HHsearch alignment for GI: 254780338 and conserved domain: pfam02600
>pfam02600 DsbB Disulfide bond formation protein DsbB. This family consists of disulfide bond formation protein DsbB from bacteria. The DsbB protein oxidizes the periplasmic protein DsbA which in turn oxidizes cysteines in other periplasmic proteins in order to make disulfide bonds. DsbB acts as a redox potential transducer across the cytoplasmic membrane and is an integral membrane protein. DsbB posses six cysteines four of which are necessary for it proper function in vivo.
Probab=96.31 E-value=0.03 Score=34.46 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCC-----------------------------HHHHHHHH
Q ss_conf 99508867889999999999999999999986047899--854-----------------------------56752257
Q gi|254780338|r 9 NLISGIKQRHYSIMILGAITTCIIATRQVLIHILPGDL--GYS-----------------------------IPVFGMHL 57 (129)
Q Consensus 9 Nlr~G~r~~hyg~~il~A~~G~~~s~RQi~lHi~pg~~--GyG-----------------------------~~i~GlH~ 57 (129)
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~G~~~a~~h~~le~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~lGlSm 139 (159)
T pfam02600 60 AGRRGRRRLALLLALLLALAGAGIALYHVGLQAGPWEGPPSCGALEGFPDWLPLDEWLPQVFAATGDCAEVAWTFLGLSM 139 (159)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCH
T ss_conf 33204899999999999999999999999998287578998888644455378999999866899985753457658489
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780338|r 58 YTWSLIFSLVIILFIS 73 (129)
Q Consensus 58 YTWA~i~f~~~i~~~a 73 (129)
T Consensus 140 a~wn~i~f~~l~i~~~ 155 (159)
T pfam02600 140 PGWSLVAFLLLALLLL 155 (159)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999