Query gi|254780338|ref|YP_003064751.1| hypothetical protein CLIBASIA_01115 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 100 out of 102 Neff 5.1 Searched_HMMs 33803 Date Wed Jun 1 12:05:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780338.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2zuq_A Disulfide bond formati 98.4 1.1E-08 3.1E-13 74.4 -3.1 115 2-116 54-171 (176) 2 >1ifk_A Inovirus; helical viru 20.7 55 0.0016 13.7 2.4 19 54-72 21-40 (51) 3 >2gtt_A Nucleoprotein; protein 19.9 47 0.0014 14.1 1.3 14 115-128 7-20 (40) 4 >1ecf_A Glutamine phosphoribos 19.2 33 0.00098 15.1 0.4 15 112-126 118-135 (141) 5 >2db7_A Hairy/enhancer-OF-spli 16.4 40 0.0012 14.6 0.3 31 99-129 23-53 (64) 6 >1dec_A Decorsin; blood coagul 14.7 54 0.0016 13.8 0.6 14 112-125 21-37 (39) 7 >1ff9_A Saccharopine reductase 14.2 52 0.0015 13.9 0.4 16 112-127 29-47 (187) 8 >2axq_A Saccharopine dehydroge 11.1 74 0.0022 12.9 0.4 16 112-127 29-47 (170) 9 >3k3f_A UREA transporter; memb 10.9 1E+02 0.003 12.1 5.3 10 46-55 81-90 (161) 10 >1lf6_A Glucoamylase; (alpha/a 10.7 45 0.0013 14.2 -0.8 18 1-18 45-62 (76) No 1 >>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A 2k74_A* (A:) Probab=98.39 E-value=1.1e-08 Score=74.44 Aligned_cols=115 Identities=5% Similarity=-0.047 Sum_probs=84.4 Q ss_pred HHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 379999999---50886788999999999999999999998604789985456752257999999999999999999960 Q gi|254780338|r 2 IGIGFLFNL---ISGIKQRHYSIMILGAITTCIIATRQVLIHILPGDLGYSIPVFGMHLYTWSLIFSLVIILFISVLMLF 78 (129) Q Consensus 2 vg~g~llNl---r~G~r~~hyg~~il~A~~G~~~s~RQi~lHi~pg~~GyG~~i~GlH~YTWA~i~f~~~i~~~av~l~~ 78 (129) ++++.++++ |++.|..++++.++.++.|..+|.||+.+|..|+++..+++..+.|.++|....+-......+..-.. T Consensus 54 ~~~~~ll~~~~~~~~~~~~~~~l~~~~a~~G~~~a~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 133 (176) T 2zuq_A 54 VLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAER 133 (176) T ss_dssp HHHHHHHHHSSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSC T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC T ss_conf 99999999981210389999999999999999999999999832355666762113433277999988830689885544 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 76633311334899999999999999999999941876 Q gi|254780338|r 79 DTAEIKVAKSPVREIAIYLFVFLIFANFISTILECGLT 116 (129) Q Consensus 79 ~~~~~~~~~~~~~~~a~~l~~~vi~~N~vstflecG~~ 116 (129) +.+-........+++.+.++.++.+.|..+.+.+||+- T Consensus 134 ~~~~lGlsm~~ws~i~f~~~~~~~~~~~~~~~~~~~~~ 171 (176) T 2zuq_A 134 QWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKAKKR 171 (176) T ss_dssp CCCSTTSCHHHHHHHHHHHHHHHHTTTTC--------- T ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 53644557999999999999999999999987533201 No 2 >>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} (A:) Probab=20.70 E-value=55 Score=13.69 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHH-HHHHH Q ss_conf 22579999999999-99999 Q gi|254780338|r 54 GMHLYTWSLIFSLV-IILFI 72 (129) Q Consensus 54 GlH~YTWA~i~f~~-~i~~~ 72 (129) ...=|+|+.++-++ .-+++ T Consensus 21 Ey~GYaW~~vv~v~gAtiGI 40 (51) T 1ifk_A 21 EMSGYAWALVVLVVGATVGI 40 (51) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHCCCHHHH T ss_conf 62232676655420123439 No 3 >>2gtt_A Nucleoprotein; protein-RNA complex, viral protein, RNA binding protein; 3.49A {Rabies virus} (A:76-115) Probab=19.86 E-value=47 Score=14.14 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=10.9 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 76889998532246 Q gi|254780338|r 115 LTQCFDNPTFYQLL 128 (129) Q Consensus 115 ~~~cpddP~~Y~ll 128 (129) -|.||+|=++|-.+ T Consensus 7 eg~cpeDWtSygil 20 (40) T 2gtt_A 7 EGTCPEDWTSYGIV 20 (40) T ss_dssp CSCCCCSSCCCSSC T ss_pred HCCCCCCCCCCCEE T ss_conf 21485654277888 No 4 >>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} (A:81-189,A:226-257) Probab=19.20 E-value=33 Score=15.09 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=9.3 Q ss_pred HCC---CCCCCCCCCCCC Q ss_conf 418---768899985322 Q gi|254780338|r 112 ECG---LTQCFDNPTFYQ 126 (129) Q Consensus 112 ecG---~~~cpddP~~Y~ 126 (129) |.| --+|.|||++-. T Consensus 118 ~~~~~~~~~~~~~~~~~~ 135 (141) T 1ecf_A 118 EEGQLFTRQCADNPVSNP 135 (141) T ss_dssp TTCCEEEEECSSSCCCCC T ss_pred CCCCEEEEECCCCCCCCC T ss_conf 899399997567887886 No 5 >>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} (A:) Probab=16.41 E-value=40 Score=14.60 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 9999999999999418768899985322469 Q gi|254780338|r 99 VFLIFANFISTILECGLTQCFDNPTFYQLLN 129 (129) Q Consensus 99 ~~vi~~N~vstflecG~~~cpddP~~Y~ll~ 129 (129) .+--++|=|+-|+..-.++-++||++=+|+| T Consensus 23 Gf~eCa~EV~RyL~~~eg~d~~~~~r~RLl~ 53 (64) T 2db7_A 23 GFRECLAEVARYLSIIEGLDASDPLRVRLVS 53 (64) T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 5999999999996058998854489999999 No 6 >>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} (A:) Probab=14.72 E-value=54 Score=13.77 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=8.5 Q ss_pred HCCCCCC--C-CCCCCC Q ss_conf 4187688--9-998532 Q gi|254780338|r 112 ECGLTQC--F-DNPTFY 125 (129) Q Consensus 112 ecG~~~c--p-ddP~~Y 125 (129) ||-||+| | +|-..| T Consensus 21 ecppgqcrfprgdadpy 37 (39) T 1dec_A 21 ECPPGQCRFPRGDADPY 37 (39) T ss_dssp EECTTCEECCSSSCCCE T ss_pred CCCCCCCCCCCCCCCCC T ss_conf 78875354667887866 No 7 >>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} (A:126-250,A:330-391) Probab=14.22 E-value=52 Score=13.88 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=9.5 Q ss_pred HCC--CC-CCCCCCCCCCC Q ss_conf 418--76-88999853224 Q gi|254780338|r 112 ECG--LT-QCFDNPTFYQL 127 (129) Q Consensus 112 ecG--~~-~cpddP~~Y~l 127 (129) =|| |- ++|+||-+|.+ T Consensus 29 ~cGGLPape~~~NPL~Ykf 47 (187) T 1ff9_A 29 YCGGLPAPESSDNPLGYKF 47 (187) T ss_dssp EEEEEECGGGCCSTTSCCC T ss_pred EECCCCCCCCCCCCCCCEE T ss_conf 7426567766788730010 No 8 >>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:146-270,A:372-407,A:459-467) Probab=11.08 E-value=74 Score=12.89 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=9.8 Q ss_pred HCCC--C-CCCCCCCCCCC Q ss_conf 4187--6-88999853224 Q gi|254780338|r 112 ECGL--T-QCFDNPTFYQL 127 (129) Q Consensus 112 ecG~--~-~cpddP~~Y~l 127 (129) =||. - ++|+||-+|.+ T Consensus 29 ~cGGLPape~~~npL~Ykf 47 (170) T 2axq_A 29 YCGGLPAPEDSDNPLGYKF 47 (170) T ss_dssp EEEEEECGGGCCSTTSCCB T ss_pred EECCCCCCCCCCCCCCEEE T ss_conf 7378667888986200440 No 9 >>3k3f_A UREA transporter; membrane protein, channel, transport protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris str} PDB: 3k3g_A (A:1-161) Probab=10.91 E-value=1e+02 Score=12.09 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=4.5 Q ss_pred CCCCHHHHHH Q ss_conf 9854567522 Q gi|254780338|r 46 LGYSIPVFGM 55 (129) Q Consensus 46 ~GyG~~i~Gl 55 (129) -||-+..-|+ T Consensus 81 ~GfN~~L~gl 90 (161) T 3k3f_A 81 FGFNGTLAGI 90 (161) T ss_dssp TTHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 1230789988 No 10 >>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} (A:487-562) Probab=10.70 E-value=45 Score=14.25 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHCCCCHHH Q ss_conf 837999999950886788 Q gi|254780338|r 1 MIGIGFLFNLISGIKQRH 18 (129) Q Consensus 1 ~vg~g~llNlr~G~r~~h 18 (129) ++.-|||-=+|||.|+.+ T Consensus 45 ivd~gFLeLVR~Gvr~a~ 62 (76) T 1lf6_A 45 IVDPSFLELVRLGVKSAD 62 (76) T ss_dssp CCCGGGGHHHHTTSSCTT T ss_pred CCCHHHHCCHHCCCCCCC T ss_conf 546666400213887999 Done!