 12/140 (8%) Query: 276 VSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEP 335 ++ GK L + +++ + G + + V Sbjct: 28 IADDYKGKGLRPYVNPL--VLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSYGEGL 85 Query: 336 SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL----- 390 + + R + G V++++D + T + M + + + Sbjct: 86 TSSGQVR----MLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLD 141 Query: 391 -RVASPMVLYPDFYGIDIPD 409 R + D+ +IP+ Sbjct: 142 KREGRRVPFSADYVVANIPN 161 >3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A* Length = 234 Score = 36.5 bits (84), Expect = 0.013 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 16/103 (15%) Query: 287 KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKL 346 KE +++ G+ A + +P + G+ Sbjct: 83 KEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVRSKAKGHGKGNQIEGK--------- 133 Query: 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 G++VV+++D I G +++ V+ +R AG + Sbjct: 134 -------AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLG 169 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Length = 187 Score = 36.2 bits (83), Expect = 0.017 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 2/92 (2%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 D +V + G A G+ F G F + Sbjct: 61 DYIVGLESRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQ--KNA 118 Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 I AG V+++DD I G ++ +++ A Sbjct: 119 IPAGSNVIIVDDIIATGGSAAAAGELVEQLEA 150 >1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding protein, pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A* Length = 181 Score = 36.2 bits (83), Expect = 0.017 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 8/149 (5%) Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIV-VPIPDGGVPAAIGYAKESGIPFEQGIIRNH 326 I+ ++I + + + + + + + + V I G+ A A+ + Sbjct: 7 ILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGE 66 Query: 327 -YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG- 384 + + S +K + + ++V+L+DD + G T + + G Sbjct: 67 IDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGR 126 Query: 385 ASEVHL-----RVASPMVLYPDFYGIDIP 408 S + L R + + D+ G +IP Sbjct: 127 PSSIQLAVLVDRGHRELPIRADYIGKNIP 155 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 34.9 bits (80), Expect = 0.037 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 24/78 (30%) Query: 183 IATRDPIGIRPLIMGE----LHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGF 238 + TR+ I R G L+ C E C + K + G+ +VC G Sbjct: 1 MMTRESIDKRA---GRRGPNLNIVLT-CPE-CK--VYPPKIVERFSEGD-VVC--ALCGL 50 Query: 239 I----SIDSYKNPSTSPE 252 + +D T E Sbjct: 51 VLSDKLVD------TRSE 62 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Length = 379 Score = 34.7 bits (79), Expect = 0.042 Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 16/112 (14%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 ++V A +A+ + ++ H + Sbjct: 193 AVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLE 252 Query: 354 I----------------LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 I + G+ +++DD I + + + ++ GA ++ Sbjct: 253 IPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIF 304 >3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae} Length = 238 Score = 34.6 bits (79), Expect = 0.046 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 9/126 (7%) Query: 270 SGR--SIYVSRR--NMGKNLAKESPVIADIVVPIPDGGVPA-AIGYAKESGIPFEQGIIR 324 SGR + + N G++LA+ + + D G+ + GIP Sbjct: 52 SGRKSPYFFNAGLFNTGRDLAR---LGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAV 108 Query: 325 NHYVGRTFIEPSHHIRAFGVKL-KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA 383 P R + RV+L+DD I GT + +++I++ Sbjct: 109 ALADHHDVDTPYCFNRKEAKNHGEGGNLVGSKLEGRVMLVDDVITAGTAIRESMELIQAN 168 Query: 384 GASEVH 389 A Sbjct: 169 KADLAG 174 >2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis} Length = 185 Score = 34.6 bits (79), Expect = 0.052 Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 13/148 (8%) Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327 +I+ + + +G+ + ++ +++ + G + G ++ +P + Sbjct: 16 LITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSS 75 Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG--- 384 G ++ G+ + + GK V++++D I G T + + + Sbjct: 76 YG-------SSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRS 128 Query: 385 ---ASEVHLRVASPMVLYPDFYGIDIPD 409 + + + D+ G IPD Sbjct: 129 LKICTILDKPERREADVKVDYCGFKIPD 156 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Length = 317 Score = 34.6 bits (79), Expect = 0.057 Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 16/104 (15%) Query: 294 DIVVPIPD-GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 DIV+ PD GGV A A P II E + + Sbjct: 168 DIVIVSPDHGGVTRARKLADRLKAPI--AIIDKRRPRPNVAEVMNIVGN----------- 214 Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 + GK +LIDD I T + GA EV+ P+ Sbjct: 215 --IEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPV 256 >1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A* Length = 217 Score = 33.8 bits (77), Expect = 0.078 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 22/130 (16%) Query: 295 IVVPIPDGGVPAA---------IGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVK 345 + + + GG + + IP IR + Sbjct: 62 VALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVI----- 116 Query: 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLY 399 + + L GK V++++D I G T ++ ++R V + R + Sbjct: 117 --GGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYK 174 Query: 400 PDFYGIDIPD 409 PDF G +IPD Sbjct: 175 PDFVGFEIPD 184 >1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A Length = 213 Score = 33.8 bits (77), Expect = 0.079 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 13/100 (13%) Query: 287 KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKL 346 +S + D++ G+P A A ++ + P R Sbjct: 58 VDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDL------------PYCFNRKEAKDH 105 Query: 347 KHSANRT-ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 + RV+L+DD I GT + +++I++ GA Sbjct: 106 GEGGSLVGSALQGRVMLVDDVITAGTAIRESMEIIQAHGA 145 >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 Length = 313 Score = 33.6 bits (76), Expect = 0.10 Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 22/113 (19%) Query: 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLI---------DDSIVR------- 369 V F +P + + A R G+RVVL+ + VR Sbjct: 7 DPVAE-FPQP-PGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSS 64 Query: 370 GTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQ 422 G + +AG V + +P Y P T L A + S P Sbjct: 65 GRRGATSAEAFLAAGY-GVLF-LYRARSAFP--YAHRFPPQTWLSALRPSGPA 113 >3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis} Length = 232 Score = 33.1 bits (75), Expect = 0.16 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 8/122 (6%) Query: 270 SGR--SIYVSRR--NMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN 325 SGR + + N G LA + A +++ D G A + GIP I Sbjct: 45 SGRISPYFFNAGLFNTGAQLATLADYYAQLIIK-SDVKYDILFGPAYK-GIPLVAAISTV 102 Query: 326 HYVGRTFIEPSHHIRAFGVK--LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA 383 + P R + K+V+LIDD + GT + ++ Sbjct: 103 LALKYNIDMPYAFDRKEAKDHGEGGVFVGADMTNKKVLLIDDVMTAGTAFYESYNKLKII 162 Query: 384 GA 385 A Sbjct: 163 NA 164 >1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1 Length = 181 Score = 32.8 bits (74), Expect = 0.16 Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 6/147 (4%) Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327 +++ + + + + + + + + FE + Sbjct: 7 LMNAPEMRRALYRIAHEIVEANKGTEGLALVGIHTRGIPLAHRIARFIAEFEGKEVPVGV 66 Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-AS 386 + T + +++ + L GK +VL+DD + G T+ + + G Sbjct: 67 LDITLYRDDLTEIGYRPQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPR 126 Query: 387 EVHL-----RVASPMVLYPDFYGIDIP 408 ++L R + + DF G ++P Sbjct: 127 RIYLAVLVDRGHRELPIRADFVGKNVP 153 >1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111 Score = 32.0 bits (72), Expect = 0.30 Identities = 10/47 (21%), Positives = 23/47 (48%) Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 + G +V I + T +++++++S G EV ++V S + Sbjct: 50 SLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96 >3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106 Score = 31.9 bits (73), Expect = 0.31 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 +L G RV+ I+ V ++V+++R +G + V L V Sbjct: 44 LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLV 81 >2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98 Score = 31.6 bits (72), Expect = 0.41 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 + A R+V ++ + G +V IR+ G E L V Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91 >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706 Score = 31.4 bits (71), Expect = 0.41 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 +S+ T + L +IA +Q+ G FID+ + YA Sbjct: 1091 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 1127 Score = 30.2 bits (68), Expect = 1.0 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 +S+ T + L +IA +Q+ G FID+ + YA Sbjct: 392 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 428 Score = 27.9 bits (62), Expect = 4.7 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 +S+ T + L +IA +Q+ G FID+ + YA Sbjct: 43 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 79 >1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A* Length = 180 Score = 31.2 bits (70), Expect = 0.50 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 2/92 (2%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 D + + G A+E G+ R G T + +G Sbjct: 59 DYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWA--SYSLEYGKAELEIQKDA 116 Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 + G+RVV++DD + G T +++ A Sbjct: 117 LEPGQRVVVVDDLLATGGTMNAACELLGRLQA 148 >1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A* Length = 284 Score = 31.3 bits (70), Expect = 0.53 Identities = 10/54 (18%), Positives = 23/54 (42%) Query: 336 SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 R +++ + + V ++DD I G T V++++ GA ++ Sbjct: 184 LEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKII 237 >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050 Score = 31.1 bits (70), Expect = 0.53 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 +S+ T + L +IA +Q+ G FID+ + YA Sbjct: 1436 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 1472 >2jbh_A HHGP; glycosyltransferase, PRTFDC1, transferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens} Length = 225 Score = 31.1 bits (70), Expect = 0.59 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 22/130 (16%) Query: 295 IVVPIPDGGVP---------AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVK 345 +V+ + GG I + + + IR I Sbjct: 70 MVLCVLKGGYKFXADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGEMQIIGGDDL 129 Query: 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG------ASEVHLRVASPMVLY 399 + GK V++++D + G T ++ I AS + R + Sbjct: 130 STLA-------GKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFR 182 Query: 400 PDFYGIDIPD 409 PD+ G +IP+ Sbjct: 183 PDYAGFEIPN 192 >1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria, purine salvage, transition state inhibitor; HET: IRP; 2.00A {Plasmodium falciparum} SCOP: c.61.1.1 Length = 231 Score = 31.1 bits (70), Expect = 0.61 Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 19/144 (13%) Query: 276 VSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNH-YVGRTFIE 334 + + + ++ + G K + + Sbjct: 61 IKKVYNNEEF---------HILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYV 111 Query: 335 PSHHIRAFGVKLKHSANRTILA---GKRVVLIDDSIVRGTTSVKIVQMIRSAG------A 385 L+ GK V++++D I G T VK + ++ A Sbjct: 112 RVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIA 171 Query: 386 SEVHLRVASPMVLYPDFYGIDIPD 409 R DF G IPD Sbjct: 172 CLFIKRTPLWNGFKADFVGFSIPD 195 >2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129} Length = 180 Score = 30.9 bits (69), Expect = 0.64 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 7/123 (5%) Query: 270 SGR--SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYA-KESGIPFEQGIIRNH 326 SG+ YV R + + + D A G + Sbjct: 28 SGKEADYYVDLRRATLHARASRLIGELLRELTADWDYVAVGGLTLGADPVATSVMHADGR 87 Query: 327 YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 + + + + GK+V++++D+ G + + V+ +R AGA Sbjct: 88 EIHAFVVRKEAKKHGM----QRRIEGPDVVGKKVLVVEDTTTTGNSPLTAVKALREAGAE 143 Query: 387 EVH 389 V Sbjct: 144 VVG 146 >3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A Length = 99 Score = 30.6 bits (69), Expect = 0.79 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 + AG + I+ V G + +V+++ +G +++ LR + Sbjct: 48 QEAGLRAGDLITHINGESVLGLVHMDVVELLLKSG-NKISLRTTAL 92 >2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 3dj3_A Length = 139 Score = 30.4 bits (68), Expect = 0.81 Identities = 5/43 (11%), Positives = 15/43 (34%) Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 + G +++ ++ + T + + + V L V Sbjct: 78 EIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 120 >1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82 Score = 29.7 bits (67), Expect = 1.3 Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 +L + I+ V G +I ++ ++G + V + + Sbjct: 41 LLTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITI 78 >3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104 Score = 29.6 bits (67), Expect = 1.6 Identities = 5/39 (12%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 + G +++ ++ +R + + +++AG V + Sbjct: 54 LRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIA 91 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.6 bits (65), Expect = 1.8 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%) Query: 94 QIIRNVQP---LFADLQVGGIAI 113 Q ++ +Q L+AD +AI Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42 >2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A* Length = 283 Score = 29.3 bits (65), Expect = 2.1 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%) Query: 200 HGKPIFCSETCALEITGAK--YIRDV 223 KPI +E + EI G K +I + Sbjct: 214 INKPIIIAEFASAEIGGNKARWITEA 239 >2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108 Score = 29.1 bits (65), Expect = 2.2 Identities = 10/41 (24%), Positives = 24/41 (58%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 +L G R+V +++ + T+ + V+++++ VHL + S Sbjct: 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103 >1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98 Score = 29.0 bits (65), Expect = 2.3 Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 + G R++ ++ VR +T ++ +I+ A ++ L + Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKEAD-FKIELEI 93 >2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12} Length = 190 Score = 28.8 bits (64), Expect = 2.5 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 2/92 (2%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 VV G A G+ F +R + +G Sbjct: 65 TKVVGTEARGFLFGAPVALGLGVGFV--PVRKPGKLPRETISETYDLEYGTDQLEIHVDA 122 Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 I G +V+++DD + G T V++IR G Sbjct: 123 IKPGDKVLVVDDLLATGGTIEATVKLIRRLGG 154 >3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125 Score = 29.1 bits (65), Expect = 2.7 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 T+ AG + ++ ++G T V++ +MI+ EV + Sbjct: 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYN 102 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Length = 326 Score = 28.5 bits (63), Expect = 3.2 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 7/78 (8%) Query: 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTI-------LAGKRVVLIDDSIVRGTTSVKIVQ 378 + + + A K + AN + + +L+DD T Sbjct: 175 AKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAAD 234 Query: 379 MIRSAGASEVHLRVASPM 396 + SAGA+ V+ + + Sbjct: 235 KLLSAGATRVYAILTHGI 252 >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genomics consortium, SGC, transferase; 2.55A {Homo sapiens} Length = 418 Score = 28.5 bits (63), Expect = 3.4 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 21 LGHPDAAT---LTAIGLHALQHRGQEATGIIS 49 LGHP T L+ L+ RG+ A G++S Sbjct: 369 LGHPLGCTGARQVITLLNELKRRGKRAYGVVS 400 >3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 2ka9_A Length = 196 Score = 28.4 bits (63), Expect = 4.1 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 + G +++ ++ + V +++ V+L+VA P Sbjct: 149 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKP 189 >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Length = 442 Score = 28.3 bits (63), Expect = 4.3 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%) Query: 21 LGHPDAAT---LTAIGLHALQHRGQEAT-GIIS 49 +GHP AT A LH ++ RG++ G++S Sbjct: 371 IGHPLGATGARCVATLLHEMKRRGKDCRFGVVS 403 >2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, sugar binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Length = 234 Score = 28.1 bits (62), Expect = 4.7 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%) Query: 48 ISFNGNKFHSERHLGLVGD-HFTKPETLSLLPG---NMAIGHVRYST 90 +SFN +F + L GD L++ N H Y+T Sbjct: 1 VSFNYTRFKDDGSLIFQGDAKIWTDGRLAMPTDPLVNRTTSHALYAT 47 >2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200 Score = 27.9 bits (61), Expect = 5.4 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 TI G R++ +D + GTT + + +++ G E L + Sbjct: 151 EGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEATLLI 191 >2r4h_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; transferase, structural genomics, structural genomics consortium, SGC; HET: HIS; 2.05A {Homo sapiens} Length = 112 Score = 28.0 bits (62), Expect = 5.5 Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 G ++ I+ + + +++I++ G V L + Sbjct: 70 IGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRG 108 >2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126 Score = 27.8 bits (61), Expect = 5.6 Identities = 8/39 (20%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 + G R++ ++ V G T +++ +I+++ + + L V Sbjct: 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSD-TTLELSV 116 >2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A Length = 105 Score = 27.6 bits (61), Expect = 6.6 Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLY 399 +++ ++ + T + V +++ V+L+VA P +Y Sbjct: 57 KLLAVNSVSLEEVTHEEAVTALKNTS-DFVYLKVAKPTSMY 96 >1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94 Score = 27.5 bits (61), Expect = 6.8 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%) Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 + G +V I+ + IR + S + L++ Sbjct: 44 EAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQL 85 >1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97 Score = 27.5 bits (61), Expect = 7.2 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 I G R++ I+ S ++G + + +++ AG V L++ Sbjct: 49 IHIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQ 89 >2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117 Score = 27.2 bits (60), Expect = 8.5 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 + G +++ ++ + G T + V +++ V L V S Sbjct: 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSS 112 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,264,546 Number of extensions: 204320 Number of successful extensions: 707 Number of sequences better than 10.0: 1 Number of HSP's gapped: 650 Number of HSP's successfully gapped: 97 Length of query: 488 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 392 Effective length of database: 3,365,806 Effective search space: 1319395952 Effective search space used: 1319395952 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.8 bits)