HHsearch alignment for GI: 254780337 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=99.65 E-value=1.7e-13 Score=110.36 Aligned_cols=209 Identities=16% Similarity=0.159 Sum_probs=148.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 48899999389986889999999988--9989999789899999999998649928999878999999999999999981
Q gi|254780337|r 16 LDNRLALVTGSSRGIGYYTALELARS--GAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRW 93 (257)
Q Consensus 16 l~~K~alVTGas~GIG~a~a~~la~~--G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 93 (257)
T Consensus 2 ~~~K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~--~~~i~f~~gDIrD~~~l~~~~~------ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--APCLRFFIGDVRDKERLTRALR------ 73 (324)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHC------
T ss_conf 99399999079779999999999972998289996686403288985168--9875999677778899997634------
Q ss_pred CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHH
Q ss_conf 89879987687588888867659999999999998999999999999998608986999788356478898368898999
Q gi|254780337|r 94 GKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKA 173 (257)
Q Consensus 94 g~iDilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~~~~~~~Y~asKa 173 (257)
T Consensus 74 -~vD~VfHaAA~-khV-p~se~nP---~e~i~tNV~Gt~nlleaa~~----~~Vkk~V~iSTDka~~P---~n~yGasK~ 140 (324)
T TIGR03589 74 -GVDYVVHAAAL-KQV-PAAEYNP---FECIRTNINGAQNVIDAAID----NGVKRVVALSTDKAANP---INLYGATKL 140 (324)
T ss_pred -CCCEEEECCCC-CCC-CHHHHCH---HHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCC---CCCCCCCHH
T ss_conf -88899994627-767-2677698---99999997999999999885----55431786226888899---674312367
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEECCCCCCCH------HHH-HHCCCCCC---------CCCCCHHHHHHHHHHHHCHHHC
Q ss_conf 9999999999985443869975532883797------798-44144432---------4588889999999996197562
Q gi|254780337|r 174 AIEALARTWSKETVNTALRVINIDPGPTRTS------MRA-KAMPAEDP---------NTVPHPQKVAKIISFLCATQKI 237 (257)
Q Consensus 174 al~~lt~~la~E~~~~gIrvn~I~PG~v~T~------m~~-~~~~~~~~---------~~~~~pediA~~v~fL~s~~~~ 237 (257)
T Consensus 141 ~~E~l~~~~~~~~~~~~~~~~~vRygNV~gsrgSViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a~--~~~ 218 (324)
T TIGR03589 141 ASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGSVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSL--ERM 218 (324)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH--HHC
T ss_conf 679999999985078886378863327518886639999999983999744499980799888999999999999--828
Q ss_pred CCCCEEEECC
Q ss_conf 6685798768
Q gi|254780337|r 238 ETGKLFSVPQ 247 (257)
Q Consensus 238 ~tG~~~~vdg 247 (257)
T Consensus 219 ~~GEifv~k~ 228 (324)
T TIGR03589 219 LGGEIFVPKI 228 (324)
T ss_pred CCCEEEECCC
T ss_conf 8984998369