BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780337|ref|YP_003064750.1| oxidoreductase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (257 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780337|ref|YP_003064750.1| oxidoreductase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 257

 Score =  529 bits (1362), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MIDCESKNNSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN 60
           MIDCESKNNSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN
Sbjct: 1   MIDCESKNNSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN 60

Query: 61  ALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSF 120
           ALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSF
Sbjct: 61  ALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSF 120

Query: 121 ADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALAR 180
           ADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALAR
Sbjct: 121 ADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALAR 180

Query: 181 TWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETG 240
           TWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETG
Sbjct: 181 TWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETG 240

Query: 241 KLFSVPQNRFVNYLTPN 257
           KLFSVPQNRFVNYLTPN
Sbjct: 241 KLFSVPQNRFVNYLTPN 257


>gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 247

 Score = 68.9 bits (167), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 15  NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAF 74
           +L  + ALVTG+S  IG   A  L + GA V   G S  +LEK+      +++ + +F  
Sbjct: 3   DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFL-LFPA 61

Query: 75  DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI 134
           +  D  ++E     + +  G +DIL+ NAGI+   S   + + + + DV+SVN+ + + +
Sbjct: 62  NFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRD-SLFMRARYEDWDDVLSVNLTSAFLL 120

Query: 135 MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
            R   P + ++  GR I ++S   +        Y A+K+ +    +  ++ET    + V 
Sbjct: 121 TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180

Query: 195 NIDPGPTRTSM 205
            + PG   + M
Sbjct: 181 CVAPGFIGSDM 191


>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 267

 Score = 39.7 bits (91), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 54  QLEKLKNALQKINKKID---IFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGS-- 108
           Q E +   L+ +   +D   +   ++ D ++++L    I +RW  LD ++ +        
Sbjct: 41  QGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNE 100

Query: 109 -ISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGA 167
              P +     +F   + V+  +   I+R     +   H G  I L+ G + +  P + A
Sbjct: 101 LRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMP--HGGAMITLTYGGSMRVVPNYNA 158

Query: 168 YSASKAAIEALARTWSKETVNTALRVINIDPGPTRT 203
            + +K+A+E+  +  + +     +R+  I  GP RT
Sbjct: 159 MAPAKSALESSTKYLACDYGGMNIRINAISAGPVRT 194


>gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 25.0 bits (53), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 51  SISQLEKLKNALQKINKKIDI 71
           ++SQL K K+  QK++KKI +
Sbjct: 100 TVSQLNKFKDKAQKLHKKIGL 120


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 22.3 bits (46), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 49  GRSISQLEKLKNALQKINKKI 69
           G+S S L  +++ LQK+NK +
Sbjct: 759 GKSESYLSDIRSELQKVNKTV 779


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,293
Number of Sequences: 1233
Number of extensions: 5728
Number of successful extensions: 26
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 328,796
effective HSP length: 72
effective length of query: 185
effective length of database: 240,020
effective search space: 44403700
effective search space used: 44403700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)