HHsearch alignment for GI: 254780337 and conserved domain: cd00755
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.47 E-value=0.68 Score=26.10 Aligned_cols=161 Identities=19% Similarity=0.158 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 24889999938998688999999998899-89999789899999999998649928999878999999999999999981
Q gi|254780337|r 15 NLDNRLALVTGSSRGIGYYTALELARSGA-YVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRW 93 (257)
Q Consensus 15 ~l~~K~alVTGas~GIG~a~a~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 93 (257)
T Consensus 8 kl~~s~V~v~G~G-GvGs~~a~~LarsGVG~l~lvD~D~v~~S-------NLnRQ~~a~~~~iG~~K-~~~~~~rl~~iN 78 (231)
T cd00755 8 KLRNAHVAVVGLG-GVGSWAAEALARSGVGKLTLIDFDVVCVS-------NLNRQIHALLSTVGKPK-VEVMAERIRDIN 78 (231)
T ss_pred HHHCCCEEEECCC-HHHHHHHHHHHHCCCCEEEEEECCEECCC-------CHHHHHCCCHHHCCCCC-HHHHHHHHHHHC
T ss_conf 9854978998886-36899999999809975999719990454-------44433016563369972-899999999879
Q ss_pred CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHH-HHH
Q ss_conf 898799876875888888676599999999999--98999999999999998608986999788356478898368-898
Q gi|254780337|r 94 GKLDILIANAGILGSISPIWQIKEKSFADVISV--NVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGA-YSA 170 (257)
Q Consensus 94 g~iDilVNNAGi~~~~~~~~~~~~e~~~~~~~v--Nl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~~~~~~~-Y~a 170 (257)
T Consensus 79 P~~~v~~~~~~~~--~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~------~iplIss~Gag~k~DPt~i~v~Dl 150 (231)
T cd00755 79 PECEVDAVEEFLT--PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKR------KIPVISSMGAGGKLDPTRIRVADI 150 (231)
T ss_pred CCCEEEEEHHHCC--HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHC------CCEEEEECCCCCCCCCCEEEEEEH
T ss_conf 9988998625159--98999984547777853442487799999999982------990899867346757753898638
Q ss_pred HHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 9999999999999985443869
Q gi|254780337|r 171 SKAAIEALARTWSKETVNTALR 192 (257)
Q Consensus 171 sKaal~~lt~~la~E~~~~gIr 192 (257)
T Consensus 151 ~~T~~dpLa~~vR~~Lrk~~~~ 172 (231)
T cd00755 151 SKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred HHHCCCCHHHHHHHHHHHCCCC
T ss_conf 8505761699999999970686