Query         gi|254780338|ref|YP_003064751.1| hypothetical protein CLIBASIA_01115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    100 out of 102
Neff          5.1 
Searched_HMMs 33803
Date          Wed Jun  1 12:05:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780338.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2zuq_A Disulfide bond formati  98.4 1.1E-08 3.1E-13   74.4  -3.1  115    2-116    54-171 (176)
  2 >1ifk_A Inovirus; helical viru  20.7      55  0.0016   13.7   2.4   19   54-72     21-40  (51)
  3 >2gtt_A Nucleoprotein; protein  19.9      47  0.0014   14.1   1.3   14  115-128     7-20  (40)
  4 >1ecf_A Glutamine phosphoribos  19.2      33 0.00098   15.1   0.4   15  112-126   118-135 (141)
  5 >2db7_A Hairy/enhancer-OF-spli  16.4      40  0.0012   14.6   0.3   31   99-129    23-53  (64)
  6 >1dec_A Decorsin; blood coagul  14.7      54  0.0016   13.8   0.6   14  112-125    21-37  (39)
  7 >1ff9_A Saccharopine reductase  14.2      52  0.0015   13.9   0.4   16  112-127    29-47  (187)
  8 >2axq_A Saccharopine dehydroge  11.1      74  0.0022   12.9   0.4   16  112-127    29-47  (170)
  9 >3k3f_A UREA transporter; memb  10.9   1E+02   0.003   12.1   5.3   10   46-55     81-90  (161)
 10 >1lf6_A Glucoamylase; (alpha/a  10.7      45  0.0013   14.2  -0.8   18    1-18     45-62  (76)

No 1  
>>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A 2k74_A* (A:)
Probab=98.39  E-value=1.1e-08  Score=74.44  Aligned_cols=115  Identities=5%  Similarity=-0.047  Sum_probs=84.4

Q ss_pred             HHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             379999999---50886788999999999999999999998604789985456752257999999999999999999960
Q gi|254780338|r    2 IGIGFLFNL---ISGIKQRHYSIMILGAITTCIIATRQVLIHILPGDLGYSIPVFGMHLYTWSLIFSLVIILFISVLMLF   78 (129)
Q Consensus         2 vg~g~llNl---r~G~r~~hyg~~il~A~~G~~~s~RQi~lHi~pg~~GyG~~i~GlH~YTWA~i~f~~~i~~~av~l~~   78 (129)
                      ++++.++++   |++.|..++++.++.++.|..+|.||+.+|..|+++..+++..+.|.++|....+-......+..-..
T Consensus        54 ~~~~~ll~~~~~~~~~~~~~~~l~~~~a~~G~~~a~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  133 (176)
T 2zuq_A           54 VLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAER  133 (176)
T ss_dssp             HHHHHHHHHSSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             99999999981210389999999999999999999999999832355666762113433277999988830689885544


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             76633311334899999999999999999999941876
Q gi|254780338|r   79 DTAEIKVAKSPVREIAIYLFVFLIFANFISTILECGLT  116 (129)
Q Consensus        79 ~~~~~~~~~~~~~~~a~~l~~~vi~~N~vstflecG~~  116 (129)
                      +.+-........+++.+.++.++.+.|..+.+.+||+-
T Consensus       134 ~~~~lGlsm~~ws~i~f~~~~~~~~~~~~~~~~~~~~~  171 (176)
T 2zuq_A          134 QWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKAKKR  171 (176)
T ss_dssp             CCCSTTSCHHHHHHHHHHHHHHHHTTTTC---------
T ss_pred             CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             53644557999999999999999999999987533201


No 2  
>>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} (A:)
Probab=20.70  E-value=55  Score=13.69  Aligned_cols=19  Identities=32%  Similarity=0.564  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHH-HHHHH
Q ss_conf             22579999999999-99999
Q gi|254780338|r   54 GMHLYTWSLIFSLV-IILFI   72 (129)
Q Consensus        54 GlH~YTWA~i~f~~-~i~~~   72 (129)
                      ...=|+|+.++-++ .-+++
T Consensus        21 Ey~GYaW~~vv~v~gAtiGI   40 (51)
T 1ifk_A           21 EMSGYAWALVVLVVGATVGI   40 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHCCCHHHH
T ss_conf             62232676655420123439


No 3  
>>2gtt_A Nucleoprotein; protein-RNA complex, viral protein, RNA binding protein; 3.49A {Rabies virus} (A:76-115)
Probab=19.86  E-value=47  Score=14.14  Aligned_cols=14  Identities=21%  Similarity=0.354  Sum_probs=10.9

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             76889998532246
Q gi|254780338|r  115 LTQCFDNPTFYQLL  128 (129)
Q Consensus       115 ~~~cpddP~~Y~ll  128 (129)
                      -|.||+|=++|-.+
T Consensus         7 eg~cpeDWtSygil   20 (40)
T 2gtt_A            7 EGTCPEDWTSYGIV   20 (40)
T ss_dssp             CSCCCCSSCCCSSC
T ss_pred             HCCCCCCCCCCCEE
T ss_conf             21485654277888


No 4  
>>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} (A:81-189,A:226-257)
Probab=19.20  E-value=33  Score=15.09  Aligned_cols=15  Identities=47%  Similarity=0.651  Sum_probs=9.3

Q ss_pred             HCC---CCCCCCCCCCCC
Q ss_conf             418---768899985322
Q gi|254780338|r  112 ECG---LTQCFDNPTFYQ  126 (129)
Q Consensus       112 ecG---~~~cpddP~~Y~  126 (129)
                      |.|   --+|.|||++-.
T Consensus       118 ~~~~~~~~~~~~~~~~~~  135 (141)
T 1ecf_A          118 EEGQLFTRQCADNPVSNP  135 (141)
T ss_dssp             TTCCEEEEECSSSCCCCC
T ss_pred             CCCCEEEEECCCCCCCCC
T ss_conf             899399997567887886


No 5  
>>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} (A:)
Probab=16.41  E-value=40  Score=14.60  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999418768899985322469
Q gi|254780338|r   99 VFLIFANFISTILECGLTQCFDNPTFYQLLN  129 (129)
Q Consensus        99 ~~vi~~N~vstflecG~~~cpddP~~Y~ll~  129 (129)
                      .+--++|=|+-|+..-.++-++||++=+|+|
T Consensus        23 Gf~eCa~EV~RyL~~~eg~d~~~~~r~RLl~   53 (64)
T 2db7_A           23 GFRECLAEVARYLSIIEGLDASDPLRVRLVS   53 (64)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             5999999999996058998854489999999


No 6  
>>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} (A:)
Probab=14.72  E-value=54  Score=13.77  Aligned_cols=14  Identities=36%  Similarity=0.646  Sum_probs=8.5

Q ss_pred             HCCCCCC--C-CCCCCC
Q ss_conf             4187688--9-998532
Q gi|254780338|r  112 ECGLTQC--F-DNPTFY  125 (129)
Q Consensus       112 ecG~~~c--p-ddP~~Y  125 (129)
                      ||-||+|  | +|-..|
T Consensus        21 ecppgqcrfprgdadpy   37 (39)
T 1dec_A           21 ECPPGQCRFPRGDADPY   37 (39)
T ss_dssp             EECTTCEECCSSSCCCE
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             78875354667887866


No 7  
>>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} (A:126-250,A:330-391)
Probab=14.22  E-value=52  Score=13.88  Aligned_cols=16  Identities=38%  Similarity=0.700  Sum_probs=9.5

Q ss_pred             HCC--CC-CCCCCCCCCCC
Q ss_conf             418--76-88999853224
Q gi|254780338|r  112 ECG--LT-QCFDNPTFYQL  127 (129)
Q Consensus       112 ecG--~~-~cpddP~~Y~l  127 (129)
                      =||  |- ++|+||-+|.+
T Consensus        29 ~cGGLPape~~~NPL~Ykf   47 (187)
T 1ff9_A           29 YCGGLPAPESSDNPLGYKF   47 (187)
T ss_dssp             EEEEEECGGGCCSTTSCCC
T ss_pred             EECCCCCCCCCCCCCCCEE
T ss_conf             7426567766788730010


No 8  
>>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:146-270,A:372-407,A:459-467)
Probab=11.08  E-value=74  Score=12.89  Aligned_cols=16  Identities=38%  Similarity=0.588  Sum_probs=9.8

Q ss_pred             HCCC--C-CCCCCCCCCCC
Q ss_conf             4187--6-88999853224
Q gi|254780338|r  112 ECGL--T-QCFDNPTFYQL  127 (129)
Q Consensus       112 ecG~--~-~cpddP~~Y~l  127 (129)
                      =||.  - ++|+||-+|.+
T Consensus        29 ~cGGLPape~~~npL~Ykf   47 (170)
T 2axq_A           29 YCGGLPAPEDSDNPLGYKF   47 (170)
T ss_dssp             EEEEEECGGGCCSTTSCCB
T ss_pred             EECCCCCCCCCCCCCCEEE
T ss_conf             7378667888986200440


No 9  
>>3k3f_A UREA transporter; membrane protein, channel, transport protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris str} PDB: 3k3g_A (A:1-161)
Probab=10.91  E-value=1e+02  Score=12.09  Aligned_cols=10  Identities=20%  Similarity=0.627  Sum_probs=4.5

Q ss_pred             CCCCHHHHHH
Q ss_conf             9854567522
Q gi|254780338|r   46 LGYSIPVFGM   55 (129)
Q Consensus        46 ~GyG~~i~Gl   55 (129)
                      -||-+..-|+
T Consensus        81 ~GfN~~L~gl   90 (161)
T 3k3f_A           81 FGFNGTLAGI   90 (161)
T ss_dssp             TTHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             1230789988


No 10 
>>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} (A:487-562)
Probab=10.70  E-value=45  Score=14.25  Aligned_cols=18  Identities=22%  Similarity=0.331  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHCCCCHHH
Q ss_conf             837999999950886788
Q gi|254780338|r    1 MIGIGFLFNLISGIKQRH   18 (129)
Q Consensus         1 ~vg~g~llNlr~G~r~~h   18 (129)
                      ++.-|||-=+|||.|+.+
T Consensus        45 ivd~gFLeLVR~Gvr~a~   62 (76)
T 1lf6_A           45 IVDPSFLELVRLGVKSAD   62 (76)
T ss_dssp             CCCGGGGHHHHTTSSCTT
T ss_pred             CCCHHHHCCHHCCCCCCC
T ss_conf             546666400213887999


Done!