RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(488 letters)
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine
biosynthesis, glycosyltransferase, glutamine
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 468 bits (1205), Expect = e-132
Identities = 182/490 (37%), Positives = 258/490 (52%), Gaps = 31/490 (6%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNK-FHSERHLGLVGDHFTKPET 73
CG+ GI G L LQHRGQ+A GII+ + N F + GLV D F +
Sbjct: 1 CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVF-EARH 59
Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISS- 132
+ L GNM IGHVRY T G QP + + GI +AHNGN TN LRKKL
Sbjct: 60 MQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSP-YGITLAHNGNLTNAHELRKKLFEEK 118
Query: 133 GAIFQSTSDTEVILHLIARSQKNGSC---------DRFIDSLRHVQGAYAMLA-LTRTKL 182
+TSD+E++L++ A N + R ++GAYA +A + +
Sbjct: 119 RRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGM 178
Query: 183 IATRDPIGIRPLIMGEL-----HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDG 237
+A RDP GIRPL++G+ + + SE+ AL+ G ++RDV GE I + E+G
Sbjct: 179 VAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIY--ITEEG 236
Query: 238 FISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKE-----SPVI 292
+ + + C+FEYVYFARPDS I S+Y +R NMG L ++ +
Sbjct: 237 QLF--TRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLD 294
Query: 293 ADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352
D+V+PIP+ A+ A+ G P+ QG ++N YVGRTFI P +R V+ K +ANR
Sbjct: 295 IDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANR 354
Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTA 412
K V+L+DDSIVRGTTS +I++M R AGA +V+L A+P + +P+ YGID+P T
Sbjct: 355 AEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPSATE 414
Query: 413 LLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472
L+A+ E+ IG D L F ++ L +A+ +P F F G Y T VD
Sbjct: 415 LIAHG-REVDEIRQIIGADGLIFQDLNDLIDAVRA--ENPDIQQFECSVFNGVYVTKDVD 471
Query: 473 KQSQHNDEEL 482
+ + L
Sbjct: 472 QGYLDFLDTL 481
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 419 bits (1079), Expect = e-118
Identities = 214/459 (46%), Positives = 297/459 (64%), Gaps = 9/459 (1%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
CGVFGI GH +A +T GLH+LQHRGQE GI++ +G K + + GL+ + F E L
Sbjct: 1 CGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGE-L 59
Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQP-LFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133
S + G AIGHVRY+T G NVQP LF G +A+AHNGN N L+++L + G
Sbjct: 60 SKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQG 119
Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193
+IFQ++SDTEV+ HLI RS D+ +SL ++GAYA L +T T++I DP G+RP
Sbjct: 120 SIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRP 179
Query: 194 LIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPER 253
L +G + + SETCA ++ GA Y+R+VE GE ++ + S +
Sbjct: 180 LSIGMMGDAYVVASETCAFDVVGATYLREVEPGEMLIIN-----DEGMKSERFSMNINRS 234
Query: 254 MCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKE 313
+C EY+YF+RPDS I G +++ +R+N+GK LA+ES V AD+V +PD + AAIGYA+
Sbjct: 235 ICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEADVVTGVPDSSISAAIGYAEA 294
Query: 314 SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTS 373
+GIP+E G+I+N YVGRTFI+PS +R GV++K SA R ++ GKRVV++DDSIVRGTTS
Sbjct: 295 TGIPYELGLIKNRYVGRTFIQPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTS 354
Query: 374 VKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433
+IV M+R AGA+EVH++++SP + +P FYGID L+A+ S +E+ IG D+L
Sbjct: 355 RRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEELIASS-HSVEEIRQEIGADTL 413
Query: 434 GFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472
FLSV+GL I G D N CFTG YPT +
Sbjct: 414 SFLSVEGLLKGI-GRKYDDSNCGQCLACFTGKYPTEIYQ 451
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X*
Length = 608
Score = 188 bits (478), Expect = 3e-48
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 9/247 (3%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGN-KFHSERHLGLVGDHFTKPET 73
CG+ G + D A + GL L++RG ++ G+ + R LG V
Sbjct: 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQA-AE 59
Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133
L G I H R++T G+ N P I + HNG N LR++L + G
Sbjct: 60 EHPLHGGTGIAHTRWATHGEPSEVNAHPHV----SEHIVVVHNGIIENHEPLREELKARG 115
Query: 134 AIFQSTSDTEVILHLIARSQKNGSC--DRFIDSLRHVQGAYAMLALTRTKLIATRDPIGI 191
F S +DTEVI HL+ K G + + ++ ++GAY + +
Sbjct: 116 YTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG 175
Query: 192 RPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSP 251
PL++G G+ S+ AL ++I +E G+ + +
Sbjct: 176 SPLVIGLGMGENFIASDQLALLPVTRRFIF-LEEGDIAEITRRSVNIFDKTGAEVKRQDI 234
Query: 252 ERMCIFE 258
E ++
Sbjct: 235 ESNLQYD 241
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase
[isomerizing]; complex (transferase/inhibitor),
glutamine amidotransferase; HET: GLU; 1.80A {Escherichia
coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Length = 240
Score = 159 bits (404), Expect = 1e-39
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 9/235 (3%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
CG+ G + D A + GL L++RG ++ G+ + + +
Sbjct: 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEE 60
Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134
L G I H R++T G+ N P I + HNG N LR++L + G
Sbjct: 61 HPLHGGTGIAHTRWATHGEPSEVNAHPHV----SEHIVVVHNGIIENHEPLREELKARGY 116
Query: 135 IFQSTSDTEVILHLIARSQKNGSC--DRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIR 192
F S +DTEVI HL+ K G + + ++ ++GAY + +
Sbjct: 117 TFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGS 176
Query: 193 PLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNP 247
PL++G G+ S+ AL ++I +E G+ + E+ D
Sbjct: 177 PLVIGLGMGENFIASDQLALLPVTRRFIF-LEEGD--IAEITRRSVNIFDKTGAE 228
>1te5_A Conserved hypothetical protein; glutamine amidotransferase,
amidotransferase, structural genomics, PSI, protein
structure initiative; 2.00A {Pseudomonas aeruginosa
PAO1} SCOP: d.153.1.1
Length = 257
Score = 126 bits (317), Expect = 1e-29
Identities = 34/246 (13%), Positives = 67/246 (27%), Gaps = 32/246 (13%)
Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQE------ATGIISFNGNKFHSER-HLGLVGDH 67
C + G+ + + L RG GI + G + L V
Sbjct: 2 CELLGMSANVPTDIVF--SFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSE 59
Query: 68 FTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRK 127
+ + IGH+R + G + N P +L AHNG +
Sbjct: 60 VARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPG 119
Query: 128 KLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA-------------- 173
G + +++ + + + + L Y
Sbjct: 120 FYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDW 179
Query: 174 MLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEI---------TGAKYIRDVE 224
+ +KL P + + F +ET ++ T + +
Sbjct: 180 LFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEPLTDNENWTLQQ 239
Query: 225 NGETIV 230
+GE ++
Sbjct: 240 SGEWVL 245
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 120 bits (301), Expect = 1e-27
Identities = 40/239 (16%), Positives = 77/239 (32%), Gaps = 22/239 (9%)
Query: 168 VQGAYAMLALTRTKLIATRDPIGIRPLIM-GELHGKP-IFCSETCALEITGAKYIRDVEN 225
+ + ++ LT P + PL E + SE + +
Sbjct: 3 FRRSGRLVDLTN---YLLTHPHELIPLTFFSERYESAKSSISEDLTI---IKQTFEQQGI 56
Query: 226 GETIVCELQEDGFISIDSYKNPSTSPERMCIFEYV-YFARPDSIISGRSIYVSR------ 278
G + G I + + A P+ I+ G +Y++
Sbjct: 57 GTLLTVPGAAGGVKYIP---KMKQAEAEEFVQTLGQSLANPERILPGGYVYLTDILGKPS 113
Query: 279 --RNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN-HYVGRTFIE 334
+GK A + D+V+ + G+P A A +P N G T
Sbjct: 114 VLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSI 173
Query: 335 PSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393
+ ++ A R++ G V++IDD + G T ++ ++ A+ + V
Sbjct: 174 NYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVL 232
>3mdn_A Glutamine amidotransferases class-II domain prote; structural
genomics, PSI-2, protein structure initiative; 2.09A
{Ruegeria pomeroyi}
Length = 274
Score = 113 bits (283), Expect = 1e-25
Identities = 36/262 (13%), Positives = 64/262 (24%), Gaps = 43/262 (16%)
Query: 15 CGVFGILGHPDA-ATLTAIGLHAL---QHRGQEATGIISFNG---------NKFHSERHL 61
C G P + + H+L +E + +G + R +
Sbjct: 4 CRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDV 63
Query: 62 GLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN 121
+ + + HVR ST N P HNG
Sbjct: 64 YPAWSDPNLRAVAHHVRSGLFLSHVRASTGSCISRNNCHPFA----ARRWCFMHNGQVGG 119
Query: 122 GLTLRKKLISS-----GAIFQSTSDTEVILHLIARSQKNGS----CDRFIDSLRHVQGA- 171
RK+ + + ++D+EV+ L R I L + A
Sbjct: 120 FEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAH 179
Query: 172 -------YAMLALTRTKLIATRDPIGIRPLIMGELHGKP----IFCSETCALEITGAKYI 220
+ L A R + + SE +
Sbjct: 180 GTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEPLETDEGDW--- 236
Query: 221 RDVENGETIVCELQEDGFISID 242
++ G + + +G D
Sbjct: 237 TELRPGRMLT--IGAEGAAERD 256
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 97.5 bits (242), Expect = 7e-21
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 42/178 (23%)
Query: 275 YVSRRNMGKNLA---KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN------ 325
+ RR+ G LA + A +V+ +P GGV A A+ G + ++R
Sbjct: 3 FRDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGN 62
Query: 326 ---------------------HYVGRTFIEPSHH-----IRAFGVKLKHSANRTILAGKR 359
Y ++++E +R + + + G+
Sbjct: 63 PEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRD 122
Query: 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR--VASPMVL-----YPDFYGIDIPDP 410
VVL+DD + G + + ++ G V + VASP + + + +P
Sbjct: 123 VVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASPEAVERLKARAEVVALSVPQD 180
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid,
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 95.3 bits (236), Expect = 3e-20
Identities = 39/222 (17%), Positives = 62/222 (27%), Gaps = 36/222 (16%)
Query: 57 SERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQV---GGIAI 113
R G V S + G + T +V P A +
Sbjct: 20 GGRAPGPVFATR-----GSHTDIDTPQGERSLAAT-LVHAPSVAPDRAVARSLTGAPTTA 73
Query: 114 AHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173
G N L L A D E++L L+ ++ + + R V G +A
Sbjct: 74 VLAGEIYNRDELLSVL---PAGPAPEGDAELVLRLL---ERYD-----LHAFRLVNGRFA 122
Query: 174 MLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCAL---------------EITGAK 218
+ T +++ D G PL G+ +E AL + G
Sbjct: 123 TVVRTGDRVLLATDHAGSVPLYTCVAPGEVRASTEAKALAAHRDPKGFPLADARRVAGLT 182
Query: 219 YIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYV 260
+ V G + + G P S + E V
Sbjct: 183 GVYQVPAGAVMDID-LGSGTAVTHRTWTPGLSRRILPEGEAV 223
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 79.3 bits (195), Expect = 2e-15
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 3/119 (2%)
Query: 278 RRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPF-EQGIIRNHYVGRTFIEPS 336
R + L P A+I+ +P A+ G+P+ Y+ I+
Sbjct: 38 TRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVVAXXXXXPYMEDPIIQEV 97
Query: 337 HHIRAFGVKLKHSANRT--ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393
+ ++ R L +RVVL+ D + G T + +M+ AG V
Sbjct: 98 QTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAV 156
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 76.0 bits (187), Expect = 2e-14
Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 278 RRNMGKNLA---KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIE 334
+ L + + + D V +P +P A + IP G +
Sbjct: 45 LSQVADILFQTAQNAGISFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLV 104
Query: 335 PSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393
I G+ ++I+D + G++ ++ V++++ G V
Sbjct: 105 EGT----------------INPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVL 147
>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics
center for infectious disease, ssgcid, cytoplasm,
magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei
1710B}
Length = 319
Score = 71.0 bits (174), Expect = 5e-13
Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 18/149 (12%)
Query: 294 DIVVPIPD-GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352
D++V PD GGV A AK+ II R +
Sbjct: 167 DLLVVSPDVGGVVRARALAKQLNCDL--AII-------------DKRRPKANVAEVMNII 211
Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTA 412
+ G+ V++DD + T K Q+++ GA +V P++ I
Sbjct: 212 GEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASALDE 271
Query: 413 LLANKCSSPQEMCNFIGVDSLGFLSVDGL 441
L+ + + + LS GL
Sbjct: 272 LVV--TDTIPLSAESLACPKIRALSSAGL 298
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 71.2 bits (173), Expect = 5e-13
Identities = 44/197 (22%), Positives = 65/197 (32%), Gaps = 40/197 (20%)
Query: 15 CGVFGILGHPDAATLTAIGL-HALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73
GVF I A+ L ++HRG + +GI + +
Sbjct: 4 FGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASD---------------------- 41
Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133
N + H R S + QPL+ +A NG N LR +
Sbjct: 42 ------NAILAHERLSIVD--VNAGAQPLYNQQ--KTHVLAVNGEIYNHQALRAEYGD-R 90
Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193
FQ+ SD EVIL L D A+A+ + + RD +GI P
Sbjct: 91 YQFQTGSDCEVILALYQEKGPEFLDD------LQGMFAFALYDSEKDAYLIGRDHLGIIP 144
Query: 194 LIMGELHGKPIFCSETC 210
L MG ++ +
Sbjct: 145 LYMGYDEHGQLYVASEM 161
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 69.1 bits (168), Expect = 2e-12
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 13/123 (10%)
Query: 99 VQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSC 158
Q + G+ N L +D E++ L + G
Sbjct: 43 YQKCEME----RGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLF---TRLG-- 93
Query: 159 DRFIDSLRHVQGAYAMLALTRT-KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGA 217
++L +G + +L + G P+ + + + S G
Sbjct: 94 ---ANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGE 150
Query: 218 KYI 220
+
Sbjct: 151 GAL 153
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural
genomics, PSI, protein structure initative; HET: G4P;
1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Length = 197
Score = 67.3 bits (164), Expect = 8e-12
Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 3/131 (2%)
Query: 266 DSIISGRSIYVSRRNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR 324
DS ++ + + + +G A + +V I G+ A+ + G+P
Sbjct: 26 DSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKH 85
Query: 325 NHYVGRTFIEPS--HHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRS 382
+ + + + + V++IDD + G + +V +++
Sbjct: 86 KSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQ 145
Query: 383 AGASEVHLRVA 393
AGAS + +
Sbjct: 146 AGASIAGIGIV 156
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 49.4 bits (117), Expect = 2e-06
Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 274 IYVSR---RNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG 329
+Y++ LA++ D+++ + GG+ A+ + G +I +
Sbjct: 4 VYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGD-IPLKVIDVKFYK 62
Query: 330 RTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
+ L KRVV++DD G T +++ ++ GA E+
Sbjct: 63 GIDERGEKPVI-------TIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIK 115
Query: 390 LRVA---SPMVLYPDFYGIDIPD 409
+ + PD+Y
Sbjct: 116 IACLAMKPWTSVVPDYYVFRTEK 138
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 47.6 bits (113), Expect = 7e-06
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
++ + GG+ A+E GI + + Y E RA
Sbjct: 30 KGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAE----------- 78
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPD 409
G+ ++IDD + G T+V I +M A + + A + D Y +DIP
Sbjct: 79 -GDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPL--VDDYVVDIPQ 131
>2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm,
magnesium, GMP complex, FLIP peptide-plane,
glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces
cerevisiae} PDB: 2jkz_A*
Length = 213
Score = 47.2 bits (111), Expect = 8e-06
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 13/128 (10%)
Query: 274 IYVSR---RNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPF----EQGIIRN 325
Y+S + + A+ D+++ I GG A P I
Sbjct: 6 QYISYNNVHQLCQVSAERIKNFKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIIL 65
Query: 326 HYVGRTFIEPSHHIRAF-----GVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMI 380
S + + + L GK V+++D+ TT + +
Sbjct: 66 SLYEDLNSVGSEVEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSEL 125
Query: 381 RSAGASEV 388
A +
Sbjct: 126 EKDAAEQA 133
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 45.7 bits (108), Expect = 2e-05
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
VV I G A G+ F + + + + + + R
Sbjct: 55 TKVVGIESRGFILGGIVANSLGVGFVA-LRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQ 113
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
+ V+L DD + G T + +++ +AG
Sbjct: 114 LGPHDVVLLHDDVLATGGTLLAAIELCETAGV 145
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 44.2 bits (104), Expect = 6e-05
Identities = 16/150 (10%), Positives = 45/150 (30%), Gaps = 15/150 (10%)
Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327
+ + I R + L + +++ + G V K
Sbjct: 14 LYNQDDIQKRIRELAAELTEFYEDKNPVMICVLTGAVFFYTDLLKHLDFQ--------LE 65
Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387
++ G +T + G+ V++++D I G T +++ ++ +
Sbjct: 66 PDYIICSSYSGTKSTGNLTISKDLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPAS 125
Query: 388 VHLRV-------ASPMVLYPDFYGIDIPDP 410
+ + + D+ G + +
Sbjct: 126 LKVCTLCDKDIGKKAYDVPIDYCGFVVENR 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.4 bits (102), Expect = 1e-04
Identities = 55/348 (15%), Positives = 94/348 (27%), Gaps = 146/348 (41%)
Query: 101 PLFADLQVGGIAIA-HNGNFTNGLTLRKKLI-----SSG---AIFQSTSDT--------- 142
PL +Q+ + FT G LR L S G A+ + +D+
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 143 ---EVILHLIARSQK---NGSCDRFI--DSLRHVQGAYA-MLA---LTRTKLIATRD--- 187
V+ + R + N S I DSL + +G + ML+ LT+ ++ +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 188 ---P----IGIRPLIMGE-----------LHGKPIFCSETCALEITGAKYIRDVENGETI 229
P + I L+ G L+G +R + +
Sbjct: 358 SHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYG---LNL-----------TLRKAKAPSGL 402
Query: 230 ------------VCELQEDGFISIDSYKNPSTSPERMCIF--EYVY---------FARPD 266
+ F+ + SP F + + +
Sbjct: 403 DQSRIPFSERKLKFSNR---FLPV-------ASP-----FHSHLLVPASDLINKDLVKNN 447
Query: 267 SIISGRS--IYVSRRNMGKNLAKES-PVIADIVVPIPDGGV--PAAIGYAKESGIPFEQG 321
+ + I V G +L S + IV I V +
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF----------- 496
Query: 322 IIRNHYVGRTFIEPSHHIRAFG--------VKLKHSAN----RTILAG 357
+ HI FG V + + R I+AG
Sbjct: 497 -------------KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 41.5 bits (97), Expect = 4e-04
Identities = 75/511 (14%), Positives = 125/511 (24%), Gaps = 233/511 (45%)
Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128
T+P TLS G + + + A F L+++
Sbjct: 6 TRPLTLSH-------GSLEHVLL-------------------VPTAS---FFIASQLQEQ 36
Query: 129 LISS----GAIFQSTSDTEVILHL-------IARSQKNGSCDRFIDSLRHV--------- 168
F + + L ++ + +F L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 169 QG------AYAMLALTRTKLIATRDPIGI--RPLIMGELHGKPIFCSETCALEITGAKYI 220
+G A +L T L+ T++ I IM +P AL
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA---KRPFDKKSNSAL-------F 146
Query: 221 RDVE--------------NGETIVCELQE-----DGFIS--IDS----YKNPSTSPERMC 255
R V N + EL++ + I +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-- 204
Query: 256 IFEYVY---F----------ARPDS--IISGRSIYVSRRNMGKNLAKESPVIADIVVPIP 300
E V+ PD ++S P+ P+
Sbjct: 205 -AEKVFTQGLNILEWLENPSNTPDKDYLLS------------------IPI----SCPL- 240
Query: 301 DGGVPAAIG------YA---KESGI-PFEQGIIRNHYVGRT------------------- 331
IG Y K G P G +R++ G T
Sbjct: 241 -------IGVIQLAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 332 -FIEPSHHIRA----F--GVKLKHSANRTILAGKRVVLIDDSI--VRGTTSVKIVQM--I 380
F +A F GV+ + T L +++DS+ G S M I
Sbjct: 291 SFFVSVR--KAITVLFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPS----PMLSI 341
Query: 381 RSAGASEV---------HLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVD 431
+ +V HL P ++I L N + N +
Sbjct: 342 SNLTQEQVQDYVNKTNSHL---------PAGKQVEIS-----LVN---GAK---NLV--- 378
Query: 432 SLGFLSVDGLYNAICGIP---RDPQNPAFAD 459
V G ++ G+ R + P+ D
Sbjct: 379 ------VSGPPQSLYGLNLTLRKAKAPSGLD 403
Score = 39.9 bits (93), Expect = 0.001
Identities = 43/207 (20%), Positives = 67/207 (32%), Gaps = 70/207 (33%)
Query: 24 PDAATLT--AIGLHALQH--RGQEA-TGIISFNGNKF-HSERHLGLVGDHFTKPE-TLSL 76
++ L+ L R +A +G+ + ++ SER K + +
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGL---DQSRIPFSER----------KLKFSNRF 420
Query: 77 LPGNMAIG---HVRY-STTGDQII-----RNVQPLFADLQVGGIAIAHNGNFTNGLTLRK 127
LP + H D I NV D+Q I + +G LR
Sbjct: 421 LP----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ---IPVYDT---FDGSDLRV 470
Query: 128 KLISSGAIFQSTSDTEVILHLIARSQKNGSCD-----RFIDSLRHV----QGAYAML-AL 177
SG+I +E I+ I R +F H+ G + L L
Sbjct: 471 ---LSGSI------SERIVDCIIRLP----VKWETTTQF--KATHILDFGPGGASGLGVL 515
Query: 178 T-RTKLIATRDPIGIRPLIMGELHGKP 203
T R K D G+R ++ G L P
Sbjct: 516 THRNK-----DGTGVRVIVAGTLDINP 537
Score = 28.8 bits (64), Expect = 2.9
Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 34/206 (16%)
Query: 167 HVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCAL-------EITGAKY 219
H + Y L I +P+ + GE GK I + + + ++ K
Sbjct: 1652 HFKDTYGFSILD----IVINNPVNLTIHFGGE-KGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 220 IRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVY---FARPDSIISGRSI-- 274
+++ T E G +S + P+ + FE + D+ +G S+
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 275 YVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIE 334
Y + ++ ++ ES + ++V G + +P ++ + R++Y G I
Sbjct: 1767 YAALASLADVMSIES--LVEVVF---------YRGMTMQVAVPRDE-LGRSNY-GMIAIN 1813
Query: 335 PSHHIRAFGVK-LKHSANRTILAGKR 359
P +F + L++ R GKR
Sbjct: 1814 PGRVAASFSQEALQYVVERV---GKR 1836
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 41.5 bits (97), Expect = 4e-04
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 2/109 (1%)
Query: 283 KNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSH--HIR 340
+ ++ G A E IPF + G + +
Sbjct: 62 VQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYK 121
Query: 341 AFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
++ +I G RVVLIDD + G T++ +Q++ ++ A V
Sbjct: 122 EAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVE 170
>1j7j_A HPRT, hypoxanthine phosphoribosyltransferase; glycosyltransferase,
nucleotide metabolism, purine salvage; 2.30A {Salmonella
typhimurium} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A
Length = 178
Score = 41.4 bits (97), Expect = 4e-04
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 13/121 (10%)
Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354
++V + G +E +P E + + + + ++
Sbjct: 37 VLVGLLRGSFMFMADLCREVQVPHEVDFM-TASSYGSGMSTTRDVK------ILKDLDED 89
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408
+ GK V++++D I G T K+ +++ + + + + +F G IP
Sbjct: 90 IRGKDVLIVEDIIDSGNTLSKVREILGLREPKSLAICTLLDKPSRREVDVPVEFVGFSIP 149
Query: 409 D 409
D
Sbjct: 150 D 150
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, salvage of nucleosides and
nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Length = 186
Score = 41.4 bits (97), Expect = 5e-04
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 15/122 (12%)
Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
+V+ + G A + I + Y +T G
Sbjct: 39 VVIAVLKGSFVFAADLIRHIKNDVTIDFISASSYGNQT--------ETTGKVKLLKDIDV 90
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDI 407
+ GK V++++D I G T + + + L ++ G I
Sbjct: 91 NITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDKPERRKVDLTAEYVGFQI 150
Query: 408 PD 409
PD
Sbjct: 151 PD 152
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Length = 211
Score = 40.7 bits (95), Expect = 7e-04
Identities = 14/134 (10%), Positives = 45/134 (33%), Gaps = 13/134 (9%)
Query: 282 GKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRA 341
+L ++P+ ++ + G A+ + E ++ ++ +
Sbjct: 50 DFHLTADNPLY---LLCVLKGSFIFTADLARF--LADEGVPVKVEFICASSYGSGVETS- 103
Query: 342 FGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASP 395
G R + + ++L++D + T +++ + + + +
Sbjct: 104 -GQVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRK 162
Query: 396 MVLYPDFYGIDIPD 409
+ + D+ I IP
Sbjct: 163 VDVLVDYPVITIPR 176
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2,
protein structure initiative, NE SGX research center for
structural genomics; 2.04A {Vibrio cholerae} PDB:
1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Length = 177
Score = 40.6 bits (95), Expect = 7e-04
Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354
++V + G A++ + + + G + +++
Sbjct: 36 VLVGLLRGSFVFMADLARQIHLTHQVDFMTASSYG-------NSMQSSRDVRILKDLDDD 88
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408
+ GK V+L++D I G T K+ +++ + + + + ++ G +IP
Sbjct: 89 IKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICTLLDKPTRREVDVEVNWVGFEIP 148
Query: 409 D 409
D
Sbjct: 149 D 149
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine
phosphoribosyltransferase, 2-(N-
morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A
{Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 40.3 bits (94), Expect = 9e-04
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 17/150 (11%)
Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327
+IS I +G +A++ + + + G +P K + E +
Sbjct: 34 LISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSS 93
Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387
G H + G T + G+ +++++D I G T +V + + A
Sbjct: 94 YG-------HSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKS 146
Query: 388 VHLRVASPMVLY--------PDFYGIDIPD 409
V + + + D+ G +P
Sbjct: 147 VK--IVTLLDKPTGRKVDLKADYVGFTVPH 174
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP:
c.61.1.1
Length = 201
Score = 40.4 bits (94), Expect = 0.001
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354
+++ IP GV A A + + + + T I+ S
Sbjct: 51 VLLGIPTRGVTLANRLAGNI-TEYSGIHVGHGALDITLYRDDLMIKPPRPLASTSIPAGG 109
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHL-----RVASPMVLYPDFYGIDIP 408
+ V+L+DD + G + + +R G V L R + L D+ G ++P
Sbjct: 110 IDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAVLVDRGHRELPLRADYVGKNVP 169
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
complex; HET: IMP; 2.20A {Thermoanaerobacter
tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A*
Length = 205
Score = 38.8 bits (90), Expect = 0.003
Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354
+++ + G + G ++ +P + + + S G+ +
Sbjct: 63 VLIGVLKGAIMFMSGLSRAIDLPLSIDFLA-VSSYGSSTKSS------GIVKIIKDHDID 115
Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408
+ GK V++++D I G T + + + + + + D+ G IP
Sbjct: 116 IEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIP 175
Query: 409 DP 410
D
Sbjct: 176 DK 177
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
{Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A*
1qk4_A* 1qk5_A* 1dbr_A
Length = 233
Score = 37.6 bits (87), Expect = 0.006
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 10/126 (7%)
Query: 295 IVVPIPDGGVPAAIGYAKE----SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSA 350
++ I G + + + ++ + + G S
Sbjct: 76 HIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVRLKSYQNDNSTGQLTVLSD 135
Query: 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYG 404
+ +I K V++++D + G T + + +++ G + + R L DF G
Sbjct: 136 DLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVG 195
Query: 405 IDIPDP 410
I D
Sbjct: 196 FSIEDV 201
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 37.7 bits (87), Expect = 0.007
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396
+ G +V I + T +++++++S G E+ ++V S +
Sbjct: 58 SVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, magnesium, pyrimidine biosynthesis;
2.40A {Streptococcus mutans}
Length = 243
Score = 37.3 bits (86), Expect = 0.008
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 279 RNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHH 338
N KE+ +++ G+P A + +P +P H
Sbjct: 87 ENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPL----------AYIRSKPKDH 136
Query: 339 IRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
++ + G+++V+I+D I G + + V + GA +
Sbjct: 137 GAGNQIE------GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLG 181
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
thermophilus} PDB: 2ywt_A* 2yws_A*
Length = 181
Score = 37.3 bits (86), Expect = 0.008
Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 13/148 (8%)
Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327
IS +I +G +A++ ++ + +G + +P I
Sbjct: 13 QISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISS 72
Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387
G F R + G+ V++++D + G T ++ + + +
Sbjct: 73 YGNAFKSSGEVEL-------LKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPAS 125
Query: 388 VHL------RVASPMVLYPDFYGIDIPD 409
V + + + + G +I D
Sbjct: 126 VRVAALLSKPSRRQVEVPIHYLGFEIED 153
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase);
transferase,phosphoribosyltransferase, purine salvage,
nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma
cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A*
1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Length = 220
Score = 36.9 bits (85), Expect = 0.011
Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 276 VSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEP 335
++ GK L + +++ + G + + V
Sbjct: 28 IADDYKGKGLRPYVNPL--VLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSYGEGL 85
Query: 336 SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL----- 390
+ + R + G V++++D + T + M + + +
Sbjct: 86 TSSGQVR----MLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLD 141
Query: 391 -RVASPMVLYPDFYGIDIPD 409
R + D+ +IP+
Sbjct: 142 KREGRRVPFSADYVVANIPN 161
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 36.5 bits (84), Expect = 0.013
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 287 KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKL 346
KE +++ G+ A + +P + G+
Sbjct: 83 KEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVRSKAKGHGKGNQIEGK--------- 133
Query: 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
G++VV+++D I G +++ V+ +R AG +
Sbjct: 134 -------AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLG 169
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 36.2 bits (83), Expect = 0.017
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 2/92 (2%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
D +V + G A G+ F G F +
Sbjct: 61 DYIVGLESRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQ--KNA 118
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
I AG V+++DD I G ++ +++ A
Sbjct: 119 IPAGSNVIIVDDIIATGGSAAAAGELVEQLEA 150
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding protein,
pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Length = 181
Score = 36.2 bits (83), Expect = 0.017
Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 8/149 (5%)
Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIV-VPIPDGGVPAAIGYAKESGIPFEQGIIRNH 326
I+ ++I + + + + + + + + V I G+ A A+ +
Sbjct: 7 ILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGE 66
Query: 327 -YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG- 384
+ + S +K + + ++V+L+DD + G T + + G
Sbjct: 67 IDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGR 126
Query: 385 ASEVHL-----RVASPMVLYPDFYGIDIP 408
S + L R + + D+ G +IP
Sbjct: 127 PSSIQLAVLVDRGHRELPIRADYIGKNIP 155
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 34.9 bits (80), Expect = 0.037
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 24/78 (30%)
Query: 183 IATRDPIGIRPLIMGE----LHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGF 238
+ TR+ I R G L+ C E C + K + G+ +VC G
Sbjct: 1 MMTRESIDKRA---GRRGPNLNIVLT-CPE-CK--VYPPKIVERFSEGD-VVC--ALCGL 50
Query: 239 I----SIDSYKNPSTSPE 252
+ +D T E
Sbjct: 51 VLSDKLVD------TRSE 62
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 34.7 bits (79), Expect = 0.042
Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 16/112 (14%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
++V A +A+ + ++ H +
Sbjct: 193 AVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLE 252
Query: 354 I----------------LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
I + G+ +++DD I + + + ++ GA ++
Sbjct: 253 IPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIF 304
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 34.6 bits (79), Expect = 0.046
Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 9/126 (7%)
Query: 270 SGR--SIYVSRR--NMGKNLAKESPVIADIVVPIPDGGVPA-AIGYAKESGIPFEQGIIR 324
SGR + + N G++LA+ + + D G+ + GIP
Sbjct: 52 SGRKSPYFFNAGLFNTGRDLAR---LGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAV 108
Query: 325 NHYVGRTFIEPSHHIRAFGVKL-KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA 383
P R + RV+L+DD I GT + +++I++
Sbjct: 109 ALADHHDVDTPYCFNRKEAKNHGEGGNLVGSKLEGRVMLVDDVITAGTAIRESMELIQAN 168
Query: 384 GASEVH 389
A
Sbjct: 169 KADLAG 174
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A {Thermoanaerobacter
tengcongensis}
Length = 185
Score = 34.6 bits (79), Expect = 0.052
Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327
+I+ + + +G+ + ++ +++ + G + G ++ +P +
Sbjct: 16 LITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSS 75
Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG--- 384
G ++ G+ + + GK V++++D I G T + + +
Sbjct: 76 YG-------SSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRS 128
Query: 385 ---ASEVHLRVASPMVLYPDFYGIDIPD 409
+ + + D+ G IPD
Sbjct: 129 LKICTILDKPERREADVKVDYCGFKIPD 156
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 34.6 bits (79), Expect = 0.057
Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 294 DIVVPIPD-GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352
DIV+ PD GGV A A P II E + +
Sbjct: 168 DIVIVSPDHGGVTRARKLADRLKAPI--AIIDKRRPRPNVAEVMNIVGN----------- 214
Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396
+ GK +LIDD I T + GA EV+ P+
Sbjct: 215 --IEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPV 256
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 33.8 bits (77), Expect = 0.078
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 22/130 (16%)
Query: 295 IVVPIPDGGVPAA---------IGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVK 345
+ + + GG + + IP IR +
Sbjct: 62 VALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVI----- 116
Query: 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLY 399
+ + L GK V++++D I G T ++ ++R V + R +
Sbjct: 117 --GGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYK 174
Query: 400 PDFYGIDIPD 409
PDF G +IPD
Sbjct: 175 PDFVGFEIPD 184
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 33.8 bits (77), Expect = 0.079
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 287 KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKL 346
+S + D++ G+P A A ++ + P R
Sbjct: 58 VDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDL------------PYCFNRKEAKDH 105
Query: 347 KHSANRT-ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
+ RV+L+DD I GT + +++I++ GA
Sbjct: 106 GEGGSLVGSALQGRVMLVDDVITAGTAIRESMEIIQAHGA 145
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo
sapiens} SCOP: c.72.3.1
Length = 313
Score = 33.6 bits (76), Expect = 0.10
Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 22/113 (19%)
Query: 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLI---------DDSIVR------- 369
V F +P + + A R G+RVVL+ + VR
Sbjct: 7 DPVAE-FPQP-PGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSS 64
Query: 370 GTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQ 422
G + +AG V + +P Y P T L A + S P
Sbjct: 65 GRRGATSAEAFLAAGY-GVLF-LYRARSAFP--YAHRFPPQTWLSALRPSGPA 113
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 33.1 bits (75), Expect = 0.16
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 270 SGR--SIYVSRR--NMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN 325
SGR + + N G LA + A +++ D G A + GIP I
Sbjct: 45 SGRISPYFFNAGLFNTGAQLATLADYYAQLIIK-SDVKYDILFGPAYK-GIPLVAAISTV 102
Query: 326 HYVGRTFIEPSHHIRAFGVK--LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA 383
+ P R + K+V+LIDD + GT + ++
Sbjct: 103 LALKYNIDMPYAFDRKEAKDHGEGGVFVGADMTNKKVLLIDDVMTAGTAFYESYNKLKII 162
Query: 384 GA 385
A
Sbjct: 163 NA 164
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide
biosynthesis, transcriptional attenuation, RNA-binding
protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Length = 181
Score = 32.8 bits (74), Expect = 0.16
Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 6/147 (4%)
Query: 268 IISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHY 327
+++ + + + + + + + + FE +
Sbjct: 7 LMNAPEMRRALYRIAHEIVEANKGTEGLALVGIHTRGIPLAHRIARFIAEFEGKEVPVGV 66
Query: 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-AS 386
+ T + +++ + L GK +VL+DD + G T+ + + G
Sbjct: 67 LDITLYRDDLTEIGYRPQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPR 126
Query: 387 EVHL-----RVASPMVLYPDFYGIDIP 408
++L R + + DF G ++P
Sbjct: 127 RIYLAVLVDRGHRELPIRADFVGKNVP 153
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 32.0 bits (72), Expect = 0.30
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396
+ G +V I + T +++++++S G EV ++V S +
Sbjct: 50 SLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 31.9 bits (73), Expect = 0.31
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
+L G RV+ I+ V ++V+++R +G + V L V
Sbjct: 44 LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLV 81
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 31.6 bits (72), Expect = 0.41
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395
+ A R+V ++ + G +V IR+ G E L V
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 31.4 bits (71), Expect = 0.41
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173
+S+ T + L +IA +Q+ G FID+ + YA
Sbjct: 1091 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 1127
Score = 30.2 bits (68), Expect = 1.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173
+S+ T + L +IA +Q+ G FID+ + YA
Sbjct: 392 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 428
Score = 27.9 bits (62), Expect = 4.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173
+S+ T + L +IA +Q+ G FID+ + YA
Sbjct: 43 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 79
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
polymorphism, purine salvage; HET: AMP; 1.76A {Homo
sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 31.2 bits (70), Expect = 0.50
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
D + + G A+E G+ R G T + +G
Sbjct: 59 DYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWA--SYSLEYGKAELEIQKDA 116
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
+ G+RVV++DD + G T +++ A
Sbjct: 117 LEPGQRVVVVDDLLATGGTMNAACELLGRLQA 148
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 31.3 bits (70), Expect = 0.53
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 336 SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
R +++ + + V ++DD I G T V++++ GA ++
Sbjct: 184 LEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKII 237
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 31.1 bits (70), Expect = 0.53
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173
+S+ T + L +IA +Q+ G FID+ + YA
Sbjct: 1436 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 1472
>2jbh_A HHGP; glycosyltransferase, PRTFDC1, transferase, purine salvage;
HET: 5GP; 1.7A {Homo sapiens}
Length = 225
Score = 31.1 bits (70), Expect = 0.59
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 22/130 (16%)
Query: 295 IVVPIPDGGVP---------AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVK 345
+V+ + GG I + + + IR I
Sbjct: 70 MVLCVLKGGYKFXADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGEMQIIGGDDL 129
Query: 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG------ASEVHLRVASPMVLY 399
+ GK V++++D + G T ++ I AS + R +
Sbjct: 130 STLA-------GKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFR 182
Query: 400 PDFYGIDIPD 409
PD+ G +IP+
Sbjct: 183 PDYAGFEIPN 192
>1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria,
purine salvage, transition state inhibitor; HET: IRP;
2.00A {Plasmodium falciparum} SCOP: c.61.1.1
Length = 231
Score = 31.1 bits (70), Expect = 0.61
Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 19/144 (13%)
Query: 276 VSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNH-YVGRTFIE 334
+ + + ++ + G K + +
Sbjct: 61 IKKVYNNEEF---------HILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYV 111
Query: 335 PSHHIRAFGVKLKHSANRTILA---GKRVVLIDDSIVRGTTSVKIVQMIRSAG------A 385
L+ GK V++++D I G T VK + ++ A
Sbjct: 112 RVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIA 171
Query: 386 SEVHLRVASPMVLYPDFYGIDIPD 409
R DF G IPD
Sbjct: 172 CLFIKRTPLWNGFKADFVGFSIPD 195
>2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics; 2.44A {Corynebacterium diphtheriae NCTC13129}
Length = 180
Score = 30.9 bits (69), Expect = 0.64
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 7/123 (5%)
Query: 270 SGR--SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYA-KESGIPFEQGIIRNH 326
SG+ YV R + + + D A G +
Sbjct: 28 SGKEADYYVDLRRATLHARASRLIGELLRELTADWDYVAVGGLTLGADPVATSVMHADGR 87
Query: 327 YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386
+ + + + GK+V++++D+ G + + V+ +R AGA
Sbjct: 88 EIHAFVVRKEAKKHGM----QRRIEGPDVVGKKVLVVEDTTTTGNSPLTAVKALREAGAE 143
Query: 387 EVH 389
V
Sbjct: 144 VVG 146
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A
Length = 99
Score = 30.6 bits (69), Expect = 0.79
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395
+ AG + I+ V G + +V+++ +G +++ LR +
Sbjct: 48 QEAGLRAGDLITHINGESVLGLVHMDVVELLLKSG-NKISLRTTAL 92
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 3dj3_A
Length = 139
Score = 30.4 bits (68), Expect = 0.81
Identities = 5/43 (11%), Positives = 15/43 (34%)
Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
+ G +++ ++ + T + + + V L V
Sbjct: 78 EIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 120
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 29.7 bits (67), Expect = 1.3
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
+L + I+ V G +I ++ ++G + V + +
Sbjct: 41 LLTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITI 78
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 29.6 bits (67), Expect = 1.6
Identities = 5/39 (12%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
+ G +++ ++ +R + + +++AG V +
Sbjct: 54 LRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIA 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.6 bits (65), Expect = 1.8
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 94 QIIRNVQP---LFADLQVGGIAI 113
Q ++ +Q L+AD +AI
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase,
glycosidase, glycoside hydrolase family 26; HET: BGC
NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB:
2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A*
Length = 283
Score = 29.3 bits (65), Expect = 2.1
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 200 HGKPIFCSETCALEITGAK--YIRDV 223
KPI +E + EI G K +I +
Sbjct: 214 INKPIIIAEFASAEIGGNKARWITEA 239
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 29.1 bits (65), Expect = 2.2
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394
+L G R+V +++ + T+ + V+++++ VHL + S
Sbjct: 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 29.0 bits (65), Expect = 2.3
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
+ G R++ ++ VR +T ++ +I+ A ++ L +
Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKEAD-FKIELEI 93
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.25A {Escherichia coli K12}
Length = 190
Score = 28.8 bits (64), Expect = 2.5
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353
VV G A G+ F +R + +G
Sbjct: 65 TKVVGTEARGFLFGAPVALGLGVGFV--PVRKPGKLPRETISETYDLEYGTDQLEIHVDA 122
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
I G +V+++DD + G T V++IR G
Sbjct: 123 IKPGDKVLVVDDLLATGGTIEATVKLIRRLGG 154
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 29.1 bits (65), Expect = 2.7
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393
T+ AG + ++ ++G T V++ +MI+ EV +
Sbjct: 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYN 102
>2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1,
phosphoribosyl pyrophosphate synthetase 1, transferase;
2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A
Length = 326
Score = 28.5 bits (63), Expect = 3.2
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTI-------LAGKRVVLIDDSIVRGTTSVKIVQ 378
+ + + A K + AN + + +L+DD T
Sbjct: 175 AKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAAD 234
Query: 379 MIRSAGASEVHLRVASPM 396
+ SAGA+ V+ + +
Sbjct: 235 KLLSAGATRVYAILTHGI 252
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genomics consortium,
SGC, transferase; 2.55A {Homo sapiens}
Length = 418
Score = 28.5 bits (63), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 21 LGHPDAAT---LTAIGLHALQHRGQEATGIIS 49
LGHP T L+ L+ RG+ A G++S
Sbjct: 369 LGHPLGCTGARQVITLLNELKRRGKRAYGVVS 400
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 2ka9_A
Length = 196
Score = 28.4 bits (63), Expect = 4.1
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395
+ G +++ ++ + V +++ V+L+VA P
Sbjct: 149 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKP 189
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 28.3 bits (63), Expect = 4.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 21 LGHPDAAT---LTAIGLHALQHRGQEAT-GIIS 49
+GHP AT A LH ++ RG++ G++S
Sbjct: 371 IGHPLGATGARCVATLLHEMKRRGKDCRFGVVS 403
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, sugar binding protein;
HET: NAG; 2.00A {Lotus tetragonolobus}
Length = 234
Score = 28.1 bits (62), Expect = 4.7
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 48 ISFNGNKFHSERHLGLVGD-HFTKPETLSLLPG---NMAIGHVRYST 90
+SFN +F + L GD L++ N H Y+T
Sbjct: 1 VSFNYTRFKDDGSLIFQGDAKIWTDGRLAMPTDPLVNRTTSHALYAT 47
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 27.9 bits (61), Expect = 5.4
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
TI G R++ +D + GTT + + +++ G E L +
Sbjct: 151 EGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEATLLI 191
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; transferase, structural genomics, structural
genomics consortium, SGC; HET: HIS; 2.05A {Homo sapiens}
Length = 112
Score = 28.0 bits (62), Expect = 5.5
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395
G ++ I+ + + +++I++ G V L +
Sbjct: 70 IGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRG 108
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 27.8 bits (61), Expect = 5.6
Identities = 8/39 (20%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
+ G R++ ++ V G T +++ +I+++ + + L V
Sbjct: 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSD-TTLELSV 116
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A
Length = 105
Score = 27.6 bits (61), Expect = 6.6
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLY 399
+++ ++ + T + V +++ V+L+VA P +Y
Sbjct: 57 KLLAVNSVSLEEVTHEEAVTALKNTS-DFVYLKVAKPTSMY 96
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 27.5 bits (61), Expect = 6.8
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
+ G +V I+ + IR + S + L++
Sbjct: 44 EAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQL 85
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 27.5 bits (61), Expect = 7.2
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395
I G R++ I+ S ++G + + +++ AG V L++
Sbjct: 49 IHIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQ 89
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 27.2 bits (60), Expect = 8.5
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395
+ G +++ ++ + G T + V +++ V L V S
Sbjct: 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSS 112
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,264,546
Number of extensions: 204320
Number of successful extensions: 707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 97
Length of query: 488
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 392
Effective length of database: 3,365,806
Effective search space: 1319395952
Effective search space used: 1319395952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)