HHsearch alignment for GI: 254780337 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=99.60 E-value=6.7e-13 Score=106.44 Aligned_cols=203 Identities=21% Similarity=0.219 Sum_probs=139.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99993899868899999999889989999789899999999998649928999878999999999999999981898799
Q gi|254780337|r 20 LALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDIL 99 (257)
Q Consensus 20 ~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDil 99 (257)
T Consensus 2 riLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~----~--~~~~~~~~gDl~d~~~~~~~~~-------~~d~V 68 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNL----E--GLDVEIVEGDLRDPASLRKALA-------GCRAL 68 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHH----C--CCCCEEEEEECCCHHHHHHHHH-------CCCEE
T ss_conf 499986777999999999997849899998999865565----2--1797799820799999999971-------78589
Q ss_pred EECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC---------------C
Q ss_conf 8768758888886765999999999999899999999999999860898699978835647889---------------8
Q gi|254780337|r 100 IANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRP---------------L 164 (257)
Q Consensus 100 VNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~~~---------------~ 164 (257)
T Consensus 69 iH~Aa~~~----~~~~~---~~~~~~~Nv~gt~nll~aa~~----~~v~r~V~~SS~~v~g~~~~~~~~~E~~p~~~~~~ 137 (328)
T TIGR03466 69 FHVAADYR----LWAPD---PEEMYRANVEGTRNLLRAALE----AGVERVVYTSSVATLGVPGDGTPADETTPSSLEKM 137 (328)
T ss_pred EEECCCCC----CCCCC---HHHHHHHHHHHHHHHHHHHHH----CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 76134234----46799---899999999999999999997----29874315633578557888874025676545666
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCH----------HHHHHCCCCCC------CCCCCHHHHHHHH
Q ss_conf 3688989999999999999985443869975532883797----------79844144432------4588889999999
Q gi|254780337|r 165 WGAYSASKAAIEALARTWSKETVNTALRVINIDPGPTRTS----------MRAKAMPAEDP------NTVPHPQKVAKII 228 (257)
Q Consensus 165 ~~~Y~asKaal~~lt~~la~E~~~~gIrvn~I~PG~v~T~----------m~~~~~~~~~~------~~~~~pediA~~v 228 (257)
T Consensus 138 ~~~Y~~sK~~aE~~~~~~~~~---~gl~~~ilRp~~v~Gp~d~~~~~~~~~i~~~~~~~~p~~~~~g~~~v~V~Dva~a~ 214 (328)
T TIGR03466 138 IGHYKRSKFLAEEAALRMIAE---KGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLRGKMPAYVDTGLNLVHVDDVAEGH 214 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHH---CCCCEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEHHHHHHH
T ss_conf 577889999999999999997---29975997778568899888876699999997599976755871899838999999
Q ss_pred HHHHCHHHCCCCCEEEECCCCEEC
Q ss_conf 996197562668579876876315
Q gi|254780337|r 229 SFLCATQKIETGKLFSVPQNRFVN 252 (257)
Q Consensus 229 ~fL~s~~~~~tG~~~~vdgG~~~n 252 (257)
T Consensus 215 ~~a~--~~~~~g~~y~~~-~~~~t 235 (328)
T TIGR03466 215 LLAL--ERGRIGERYILG-GENLT 235 (328)
T ss_pred HHHH--HCCCCCCEEEEC-CCCCC
T ss_conf 9997--579989879979-99710