BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (488 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 488

 Score = 1003 bits (2594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/488 (100%), Positives = 488/488 (100%)

Query: 1   MCSKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERH 60
           MCSKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERH
Sbjct: 1   MCSKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERH 60

Query: 61  LGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT 120
           LGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT
Sbjct: 61  LGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT 120

Query: 121 NGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT 180
           NGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT
Sbjct: 121 NGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT 180

Query: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFIS 240
           KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFIS
Sbjct: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFIS 240

Query: 241 IDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIP 300
           IDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIP
Sbjct: 241 IDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIP 300

Query: 301 DGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360
           DGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV
Sbjct: 301 DGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360

Query: 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSS 420
           VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSS
Sbjct: 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSS 420

Query: 421 PQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDE 480
           PQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDE
Sbjct: 421 PQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDE 480

Query: 481 ELSLIISS 488
           ELSLIISS
Sbjct: 481 ELSLIISS 488


>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 608

 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 17/216 (7%)

Query: 15  CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
           CG+ GI+G           L  L++RG +++G+ +    K    R  G + +   K    
Sbjct: 2   CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSE-LEKELNK 60

Query: 75  SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134
             L GN+ I H R++T G     N  P   +    GIA+ HNG   N   L+K+  SS  
Sbjct: 61  KPLKGNIGIAHTRWATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRLKKEHFSSQQ 116

Query: 135 IFQSTSDTEVILHLIARSQKNGSCDR--FIDSLRHVQGAYAMLALTR----TKLIATRDP 188
           +F + +DTEVI  L+ +  KNGS  +      ++ + G+Y++  +      + ++A + P
Sbjct: 117 VFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGP 176

Query: 189 IGIRPLIMGELHGKPIFCSETCALEITGAK--YIRD 222
               PLI+G   G+    S+  AL +   K  Y+ D
Sbjct: 177 ----PLIIGHGEGEMFVGSDVTALTLLTDKVTYMED 208


>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 29.6 bits (65), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173
           +S+  T + LH IA+SQK G    F+D+   +   YA
Sbjct: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112


>gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 59

 Score = 24.6 bits (52), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390
           +AG +++LIDD    G T+      ++ AGA  V +
Sbjct: 15  VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 320,592
Number of Sequences: 1233
Number of extensions: 13753
Number of successful extensions: 35
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 6
length of query: 488
length of database: 328,796
effective HSP length: 78
effective length of query: 410
effective length of database: 232,622
effective search space: 95375020
effective search space used: 95375020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)