HHsearch alignment for GI: 254780337 and conserved domain: COG1089
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].
Probab=98.34 E-value=4.7e-06 Score=60.65 Aligned_cols=216 Identities=16% Similarity=0.101 Sum_probs=139.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 899999389986889999999988998999978989999----9999998649928999878999999999999999981
Q gi|254780337|r 18 NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLE----KLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRW 93 (257)
Q Consensus 18 ~K~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~----~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 93 (257)
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v---- 77 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV---- 77 (345)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHC----
T ss_conf 7269995445875389999998569489878603355776530111165557861799965543568899999860----
Q ss_pred CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH--HHCC---------CC
Q ss_conf 898799876875888888676599999999999989999999999999986089869997883--5647---------88
Q gi|254780337|r 94 GKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSG--AAYK---------CR 162 (257)
Q Consensus 94 g~iDilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~--~g~~---------~~ 162 (257)
T Consensus 78 -~PdEIYNLaAQ-S~V----~vSFe~P~~T~~~~~iGtlrlL-EaiR~~~-~~~~rfYQAStSE~fG~v~~~pq~E~TPF 149 (345)
T COG1089 78 -QPDEIYNLAAQ-SHV----GVSFEQPEYTADVDAIGTLRLL-EAIRILG-EKKTRFYQASTSELYGLVQEIPQKETTPF 149 (345)
T ss_pred -CCHHHEECCCC-CCC----CCCCCCCCEEEEECHHHHHHHH-HHHHHHC-CCCCEEEECCCHHHHCCCCCCCCCCCCCC
T ss_conf -94453303432-345----5303586402531006788999-9999748-76607996561776067666754468999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---HHCCEEEEECCCCCCCHHHHH-------HC---------C-CCCCCCCCCHH
Q ss_conf 9836889899999999999999854---438699755328837977984-------41---------4-44324588889
Q gi|254780337|r 163 PLWGAYSASKAAIEALARTWSKETV---NTALRVINIDPGPTRTSMRAK-------AM---------P-AEDPNTVPHPQ 222 (257)
Q Consensus 163 ~~~~~Y~asKaal~~lt~~la~E~~---~~gIrvn~I~PG~v~T~m~~~-------~~---------~-~~~~~~~~~pe 222 (257)
T Consensus 150 yPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~ 229 (345)
T COG1089 150 YPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAK 229 (345)
T ss_pred CCCCHHHHHHHHHHHEEEEHHHHCCCEEECCEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHH
T ss_conf 88977889998777603014763473343114433789877531033899999999870661268743633102343167
Q ss_pred HHHHHHHHHHCH---HHC--CCCCEEEE
Q ss_conf 999999996197---562--66857987
Q gi|254780337|r 223 KVAKIISFLCAT---QKI--ETGKLFSV 245 (257)
Q Consensus 223 diA~~v~fL~s~---~~~--~tG~~~~v 245 (257)
T Consensus 230 DYVe~mwlmLQq~~PddyViATg~t~sV 257 (345)
T COG1089 230 DYVEAMWLMLQQEEPDDYVIATGETHSV 257 (345)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCEEEH
T ss_conf 8999999997447998448852752239