HHsearch alignment for GI: 254780337 and conserved domain: PRK09009
>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=100.00 E-value=0 Score=345.72 Aligned_cols=221 Identities=21% Similarity=0.282 Sum_probs=191.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99993899868899999999889989999789899999999998649928999878999999999999999981898799
Q gi|254780337|r 20 LALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDIL 99 (257)
Q Consensus 20 ~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDil 99 (257)
T Consensus 2 nVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~------~~~~~~v~~~~~Dvt~~~~i~~~~----~~~~~iD~l 71 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKP------DFRHDNVQWHALDVTDEAEIKQLS----EQFTQLDWL 71 (235)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC------CCCCCCEEEEECCCCCHHHHHHHH----HHHCCCCEE
T ss_conf 7999755639999999999856998099997377654------445798389987479999999999----870877899
Q ss_pred EECCCCCC-----CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCC---CCCCCHHHHHH
Q ss_conf 87687588-----88886765999999999999899999999999999860898699978835647---88983688989
Q gi|254780337|r 100 IANAGILG-----SISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYK---CRPLWGAYSAS 171 (257)
Q Consensus 100 VNNAGi~~-----~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~---~~~~~~~Y~as 171 (257)
T Consensus 72 innAGi~~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~g~i~~~~~~g~~~Y~aS 151 (235)
T PRK09009 72 INCVGMLHTQDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKVGSISDNRLGGWYSYRAS 151 (235)
T ss_pred EECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 97675244677776468677899999999988619999999999999986078764012223415778888862366999
Q ss_pred HHHHHHHHHHHHHHHHHH--CCEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHH-HCCCCCEEEECCC
Q ss_conf 999999999999985443--8699755328837977984414443245888899999999961975-6266857987687
Q gi|254780337|r 172 KAAIEALARTWSKETVNT--ALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQ-KIETGKLFSVPQN 248 (257)
Q Consensus 172 Kaal~~lt~~la~E~~~~--gIrvn~I~PG~v~T~m~~~~~~~~~~~~~~~pediA~~v~fL~s~~-~~~tG~~~~vdgG 248 (257)
T Consensus 152 KaAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~m~~~~~~~~p~~r~~~PeeiA~~i~~L~s~~s~~~tG~~i~vdG~ 231 (235)
T PRK09009 152 KAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTPLSKPFQQNVPKGKLFTPEYVAQCLLGIIANATPAQSGSFLAYDGE 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCC
T ss_conf 99999999999999764269968999814865671230678579988882999999999999716972369888978977
Q ss_pred CE
Q ss_conf 63
Q gi|254780337|r 249 RF 250 (257)
Q Consensus 249 ~~ 250 (257)
T Consensus 232 ~~ 233 (235)
T PRK09009 232 EL 233 (235)
T ss_pred CC
T ss_conf 87