BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780337|ref|YP_003064750.1| oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] (257 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780337|ref|YP_003064750.1| oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 529 bits (1362), Expect = e-152, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MIDCESKNNSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN 60 MIDCESKNNSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN Sbjct: 1 MIDCESKNNSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN 60 Query: 61 ALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSF 120 ALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSF Sbjct: 61 ALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSF 120 Query: 121 ADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALAR 180 ADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALAR Sbjct: 121 ADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALAR 180 Query: 181 TWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETG 240 TWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETG Sbjct: 181 TWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETG 240 Query: 241 KLFSVPQNRFVNYLTPN 257 KLFSVPQNRFVNYLTPN Sbjct: 241 KLFSVPQNRFVNYLTPN 257 >gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 247 Score = 68.9 bits (167), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 2/191 (1%) Query: 15 NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAF 74 +L + ALVTG+S IG A L + GA V G S +LEK+ +++ + +F Sbjct: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFL-LFPA 61 Query: 75 DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI 134 + D ++E + + G +DIL+ NAGI+ S + + + + DV+SVN+ + + + Sbjct: 62 NFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRD-SLFMRARYEDWDDVLSVNLTSAFLL 120 Query: 135 MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194 R P + ++ GR I ++S + Y A+K+ + + ++ET + V Sbjct: 121 TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180 Query: 195 NIDPGPTRTSM 205 + PG + M Sbjct: 181 CVAPGFIGSDM 191 >gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 267 Score = 39.7 bits (91), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 54 QLEKLKNALQKINKKID---IFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGS-- 108 Q E + L+ + +D + ++ D ++++L I +RW LD ++ + Sbjct: 41 QGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNE 100 Query: 109 -ISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGA 167 P + +F + V+ + I+R + H G I L+ G + + P + A Sbjct: 101 LRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMP--HGGAMITLTYGGSMRVVPNYNA 158 Query: 168 YSASKAAIEALARTWSKETVNTALRVINIDPGPTRT 203 + +K+A+E+ + + + +R+ I GP RT Sbjct: 159 MAPAKSALESSTKYLACDYGGMNIRINAISAGPVRT 194 >gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 16/21 (76%) Query: 51 SISQLEKLKNALQKINKKIDI 71 ++SQL K K+ QK++KKI + Sbjct: 100 TVSQLNKFKDKAQKLHKKIGL 120 >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 49 GRSISQLEKLKNALQKINKKI 69 G+S S L +++ LQK+NK + Sbjct: 759 GKSESYLSDIRSELQKVNKTV 779 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.132 0.394 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,293 Number of Sequences: 1233 Number of extensions: 5728 Number of successful extensions: 26 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 6 length of query: 257 length of database: 328,796 effective HSP length: 72 effective length of query: 185 effective length of database: 240,020 effective search space: 44403700 effective search space used: 44403700 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)