HHsearch alignment for GI: 254780337 and conserved domain: pfam05368
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=99.18 E-value=1.6e-08 Score=77.16 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=120.5
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99938998688999999998899899997898999999999986499289998789999999999999999818987998
Q gi|254780337|r 21 ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILI 100 (257)
Q Consensus 21 alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDilV 100 (257)
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~~~~--~~~l~~~g--ve~v~gD~~d~~sl~~al~-------gvd~v~ 69 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSEL--AKSLKAAG--VELVEGDLDDHESLVEALK-------GVDVVF 69 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHHCC--CEEEEECCCCHHHHHHHHC-------CCCEEE
T ss_conf 099896828999999999858993899971873665--66664179--8899906888789999967-------998899
Q ss_pred ECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCC----CCCCCHHHHHHHHHHH
Q ss_conf 768758888886765999999999999899999999999999860898699978835647----8898368898999999
Q gi|254780337|r 101 ANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYK----CRPLWGAYSASKAAIE 176 (257)
Q Consensus 101 NNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~----~~~~~~~Y~asKaal~ 176 (257)
T Consensus 70 ~~~~~~~--~-------~~~~------------~~~~~~~AA~~aGVk~~V~-ss~~~~~~~~~~~~~~~~~~~~K~~~e 127 (232)
T pfam05368 70 SVTGFWL--S-------KEIE------------DGKKLADAAKEAGVKHFIP-SEFGNDVDRSNGVEPAVPHFDSKAEVE 127 (232)
T ss_pred EECCCCC--C-------HHHH------------HHHHHHHHHHHCCCCCEEE-EEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9158874--1-------7799------------9999999999739983455-550125545676665527889899999
Q ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHH------CCCC-------C--CCC--CCCHHHHHHHHHHHHCHHHCCC
Q ss_conf 999999998544386997553288379779844------1444-------3--245--8888999999999619756266
Q gi|254780337|r 177 ALARTWSKETVNTALRVINIDPGPTRTSMRAKA------MPAE-------D--PNT--VPHPQKVAKIISFLCATQKIET 239 (257)
Q Consensus 177 ~lt~~la~E~~~~gIrvn~I~PG~v~T~m~~~~------~~~~-------~--~~~--~~~pediA~~v~fL~s~~~~~t 239 (257)
T Consensus 128 ~~l~-------~~g~~~tilrp~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dva~~~~~~l~~p~~~~ 200 (232)
T pfam05368 128 RYIR-------ALGIPYTFVYAGFFMGNFLSNLAPPGDLAPPRDKVTLLGPGNPKAVPLDDEEDIGTYVIKILDDPRKLK 200 (232)
T ss_pred HHHH-------HHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHCCHHHCC
T ss_conf 9999-------819985999684254301656544320257653699944898761126528899999999964912119
Q ss_pred CCEEEECCCCEECC
Q ss_conf 85798768763154
Q gi|254780337|r 240 GKLFSVPQNRFVNY 253 (257)
Q Consensus 240 G~~~~vdgG~~~n~ 253 (257)
T Consensus 201 ~~~~~~~-~~~lT~ 213 (232)
T pfam05368 201 GKYIRPP-GNILSG 213 (232)
T ss_pred CEEEEEC-CCCCCH
T ss_conf 9999828-986799