HHsearch alignment for GI: 254780337 and conserved domain: CHL00194
>CHL00194 ycf39 Ycf39; Provisional.
Probab=99.36 E-value=5.3e-10 Score=87.03 Aligned_cols=197 Identities=14% Similarity=0.095 Sum_probs=135.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99993899868899999999889989999789899999999998649928999878999999999999999981898799
Q gi|254780337|r 20 LALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDIL 99 (257)
Q Consensus 20 ~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDil 99 (257)
T Consensus 2 ~ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~----~~G--ve~v~gDl~dpesl~~Al~-------GvdaV 68 (319)
T CHL00194 2 SLLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKAAFLK----EWG--AELVYGDLSLPETIPPALE-------GITAI 68 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----HCC--CEEEEECCCCHHHHHHHHC-------CCCEE
T ss_conf 7999899858999999999968890899957867632342----159--6799942788778999965-------99679
Q ss_pred EECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 87687588888867659999999999998999999999999998608986999788356478898368898999999999
Q gi|254780337|r 100 IANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALA 179 (257)
Q Consensus 100 VNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~~~~~~~Y~asKaal~~lt 179 (257)
T Consensus 69 i~~~~~-~~-~~~~--------~~~~vd~~g~~~li----~AAk~aGVkr~V~lS~lga~~-~-~~~p~~~~K~~~E~~- 131 (319)
T CHL00194 69 IDASTS-RP-SDLN--------NAYQIDLEGKLALI----EAAKAAKVKRFIFFSILNAEQ-Y-PQVPLMKIKSDIEEK- 131 (319)
T ss_pred EEECCC-CC-CCCC--------HHHHHHHHHHHHHH----HHHHHCCCCEEEEECCCCCCC-C-CCCHHHHHHHHHHHH-
T ss_conf 994566-77-8862--------08898898899999----999984998899961356666-8-875677879999999-
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCHHHHH----HCCCC------C--CCCCCCHHHHHHHHHHHHCHHHCCCCCEEEECC
Q ss_conf 99999854438699755328837977984----41444------3--245888899999999961975626685798768
Q gi|254780337|r 180 RTWSKETVNTALRVINIDPGPTRTSMRAK----AMPAE------D--PNTVPHPQKVAKIISFLCATQKIETGKLFSVPQ 247 (257)
Q Consensus 180 ~~la~E~~~~gIrvn~I~PG~v~T~m~~~----~~~~~------~--~~~~~~pediA~~v~fL~s~~~~~tG~~~~vdg 247 (257)
T Consensus 132 ------L~~Sgl~~TIlRPs~F~q~l~~~~a~pi~~~~~v~~~~~~~~ia~I~~~DVA~~~a~aL~~~~-~~gk~y~L~G 204 (319)
T CHL00194 132 ------LKQSGINYTIFRLAGFFQGLISQYAIPILDSQTIWITGESTPIAYIDTQDAAKFALKSLSLPE-TKNKTFPLVG 204 (319)
T ss_pred ------HHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEEC
T ss_conf ------986799859984739999889987677630785776699875288779999999999958977-5898999549
Q ss_pred CCEECC
Q ss_conf 763154
Q gi|254780337|r 248 NRFVNY 253 (257)
Q Consensus 248 G~~~n~ 253 (257)
T Consensus 205 P~a~T~ 210 (319)
T CHL00194 205 PKSWNS 210 (319)
T ss_pred CCCCCH
T ss_conf 863899