RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780337|ref|YP_003064750.1| oxidoreductase protein
[Candidatus Liberibacter asiaticus str. psy62]
(257 letters)
>gnl|CDD|31231 COG1028, FabG, Dehydrogenases with different specificities (related
to short-chain alcohol dehydrogenases) [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 251
Score = 136 bits (343), Expect = 6e-33
Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 20/248 (8%)
Query: 15 NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQ--LEKLKNALQKI-NKKIDI 71
+L ++ALVTG+S GIG A LAR GA V+ R + E L A+++ +
Sbjct: 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAA 61
Query: 72 FAFDLRDS-NALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMA 130
A D+ D ++E + +G++DIL+ NAGI G +P+ ++ E+ + VI VN++
Sbjct: 62 VAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLG 121
Query: 131 NWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTA 190
+ + R+ P +KK R + +SS A P AY+ASKAA+ L + + E
Sbjct: 122 AFLLTRAALPLMKK---QRIVNISSVAGLGGPPGQAAYAASKAALIGLTKALALELAPRG 178
Query: 191 LRVINIDPGPTRTSMRAKAMPAEDPNT-----------VPHPQKVAKIISFLCATQKIE- 238
+RV + PG T M A AE + P++VA ++FL + +
Sbjct: 179 IRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAASY 238
Query: 239 -TGKLFSV 245
TG+ V
Sbjct: 239 ITGQTLPV 246
>gnl|CDD|33946 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown
specificity [General function prediction only].
Length = 246
Score = 128 bits (324), Expect = 1e-30
Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 15 NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAF 74
L ++AL+TG+S GIG TA LA +GA V+ R +LE L + + A
Sbjct: 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA--GAALALAL 60
Query: 75 DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI 134
D+ D A+E + + +G++DIL+ NAG L P+ + + +I NV N
Sbjct: 61 DVTDRAAVEAAIEALPEEFGRIDILVNNAG-LALGDPLDEADLDDWDRMIDTNVKGLLNG 119
Query: 135 MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
R+ P + + G I L S A P Y A+KAA+ A + +E T +RV
Sbjct: 120 TRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVT 179
Query: 195 NIDPGPTRTSMRA---------KAMPAEDPNTVPHPQKVAKIISF 230
I PG T+ + +A T P+ +A+ + F
Sbjct: 180 VISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLF 224
>gnl|CDD|35944 KOG0725, KOG0725, KOG0725, Reductases with broad range of substrate
specificities [General function prediction only].
Length = 270
Score = 126 bits (317), Expect = 6e-30
Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 21/238 (8%)
Query: 16 LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKIN---KKIDIF 72
L ++ALVTG S GIG AL LA++GA V+ GRS +LE+ L + K+
Sbjct: 6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAI 65
Query: 73 AFDLRD-SNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMAN 131
D+ + +L + + K +GK+DIL+ NAG LG I + E+ F +++ N+ +
Sbjct: 66 VCDVSKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGS 125
Query: 132 WNIMRSF-DPWLKKSHCGRAIILSSGAAYK-CRPLWGAYSASKAAIEALARTWSKETVNT 189
++ P LKKS G + +SS A AY SKAA+ L R+ +KE
Sbjct: 126 AFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVAYGVSKAALLQLTRSLAKELAKH 185
Query: 190 ALRVINIDPGPTRTSMRAKAMPAED----------PNTVP-----HPQKVAKIISFLC 232
+RV ++ PG +TS+RA + + VP P++VA+ +FL
Sbjct: 186 GIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFLA 243
>gnl|CDD|36419 KOG1205, KOG1205, KOG1205, Predicted dehydrogenase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 282
Score = 122 bits (308), Expect = 8e-29
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 4/210 (1%)
Query: 15 NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKI--NKKIDIF 72
L ++ L+TG+S GIG A ELA+ GA ++ R +LE++ L+K+ +K+ +
Sbjct: 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVL 68
Query: 73 AFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANW 132
D+ D +++ + + +G++D+L+ NAGI + + +V+ NV
Sbjct: 69 QLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISLV-GFLEDTDIEDVRNVMDTNVFGTV 127
Query: 133 NIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALR 192
+ ++ P +KK + G +++SS A P YSASK A+E T +E +
Sbjct: 128 YLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQELIPLGTI 187
Query: 193 V-INIDPGPTRTSMRAKAMPAEDPNTVPHP 221
+ I + PGP T K + E+ + P
Sbjct: 188 IIILVSPGPIETEFTGKELLGEEGKSQQGP 217
>gnl|CDD|30648 COG0300, DltE, Short-chain dehydrogenases of various substrate
specificities [General function prediction only].
Length = 265
Score = 120 bits (302), Expect = 5e-28
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 11/236 (4%)
Query: 16 LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNAL-QKINKKIDIFAF 74
+ + AL+TG+S GIG A +LAR G +I R +LE L L K ++++
Sbjct: 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63
Query: 75 DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI 134
DL D ALE + + +R G +D+L+ NAG G+ P ++ ++I +N++A +
Sbjct: 64 DLSDPEALERLEDELKERGGPIDVLVNNAGF-GTFGPFLELSLDEEEEMIQLNILALTRL 122
Query: 135 MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
++ P + + G I + S A P YSA+KA + + + +E T ++V
Sbjct: 123 TKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVKVT 182
Query: 195 NIDPGPTRTSM----RAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETGKLFSVP 246
+ PGPTRT + V P+ VA+ +E GK +P
Sbjct: 183 AVCPGPTRTEFFDAKGSDVYLLSPGELVLSPEDVAEAALKA-----LEKGKREIIP 233
>gnl|CDD|143883 pfam00106, adh_short, short chain dehydrogenase. This family
contains a wide variety of dehydrogenases.
Length = 167
Score = 99.2 bits (248), Expect = 1e-21
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 21 ALVTGSSRGIGYYTALELARSGAYVIA-CGRSIS--QLEKLKNALQKINKKIDIFAFDLR 77
L+TG + G+G A LA GA + R +L L+ + ++ + A D+
Sbjct: 3 VLITGGTGGLGLALARWLAAEGARHLVLVSRRGDAPGAAELVAELEALGAEVTVAACDVA 62
Query: 78 DSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRS 137
D +AL + G LD ++ NAG+L P+ ++ + F V++ V WN+
Sbjct: 63 DRDALAALLAALPAALGPLDGVVHNAGVLDD-GPLEELTPERFERVLAPKVTGAWNLHEL 121
Query: 138 FDPWLKKSHCGRAIIL-SSGAAYKCRPLWGAYSASKAAIEALARTWSKE 185
A +L SS A P Y+A+ AA++ALA E
Sbjct: 122 TLD-----LDLGAFVLFSSVAGVLGSPGQANYAAANAALDALAEHRRAE 165
>gnl|CDD|36422 KOG1208, KOG1208, KOG1208, Dehydrogenases with different
specificities (related to short-chain alcohol
dehydrogenases) [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 314
Score = 98.1 bits (244), Expect = 2e-21
Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 28/256 (10%)
Query: 13 HVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIF 72
++L ++ALVTG++ GIG+ TA ELA GA+V+ R+ + E+ K +QK I
Sbjct: 30 GIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIR 89
Query: 73 AF--DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMA 130
DL ++ K+ G LD+LI NAG++ P + + + + N +
Sbjct: 90 VIQLDLSSLKSVRKFAEEFKKKEGPLDVLINNAGVMA---PPFSLTKDGLELTFATNYLG 146
Query: 131 NWNIMRSFDPWLKKSHCGRAIILSSGAA------YKCRPLWG-------AYSASKAAIEA 177
++ + P LK+S R + +SS AY+ SK A
Sbjct: 147 HFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKLYSSDAAYALSKLANVL 206
Query: 178 LARTWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQ-- 235
LA +K + + ++ PG +T+ ++ + K AT
Sbjct: 207 LANELAKR-LKKGVTTYSVHPGVVKTTGLSRVNLLLRLLAKKLSWPLTKSPEQGAATTCY 265
Query: 236 -------KIETGKLFS 244
+ +GK F
Sbjct: 266 AALSPELEGVSGKYFE 281
>gnl|CDD|36423 KOG1209, KOG1209, KOG1209, 1-Acyl dihydroxyacetone phosphate
reductase and related dehydrogenases [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 289
Score = 96.3 bits (239), Expect = 7e-21
Identities = 59/200 (29%), Positives = 83/200 (41%), Gaps = 6/200 (3%)
Query: 20 LALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDS 79
+ + SS GIGY A E AR+G V A R + + +L K+D+ +
Sbjct: 10 VLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDV----SKPE 65
Query: 80 NALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFD 139
+ ++ A GKLD+L NAG P + VNV + + R+
Sbjct: 66 EVVTVSGEVRANPDGKLDLLYNNAGQ-SCTFPALDATIAAVEQCFKVNVFGHIRMCRALS 124
Query: 140 PWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVINIDPG 199
+L K+ G + + S A P YSASKAAI A ART E +RVIN G
Sbjct: 125 HFLIKAK-GTIVNVGSLAGVVPFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITG 183
Query: 200 PTRTSMRAKAMPAEDPNTVP 219
T + K +P P
Sbjct: 184 GVATDIADKRLPETTIYNFP 203
>gnl|CDD|36232 KOG1014, KOG1014, KOG1014, 17 beta-hydroxysteroid dehydrogenase
type 3, HSD17B3 [Lipid transport and metabolism].
Length = 312
Score = 84.9 bits (210), Expect = 2e-17
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 8/238 (3%)
Query: 21 ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINK-KIDIFAFDL-RD 78
A+VTG++ GIG A ELA+ G V+ R+ +LE + +++ K ++ I A D +
Sbjct: 52 AVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKG 111
Query: 79 SNALELTKTYIAKRWGKLDILIANAGIL-GSISPIWQIKEKSFADVISVNVMANWNIMRS 137
E +A + IL+ N G+ + E ++I+VN+++ + +
Sbjct: 112 DEVYEKLLEKLAG--LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQL 169
Query: 138 FDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVINID 197
P + + G + + S A PL YSASKA ++ +R KE + + V ++
Sbjct: 170 ILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVI 229
Query: 198 PGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETGKLFSVPQNRFVNYLT 255
P T M P VP P+ AK TG L Q + L
Sbjct: 230 PYLVATKMAKYRKP---SLFVPSPETFAKSALNTIGNASETTGYLNHAIQVLLITLLP 284
>gnl|CDD|36415 KOG1201, KOG1201, KOG1201, Hydroxysteroid 17-beta dehydrogenase 11
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 300
Score = 84.1 bits (208), Expect = 3e-17
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 14/231 (6%)
Query: 18 NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAF--D 75
+ L+TG G+G ALE A+ GA ++ + E+ ++KI + A+ D
Sbjct: 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGE---AKAYTCD 94
Query: 76 LRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIM 135
+ D + + K G +DIL+ NAGI+ + + ++ VN +A++
Sbjct: 95 ISDREEIYRLAKKVKKEVGDVDILVNNAGIV-TGKKLLDCSDEEIQKTFDVNTIAHFWTT 153
Query: 136 RSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVIN 195
++F P + +++ G + ++S A Y ASK A + S E I
Sbjct: 154 KAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAVGFHESLSMELRALGKDGIK 213
Query: 196 ---IDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETGKLF 243
+ P T M A P + P+ VAK I + I T +
Sbjct: 214 TTLVCPYFINTGMFDGATPFPTLAPLLEPEYVAKRI-----VEAILTNQAG 259
>gnl|CDD|36424 KOG1210, KOG1210, KOG1210, Predicted 3-ketosphinganine reductase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 331
Score = 79.6 bits (196), Expect = 8e-16
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 16/224 (7%)
Query: 18 NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQ--KINKKIDIFAFD 75
R L+TG S G+G ALE R GA V RS +L + K L+ + + + D
Sbjct: 33 RRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVD 92
Query: 76 LRDSNALELTKTYIAKRWGKLDILIANAG--ILGSISPIWQIKEKSFADVISVNVMANWN 133
+ D +++ + G +D L AG + G + + ++ VN + N
Sbjct: 93 VIDYDSVSKVIEELRDLEGPIDNLFCCAGVAVPGLFE---DLSPEVVEKLMDVNYLGTVN 149
Query: 134 IMRSFDPWLKK-SHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALR 192
+ ++ +KK H GR I++SS A + AYS SK A+ LA +E + +
Sbjct: 150 VAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALRGLAEALRQELIKYGVH 209
Query: 193 VINIDPGPTRT---SMRAKAMPA-----EDPNTVPHPQKVAKII 228
V P T T K P E ++V +++AK I
Sbjct: 210 VTLYYPPDTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAI 253
>gnl|CDD|36418 KOG1204, KOG1204, KOG1204, Predicted dehydrogenase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 253
Score = 79.2 bits (195), Expect = 9e-16
Identities = 49/191 (25%), Positives = 71/191 (37%), Gaps = 13/191 (6%)
Query: 22 LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNA 81
L+TG+SRGIG + + + G + E L+ D+ +
Sbjct: 10 LLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYGDDFVHVVGDITEEQL 68
Query: 82 LELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI--MRSFD 139
L + K+ GK DI+I NAG LG +S D + N+ M S
Sbjct: 69 LGALREAPRKKGGKRDIIIHNAGSLGDVSKG----AVDLGDSDQWKKYWDLNLFSMVSLV 124
Query: 140 PWLKKSHCGR-----AIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
W + +SS AA + W AY +SKAA + E +RV+
Sbjct: 125 QWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCSSKAARNMYFMVLASEEPFD-VRVL 183
Query: 195 NIDPGPTRTSM 205
N PG T M
Sbjct: 184 NYAPGVVDTQM 194
>gnl|CDD|36823 KOG1610, KOG1610, KOG1610, Corticosteroid 11-beta-dehydrogenase and
related short chain-type dehydrogenases [Secondary
metabolites biosynthesis, transport and catabolism,
General function prediction only].
Length = 322
Score = 78.4 bits (193), Expect = 2e-15
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 7/195 (3%)
Query: 14 VNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFA 73
+L ++ L+TG G G A +L + G V A + E L+ + + ++
Sbjct: 25 DSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLR--GETKSPRLRTLQ 82
Query: 74 FDLRDSNALELTKTYIAKRWGK--LDILIANAGILGSISPI-WQIKEKSFADVISVNVMA 130
D+ +++ ++ K G+ L L+ NAGI G + P W E + V++VN++
Sbjct: 83 LDVTKPESVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVE-DYRKVLNVNLLG 141
Query: 131 NWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTA 190
+ ++F P L+++ GR + +SS P G Y SK A+EA + + +E
Sbjct: 142 TIRVTKAFLPLLRRAR-GRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPFG 200
Query: 191 LRVINIDPGPTRTSM 205
++V I+PG +T++
Sbjct: 201 VKVSIIEPGFFKTNL 215
>gnl|CDD|36414 KOG1200, KOG1200, KOG1200, Mitochondrial/plastidial
beta-ketoacyl-ACP reductase [Lipid transport and
metabolism].
Length = 256
Score = 74.6 bits (183), Expect = 2e-14
Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 12/232 (5%)
Query: 10 SEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKI 69
E+ L +++A VTG S GIG A LA+ GA V + E L
Sbjct: 6 GEVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHS 65
Query: 70 DIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVM 129
F+ D+ ++ ++ T + K G +L+ AGI + ++K++ + VI+VN+
Sbjct: 66 A-FSCDVSKAHDVQNTLEEMEKSLGTPSVLVNCAGITRD-GLLLRMKQEQWDSVIAVNLT 123
Query: 130 ANWNIMRSF--DPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETV 187
+ + ++ + + I +SS Y+ASK + +T ++E
Sbjct: 124 GVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASKGGVIGFTKTAARELA 183
Query: 188 NTALRVINIDPGPTRTSMRAKAMP---AEDPNTVP-----HPQKVAKIISFL 231
+RV + PG T M P + +P ++VA ++ FL
Sbjct: 184 RKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANLVLFL 235
>gnl|CDD|33748 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine
esterification of lipoteichoic acid and wall teichoic
acid (D-alanine transfer protein) [Cell envelope
biogenesis, outer membrane].
Length = 245
Score = 74.2 bits (182), Expect = 4e-14
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 11/207 (5%)
Query: 14 VNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFA 73
+ L+TG + GIG A G VI CGR+ +L + K +I+
Sbjct: 1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHT----EV 56
Query: 74 FDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKE--KSFADVISVNVMAN 131
D+ D ++ ++ K + L++LI NAGI + + ++ I+ N++A
Sbjct: 57 CDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNED-LTGAEDLLDDAEQEIATNLLAP 115
Query: 132 WNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTAL 191
+ P L + I +SSG A+ Y A+KAAI + ++ +T++
Sbjct: 116 IRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALREQLKDTSV 175
Query: 192 RVINIDP----GPTRTSMRAKAMPAED 214
VI + P + MP
Sbjct: 176 EVIELAPPLVDTTEGNTQARGKMPLSA 202
>gnl|CDD|36421 KOG1207, KOG1207, KOG1207, Diacetyl reductase/L-xylulose reductase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 245
Score = 73.2 bits (179), Expect = 7e-14
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 16 LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFD 75
L + LVTG+ GIG L LA++GA VIA R+ + L L +++ I D
Sbjct: 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSL---VKETPSLIIPIVGD 61
Query: 76 LRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI- 134
L AL + +D L+ NAG+ + P +I ++SF +VNV A +
Sbjct: 62 LSAWEALF---KLLVPV-FPIDGLVNNAGV-ATNHPFGEITQQSFDRTFAVNVRAVILVA 116
Query: 135 ---MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWG--AYSASKAAIEALARTWSKETVNT 189
R+ K G + +SS A+ RPL Y A+KAA++ L + + E
Sbjct: 117 QLVARNLVDRQIK---GAIVNVSSQASI--RPLDNHTVYCATKAALDMLTKCLALELGPQ 171
Query: 190 ALRVINIDPGPTRTSM 205
+RV +++P T M
Sbjct: 172 KIRVNSVNPTVVMTDM 187
>gnl|CDD|39371 KOG4169, KOG4169, KOG4169, 15-hydroxyprostaglandin dehydrogenase
and related dehydrogenases [Lipid transport and
metabolism, General function prediction only].
Length = 261
Score = 71.1 bits (174), Expect = 3e-13
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 17/197 (8%)
Query: 16 LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFD 75
L + ALVTG + GIG T+ L G V+ S E + LQ IN + +
Sbjct: 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIA-KLQAINPSVSVIFIK 61
Query: 76 LRDSNALELTKTY--IAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWN 133
+N +L + I +G +DILI AGIL +K + I+VN+ N
Sbjct: 62 CDVTNRGDLEAAFDKILATFGTIDILINGAGIL---------DDKDWERTINVNLTGVIN 112
Query: 134 IMRSFDPWLKKSHCGRAII---LSSGAAYKCRPLWGAYSASKAAIEALARTWSKETV--N 188
+ P++ K G+ I +SS A P++ Y+ASKA + R+ +
Sbjct: 113 GTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTRSLADLAYYQR 172
Query: 189 TALRVINIDPGPTRTSM 205
+ +R + PG TRT +
Sbjct: 173 SGVRFNAVCPGFTRTDL 189
>gnl|CDD|36824 KOG1611, KOG1611, KOG1611, Predicted short chain-type dehydrogenase
[General function prediction only].
Length = 249
Score = 67.2 bits (164), Expect = 4e-12
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 22 LVTGSSRGIGYYTALEL-ARSGAYVIACG-RSISQLEKLKNALQKINKKIDIFAFDLRDS 79
+TG++RGIG EL G VI R + K + ++ I D+
Sbjct: 7 FITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCD 66
Query: 80 NALELTKTYIAKRWG--KLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRS 137
+++ + K G L++LI NAGI S + + + + N + + ++
Sbjct: 67 ESIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQA 126
Query: 138 FDPWLKKSH---------CGRAIIL----SSGAAYKCRPL-WGAYSASKAAIEALARTWS 183
F P LKK+ RA I+ S+G+ RP AY SKAA+ A++ S
Sbjct: 127 FLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGGFRPGGLSAYRMSKAALNMFAKSLS 186
Query: 184 KETVNTALRVINIDPGPTRTSM 205
+ + + V++I PG +T M
Sbjct: 187 VDLKDDHILVVSIHPGWVQTDM 208
>gnl|CDD|36413 KOG1199, KOG1199, KOG1199, Short-chain alcohol
dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 260
Score = 58.5 bits (141), Expect = 2e-09
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 29/240 (12%)
Query: 18 NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKI-DIFAFDL 76
+ALVTG + G+G TA LA+ GA V + L + K A + K++ F
Sbjct: 9 GLVALVTGGASGLGKATAERLAKQGASVA-----LLDLPQSKGA--DVAKELGGKVVFTP 61
Query: 77 RDSNALELTKTYIAK---RWGKLDILIANAGILGSISPIWQIKEK------SFADVISVN 127
D + + + +AK ++G+LD L+ AGI + +++K F VI VN
Sbjct: 62 ADVTSEKDVRAALAKAKAKFGRLDALVNCAGI-AYAFKTYNVQKKKHHDLEDFQRVIDVN 120
Query: 128 VMANWNIMRSFDPWL----KKSHCGRAIIL--SSGAAYKCRPLWGAYSASKAAIEALART 181
V+ +N++R + + R +I+ +S AA+ + AYSASK AI +
Sbjct: 121 VLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTGQAAYSASKGAIVGMTLP 180
Query: 182 WSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPN----TVPHPQKVAKIISFLCATQKI 237
+++ +R I PG T + + ++P + + +P P ++ + Q I
Sbjct: 181 IARDLAGDGIRFNTIAPGLFDTPLLS-SLPEKVKSFLAQLIPFPSRLGHPHEYAHLVQAI 239
>gnl|CDD|30968 COG0623, FabI, Enoyl-[acyl-carrier-protein].
Length = 259
Score = 52.9 bits (127), Expect = 8e-08
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 15 NLDNRLALVTG--SSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKID-- 70
L+ + L+ G ++R I + A LA GA + Q E+L+ ++++ +++
Sbjct: 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTY----QGERLEKRVEELAEELGSD 58
Query: 71 -IFAFDLRDSNALELTKTYIAKRWGKLDIL---IANAGILGSISPIWQIKEKSFADVISV 126
+ D+ + +++ I K+WGKLD L IA A + F + +
Sbjct: 59 LVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDI 118
Query: 127 NVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKET 186
+ + + ++ P + G + L+ + + P + +KAA+EA R + +
Sbjct: 119 SAYSFTALAKAARPLMNNG--GSILTLTYLGSERVVPNYNVMGVAKAALEASVRYLAADL 176
Query: 187 VNTALRVINIDPGPTRT 203
+RV I GP RT
Sbjct: 177 GKEGIRVNAISAGPIRT 193
>gnl|CDD|30800 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 314
Score = 51.9 bits (123), Expect = 2e-07
Identities = 42/204 (20%), Positives = 67/204 (32%), Gaps = 37/204 (18%)
Query: 22 LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNA 81
LVTG + IG + L +G V R L+ L ++ DL D +
Sbjct: 4 LVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL-------LSGVEFVVLDLTDRDL 56
Query: 82 LELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPW 141
++ G D +I A S + A+ + VNV N++
Sbjct: 57 VD------ELAKGVPDAVIHLAA----QSSVPDSNASDPAEFLDVNVDGTLNLLE----A 102
Query: 142 LKKSHCGRAIILSSGAAY--KCRPLW-----------GAYSASKAAIEALARTWSKETVN 188
+ + R + SS + PL Y SK A E L R +++
Sbjct: 103 ARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGL 162
Query: 189 --TALRVINIDPGPTRTSMRAKAM 210
LR N+ GP + +
Sbjct: 163 PVVILRPFNV-YGPGDKPDLSSGV 185
>gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
This family of proteins utilize NAD as a cofactor. The
proteins in this family use nucleotide-sugar substrates
for a variety of chemical reactions.
Length = 235
Score = 47.7 bits (114), Expect = 3e-06
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 30/176 (17%)
Query: 21 ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSN 80
LVTG + IG L + G VI GR +L + DL D +
Sbjct: 1 ILVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRS-----ESLNTGRIRFRFHEGDLTDPD 55
Query: 81 ALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDP 140
ALE +A+ + D +I L + S + E A+ I NV+ N++
Sbjct: 56 ALE---RLLAE--VQPDAVI----HLAAQSGVGASFEDP-AEFIRANVLGTLNLLE---- 101
Query: 141 WLKKSHCGRAIILSSGAAY-KCRPL----------WGAYSASKAAIEALARTWSKE 185
+++ R + SS Y Y+A+K A E L +++
Sbjct: 102 AARRAGVKRFVFASSSEVYGDVADPPITEDTPLGPLSPYAAAKLAGERLVLAYARA 157
>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 305
Score = 41.2 bits (97), Expect = 3e-04
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 19 RLALVTGSSRGIGYYTALELA-RSGAYVIACGRSISQLEKLKNA 61
R LVTG+S G+G + A++LA +GA+V+A S ++ E L+
Sbjct: 134 RRVLVTGASGGVGRF-AVQLAALAGAHVVAVVGSPARAEGLREL 176
>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
tetrahydromethanopterin dehydrogenase. Methylene
Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
binding domain. NADP-dependent H4MPT DH catalyzes the
dehydrogenation of methylene- H4MPT and
methylene-tetrahydrofolate (H4F) with NADP+ as cofactor.
H4F and H4MPT are both cofactors that carry the
one-carbon units between the formyl and methyl oxidation
level. H4F and H4MPT are structurally analogous to each
other with respect to the pterin moiety, but each has
distinct side chain. H4MPT is present only in anaerobic
methanogenic archaea and aerobic methylotrophic
proteobacteria. H4MPT seems to have evolved
independently from H4F and functions as a distinct
carrier in C1 metabolism. Amino acid DH-like
NAD(P)-binding domains are members of the Rossmann fold
superfamily and include glutamate, leucine, and
phenylalanine DHs, methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 194
Score = 37.8 bits (88), Expect = 0.003
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 21 ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINK--KIDIFAFDLRD 78
A+V G + +G A+ LAR GA V+ GR LE+ + A + + A + D
Sbjct: 31 AVVLGGTGPVGQRAAVLLAREGARVVLVGR---DLERAQKAADSLRARFGEGVGAVETSD 87
Query: 79 -SNALELTKTYIAKRWGKLDILIAN--AGILGSISPIWQIKEKSFADVISVNV 128
+ K D++ A AG+ W K A VN
Sbjct: 88 DAARAAAIKG--------ADVVFAAGAAGVELLEKLAWA--PKPLAVAADVNA 130
>gnl|CDD|36715 KOG1502, KOG1502, KOG1502, Flavonol reductase/cinnamoyl-CoA
reductase [Defense mechanisms].
Length = 327
Score = 36.8 bits (85), Expect = 0.006
Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 51/210 (24%)
Query: 18 NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN--ALQKINKKIDIFAFD 75
+ VTG+S IG + L G V R +K ++ L+ +++ +F D
Sbjct: 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKAD 65
Query: 76 LRDSNALELTKTYIAKRWGKLDILIAN-AGILGSISPIWQIKEKSFADVISVNVMANWNI 134
L D + D I G+ + SP+ E ++I V N+
Sbjct: 66 LLDEGS--------------FDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNV 111
Query: 135 MRSFDPWLKKSHCGRAIILSSGAA-------------------------YKCRPLWGAYS 169
+ + KK+ + ++ +S A +C+ LW Y+
Sbjct: 112 LEA----CKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLW--YA 165
Query: 170 ASKAAIEALARTWSKETVNTALRVINIDPG 199
SK E A ++KE L ++ I+PG
Sbjct: 166 LSKTLAEKAAWEFAKENG---LDLVTINPG 192
>gnl|CDD|36691 KOG1478, KOG1478, KOG1478, 3-keto sterol reductase [Lipid transport
and metabolism].
Length = 341
Score = 35.4 bits (81), Expect = 0.015
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 19 RLALVTGSSRGIGYYTALELARSG------AYVIACGRSISQLEKLKNALQ----KINKK 68
++AL+TG++ G+G L + C R++S+ E + AL+ K +
Sbjct: 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTC-RNMSKAEAVCAALKAFHPKSTIE 62
Query: 69 IDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGI 105
+ D+ + ++ I +R+ +LD + NAGI
Sbjct: 63 VTYVLVDVSNMQSVFRASKDIKQRFQRLDYIYLNAGI 99
>gnl|CDD|36585 KOG1371, KOG1371, KOG1371, UDP-glucose
4-epimerase/UDP-sulfoquinovose synthase [Cell
wall/membrane/envelope biogenesis].
Length = 343
Score = 34.1 bits (78), Expect = 0.035
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 LVTGSSRGIGYYTALELARSGAYVIA----CGRSISQLEKLKNALQKINKKIDIFAFDLR 77
LVTG + IG +T L L + G V+ + L++++ L + K + DL
Sbjct: 6 LVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGE-GKSVFFVEGDLN 64
Query: 78 DSNALE 83
D+ ALE
Sbjct: 65 DAEALE 70
>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. This group contains proteins that
share the characteristic catalytic and structural
zinc-binding sites of the zinc-dependent alcohol
dehydrogenase family. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine
(His-51), the ribose of NAD, a serine (Ser-48), then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 332
Score = 32.7 bits (75), Expect = 0.11
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 22 LVTGSSRGIGYYTALELARS-GAYVIACGRSISQLEKLK 59
LVTG+ G+G + A++LA++ GA VIA RS +L+ LK
Sbjct: 167 LVTGAGGGVGIH-AIQLAKALGARVIAVTRSPEKLKILK 204
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 31.9 bits (73), Expect = 0.17
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 22 LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLK 59
LV G+ G+G A +GA VI RS +LE K
Sbjct: 139 LVLGAG-GVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175
>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR). QOR catalyzes the
conversion of a quinone + NAD(P)H to a hydroquinone +
NAD(P)+. Quinones are cyclic diones derived from
aromatic compounds. Membrane bound QOR acts in the
respiratory chains of bacteria and mitochondria, while
soluble QOR acts to protect from toxic quinones (e.g.
DT-diaphorase) or as a soluble eye-lens protein in some
vertebrates (e.g. zeta-crystalin). QOR reduces quinones
through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 323
Score = 30.5 bits (70), Expect = 0.44
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 22 LVTGSSRGIGYYTALELARS-GAYVIACGRS 51
LV G++ G+G A++LA++ GA VIA S
Sbjct: 144 LVLGAAGGVGL-AAVQLAKALGARVIAAASS 173
>gnl|CDD|31046 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar
epimerases [Cell envelope biogenesis, outer membrane /
Carbohydrate transport and metabolism].
Length = 275
Score = 29.5 bits (65), Expect = 0.89
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 22 LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNA 81
LVTG++ +G EL G V A R+ A + +++ DLRD +
Sbjct: 4 LVTGATGFVGGAVVRELLARGHEVRAAVRN-------PEAAAALAGGVEVVLGDLRDPKS 56
Query: 82 LEL 84
L
Sbjct: 57 LVA 59
>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and
related eicosanoids are metabolized by the oxidation of
the 15(S)-hydroxyl group of the NAD+-dependent (type I
15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH)
followed by reduction by NADPH/NADH-dependent (type II
15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to
15-keto-13,14,-dihydroprostaglandins. 13-PGR is a
bifunctional enzyme, since it also has leukotriene B(4)
12-hydroxydehydrogenase activity. These 15-PGDH and
related enzymes are members of the medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 329
Score = 29.0 bits (66), Expect = 1.2
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 34 TALELARSGAYVIACGRSISQ-----LEKLKNALQKINKKIDIFAFDLRD 78
AL L G + CG +ISQ KN I K++ + F + D
Sbjct: 229 AALTLLNKGGRIALCG-AISQYNATEPPGPKNLGNIITKRLTMQGFIVSD 277
>gnl|CDD|132758 cd07073, NR_LBD_AR, Ligand binding domain of the nuclear receptor
androgen receptor, ligand activated transcription
regulator. The ligand binding domain of the androgen
receptor (AR): AR is a member of the nuclear receptor
family. It is activated by binding either of the
androgenic hormones, testosterone or
dihydrotestosterone, which are responsible for male
primary sexual characteristics and for secondary male
characteristics, respectively. The primary mechanism of
action of ARs is by direct regulation of gene
transcription. The binding of an androgen results in a
conformational change in the androgen receptor which
causes its transport from the cytosol into the cell
nucleus, and dimerization. The receptor dimer binds to a
hormone response element of AR-regulated genes and
modulates their expression. Another mode of action is
independent of their interactions with DNA. The
receptors interact directly with signal transduction
proteins in the cytoplasm, causing rapid changes in cell
function, such as ion transport. Like other members of
the nuclear receptor (NR) superfamily of
ligand-activated transcription factors, AR has a
central well conserved DNA binding domain (DBD), a
variable N-terminal domain, a flexible hinge and a
C-terminal ligand binding domain (LBD). The LBD is not
only involved in binding to androgen, but also involved
in binding of coactivator proteins and dimerization. A
ligand dependent nuclear export signal is also present
at the ligand binding domain.
Length = 246
Score = 29.1 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 47 ACGRSISQLEKLKNALQKINKKIDIFAFDL 76
+C R QL KL +++Q I +++ F FDL
Sbjct: 180 SCSRRFYQLTKLLDSVQPIARELHQFTFDL 209
>gnl|CDD|144480 pfam00899, ThiF, ThiF family. This family contains a repeated
domain in ubiquitin activating enzyme E1 and members of
the bacterial ThiF/MoeB/HesA family.
Length = 134
Score = 28.7 bits (65), Expect = 1.6
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 50/129 (38%)
Query: 29 GIGYYTALELARSGAYVIACGR---------SISQL----------------EKLKNALQ 63
G+G A LAR+G G+ +S L E K L+
Sbjct: 11 GLGSPAAEYLARAG-----VGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLR 65
Query: 64 KINKKIDIFAFDLR--DSNALELTKTY------------------IAKRWGKLDILIANA 103
IN +++ A+ R N EL K + G I
Sbjct: 66 AINPDVEVEAYPERLTPENLEELLKGADLVVDALDNFAARYLLNDACVKRGIPLISAGAL 125
Query: 104 GILGSISPI 112
G G ++ I
Sbjct: 126 GFDGQVTVI 134
>gnl|CDD|36441 KOG1227, KOG1227, KOG1227, Putative methyltransferase [General
function prediction only].
Length = 351
Score = 28.0 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 29 GIGYYTALELARSGA-YVIACGRSISQLEKLKNALQKIN 66
GIGY+T L +GA V AC + +E L+ + N
Sbjct: 204 GIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN 242
>gnl|CDD|32610 COG2717, COG2717, Predicted membrane protein [Function unknown].
Length = 209
Score = 27.9 bits (62), Expect = 3.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 91 KRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKS 145
KRW KL L+ A ILG++ +W +K V+ + A ++R K
Sbjct: 144 KRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTRSKLR 198
>gnl|CDD|34587 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 27.7 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 166 GAYSASKAAIEALARTWSKET 186
GAY SK A++A+ W E+
Sbjct: 564 GAYGESKLALDAVVNRWHSES 584
>gnl|CDD|30949 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only].
Length = 326
Score = 27.7 bits (61), Expect = 3.8
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 22 LVTGSSRGIGYYTALELARS-GAYVIACGRSISQLEKLKN--ALQKINKKIDIFAFDLRD 78
LV G++ G+G A++LA++ GA V+A S +LE LK A IN + + F +R+
Sbjct: 147 LVHGAAGGVGSA-AIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRE 205
>gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 27.2 bits (60), Expect = 4.4
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 8 NNSEIHVNLDNRLALVTGSSRGIGYYTALELARSG-AYVIACGRSISQLEKLKNALQKIN 66
+ I L + LVTG IG ++ + +I R +L + L++
Sbjct: 240 DTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF 299
Query: 67 KKIDIFAF--DLRDSNALE 83
++ + + D+RD + +E
Sbjct: 300 PELKLRFYIGDVRDRDRVE 318
>gnl|CDD|32590 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 27.2 bits (60), Expect = 4.6
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 29 GIGYYTALELARSGA-YVIACGRSISQLEKLK-NA-LQKINKKIDIFAFDLRD 78
G+G ++ + +A+ G V A + +E LK N L K+ +++ D R+
Sbjct: 198 GVGPFS-IPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE 249
>gnl|CDD|34074 COG4359, COG4359, Uncharacterized conserved protein [Function
unknown].
Length = 220
Score = 26.8 bits (59), Expect = 5.5
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 67 KKIDIFA-FD----LRDSNALELTKTYIAKRWGKL--DILIANAGILGSISPIWQIKEKS 119
KK IF+ FD L DSN +T T+ W L +L ++ S
Sbjct: 2 KKPVIFSDFDGTITLNDSNDY-ITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSS 60
Query: 120 FADVISVNVMANWNIMRSFDPWLK--KSHCGRAIILSSGAAYKCRPL 164
+++ ++ + I F +++ K H I++SSG PL
Sbjct: 61 LEEILEF-LLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPL 106
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain
of methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate
dehydrogenase/cyclohydrolase. NAD(P) binding domains
of methylene-tetrahydrofolate dehydrogenase (m-THF DH)
and m-THF DH/cyclohydrolase bifunctional enzymes
(m-THF DH/cyclohydrolase). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs
also have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a
multifunctional protein in eukaryotes. NADP-dependent
m-THF DH in mammals, birds and yeast are components of
a trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, mono-functional DH, as well as
bifunctional DH/cyclodrolase are found. In addition,
yeast (S. cerevisiae) also express a monofunctional DH.
M-THF DH, like other amino acid DH-like NAD(P)-binding
domains, is a member of the Rossmann fold superfamily
which includes glutamate, leucine, and phenylalanine
DHs, m-THF DH, methylene-tetrahydromethanopterin DH,
m-THF DH/cyclohydrolase, Shikimate DH-like proteins,
malate oxidoreductases, and glutamyl tRNA reductase.
Amino acid DHs catalyze the deamination of amino acids
to keto acids with NAD(P)+ as a cofactor. The
NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der
Waals contacts.
Length = 140
Score = 26.7 bits (59), Expect = 5.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 9 NSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIAC 48
++ V LD + LV G S +G L R GA V +C
Sbjct: 19 LNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSC 58
>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases.
yhfp putative quinone oxidoreductases (QOR). QOR
catalyzes the conversion of a quinone + NAD(P)H to a
hydroquinone + NAD(P)+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR
actin the respiratory chains of bacteria and
mitochondria, while soluble QOR acts to protect from
toxic quinones (e.g. DT-diaphorase) or as a soluble
eye-lens protein in some vertebrates (e.g.
zeta-crystalin). QOR reduces quinones through a
semi-quinone intermediate via a NAD(P)H-dependent single
electron transfer. QOR is a member of the medium chain
dehydrogenase/reductase family, but lacks the
zinc-binding sites of the prototypical alcohol
dehydrogenases of this group. NAD(P)(H)-dependent
oxidoreductases are the major enzymes in the
interconversion of alcohols and aldehydes, or ketones.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. A GxGxxG motif
after the first mononucleotide contact half allows the
close contact of the coenzyme with the ADH backbone.
The N-terminal catalytic domain has a distant homology
to GroES. These proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and have 2 tightly bound zinc atoms per
subunit, a catalytic zinc at the active site, and a
structural zinc in a lobe of the catalytic domain.
NAD(H) binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. In human ADH
catalysis, the zinc ion helps coordinate the alcohol,
followed by deprotonation of a histidine, the ribose of
NAD, a serine, then the alcohol, which allows the
transfer of a hydride to NAD+, creating NADH and a
zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 326
Score = 26.9 bits (60), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 22 LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLK 59
LVTG++ G+G LA+ G V+A + LK
Sbjct: 151 LVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLK 188
>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde
dehydrogenase related proteins, child 1. Members
identified as glutathione-dependent formaldehyde
dehydrogenase(FDH), a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. FDH converts formaldehyde and NAD(P) to formate
and NAD(P)H. The initial step in this process the
spontaneous formation of a S-(hydroxymethyl)glutathione
adduct from formaldehyde and glutathione, followed by
FDH-mediated oxidation (and detoxification) of the
adduct to S-formylglutathione. MDH family uses NAD(H)
as a cofactor in the interconversion of alcohols and
aldehydes, or ketones. Like many zinc-dependent alcohol
dehydrogenases (ADH) of the medium chain alcohol
dehydrogenase/reductase family (MDR), these FDHs form
dimers, with 4 zinc ions per dimer. The medium chain
alcohol dehydrogenase family (MDR) has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 386
Score = 26.3 bits (59), Expect = 7.5
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 190 ALRVINIDPGPTRTSMRAKAMPAE--DPNTVPHPQKVAKI 227
A RVI ID P R M + AE + V V +
Sbjct: 209 AERVIAIDRVPERLEMARSHLGAETINFEEVDDV--VEAL 246
>gnl|CDD|32077 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 26.4 bits (58), Expect = 7.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 29 GIGYYTALELARSGAYVIACGRSISQLEKLKN 60
IG LA++G V RS +LE LK
Sbjct: 10 AIGSLLGARLAKAGHDVTLLVRS-RRLEALKK 40
>gnl|CDD|30463 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 26.3 bits (58), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 8 NNSEIHVNLDNRLALVTGSSRGIGYYTALELAR 40
N I L+ L LVT + IGY A ++A+
Sbjct: 393 NEERIKELLERSLMLVTALNPHIGYDKAAKIAK 425
>gnl|CDD|153332 cd07648, F-BAR_FCHO, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization. Proteins in
this group have been named FCH domain Only (FCHO)
proteins. Vertebrates have two members, FCHO1 and FCHO2.
These proteins contain an F-BAR domain and a C-terminal
domain of unknown function named SAFF which is also
present in endophilin interacting protein 1. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 261
Score = 26.2 bits (58), Expect = 9.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 76 LRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQI 115
LR+ +E +TY +K KL +N+ LG+ +P+W +
Sbjct: 28 LRERATIE--ETY-SKALNKLAKQASNSSQLGTFAPLWLV 64
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 26.3 bits (59), Expect = 9.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 8 NNSEIHVNLDNRLALVTGSSRGIGYYTALELAR 40
N I L+ L LVT + IGY A ++A+
Sbjct: 390 NRERIAELLERSLMLVTALNPHIGYDKAAKIAK 422
>gnl|CDD|31285 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 25.9 bits (57), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 168 YSASKAAIEALARTW 182
YSASKAA + L R +
Sbjct: 152 YSASKAASDLLVRAY 166
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.132 0.394
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,999,469
Number of extensions: 149685
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 61
Length of query: 257
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,275,709
Effective search space: 705491985
Effective search space used: 705491985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)