Query gi|254780338|ref|YP_003064751.1| hypothetical protein CLIBASIA_01115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 100 out of 102
Neff 5.1
Searched_HMMs 23785
Date Mon May 30 08:24:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780338.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zuq_A Disulfide bond formatio 97.0 0.00059 2.5E-08 43.8 4.5 73 17-90 72-174 (176)
2 1m56_D Cytochrome C oxidase; m 20.8 39 0.0016 13.7 3.2 19 56-74 30-48 (51)
3 2db7_A Hairy/enhancer-OF-split 18.6 23 0.00097 15.1 0.3 31 99-129 23-53 (64)
4 1qh4_A Creatine kinase; cancer 14.9 54 0.0023 12.8 2.1 27 102-128 51-84 (380)
5 1dec_A Decorsin; blood coagula 14.7 38 0.0016 13.8 0.6 14 112-125 21-37 (39)
6 3k3f_A UREA transporter; membr 11.8 66 0.0028 12.3 5.3 29 5-33 89-117 (340)
7 1qle_D Cytochrome AA3, ccytoch 11.3 68 0.0029 12.2 3.2 18 57-74 23-40 (43)
8 1e0f_I Haemadin, factor IIA; c 9.7 78 0.0033 11.8 1.2 13 112-124 31-43 (57)
9 2gl6_A Creatine kinase; non-pr 9.4 80 0.0034 11.8 2.2 27 102-128 62-95 (392)
10 1mpz_A Obtustatin; disintegrin 9.2 81 0.0034 11.7 0.9 7 116-122 34-40 (41)
No 1
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A 2k74_A*
Probab=97.03 E-value=0.00059 Score=43.83 Aligned_cols=73 Identities=12% Similarity=0.260 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH------------------------------HHHHHHHHHHHHHHHH
Q ss_conf 8899999999999999999999860478998545------------------------------6752257999999999
Q gi|254780338|r 17 RHYSIMILGAITTCIIATRQVLIHILPGDLGYSI------------------------------PVFGMHLYTWSLIFSL 66 (129)
Q Consensus 17 ~hyg~~il~A~~G~~~s~RQi~lHi~pg~~GyG~------------------------------~i~GlH~YTWA~i~f~ 66 (129)
......++.++.|...|.||+.++-.|.++.-++ .++|+++.+|+++.|.
T Consensus 72 ~~~~~~~l~~~~g~~~a~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~e~~w~~lGlSma~wnli~~~ 151 (176)
T 2zuq_A 72 VAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFI 151 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSCCCCSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999999999999817764434564224444578999988822789884530088726679999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 999999999960766333113348
Q gi|254780338|r 67 VIILFISVLMLFDTAEIKVAKSPV 90 (129)
Q Consensus 67 ~~i~~~av~l~~~~~~~~~~~~~~ 90 (129)
+ +...++..++.+..++.+++-+
T Consensus 152 ~-l~~~~~~~l~~~~~~~~~r~l~ 174 (176)
T 2zuq_A 152 A-YLIVAVLVVISQPFKAKKRDLF 174 (176)
T ss_dssp H-HHHHHTTTTC------------
T ss_pred H-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9-9999999999986334202333
No 2
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=20.76 E-value=39 Score=13.70 Aligned_cols=19 Identities=16% Similarity=0.697 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 5799999999999999999
Q gi|254780338|r 56 HLYTWSLIFSLVIILFISV 74 (129)
Q Consensus 56 H~YTWA~i~f~~~i~~~av 74 (129)
.+-||..++.++++++.|+
T Consensus 30 k~~t~~~i~ii~iLiFlAi 48 (51)
T 1m56_D 30 RMVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 3
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=18.62 E-value=23 Score=15.13 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999418768899985322469
Q gi|254780338|r 99 VFLIFANFISTILECGLTQCFDNPTFYQLLN 129 (129)
Q Consensus 99 ~~vi~~N~vstflecG~~~cpddP~~Y~ll~ 129 (129)
-+-=++|=|+-|+..-.+.-++||++-+|++
T Consensus 23 GF~ECa~EVsRyL~~~eg~d~~d~~r~RLl~ 53 (64)
T 2db7_A 23 GFRECLAEVARYLSIIEGLDASDPLRVRLVS 53 (64)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 4999999999995036888976389999999
No 4
>1qh4_A Creatine kinase; cancer, cellular energy metabolism, guanidino kinase, neurodegenerative disorders, transferase; 1.41A {Gallus gallus} SCOP: a.83.1.1 d.128.1.2 PDB: 3b6r_A* 3drb_A* 3dre_A 1g0w_A 1i0e_A 1u6r_A* 1vrp_A* 2crk_A
Probab=14.85 E-value=54 Score=12.83 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHC-------CCCCCCCCCCCCCCC
Q ss_conf 999999999941-------876889998532246
Q gi|254780338|r 102 IFANFISTILEC-------GLTQCFDNPTFYQLL 128 (129)
Q Consensus 102 i~~N~vstflec-------G~~~cpddP~~Y~ll 128 (129)
++..++++=++. |.|.++.||.+|+.|
T Consensus 51 Tl~~~I~sGv~np~s~~~~~vGi~A~D~esY~vF 84 (380)
T 1qh4_A 51 TLDDVIQTGVDNPGHPFIMTVGCVAGDEESYEVF 84 (380)
T ss_dssp CHHHHHHHHHHCCCCSSSCBCCCCCSSTTHHHHT
T ss_pred CHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 0999998524689986566503882686899999
No 5
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=14.72 E-value=38 Score=13.77 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=8.5
Q ss_pred HCCCCCC--C-CCCCCC
Q ss_conf 4187688--9-998532
Q gi|254780338|r 112 ECGLTQC--F-DNPTFY 125 (129)
Q Consensus 112 ecG~~~c--p-ddP~~Y 125 (129)
||-||+| | +|-..|
T Consensus 21 ecppgqcrfprgdadpy 37 (39)
T 1dec_A 21 ECPPGQCRFPRGDADPY 37 (39)
T ss_dssp EECTTCEECCSSSCCCE
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 78875354667887866
No 6
>3k3f_A UREA transporter; membrane protein, channel, transport protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris str} PDB: 3k3g_A
Probab=11.79 E-value=66 Score=12.28 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999950886788999999999999999
Q gi|254780338|r 5 GFLFNLISGIKQRHYSIMILGAITTCIIA 33 (129)
Q Consensus 5 g~llNlr~G~r~~hyg~~il~A~~G~~~s 33 (129)
|.++-..+...+.-+..++++++.....+
T Consensus 89 Gla~~~f~~~~~~~~~lvil~a~~s~ii~ 117 (340)
T 3k3f_A 89 GIALPFFFNYEPAMLGYVALNGAFTTIIM 117 (340)
T ss_dssp HHHHHHHBCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999973664699999999999999999
No 7
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=11.26 E-value=68 Score=12.17 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999
Q gi|254780338|r 57 LYTWSLIFSLVIILFISV 74 (129)
Q Consensus 57 ~YTWA~i~f~~~i~~~av 74 (129)
+-||..|+.++++++.|+
T Consensus 23 ~~t~~~i~~i~~liFlAi 40 (43)
T 1qle_D 23 GATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 8
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=9.67 E-value=78 Score=11.81 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=8.9
Q ss_pred HCCCCCCCCCCCC
Q ss_conf 4187688999853
Q gi|254780338|r 112 ECGLTQCFDNPTF 124 (129)
Q Consensus 112 ecG~~~cpddP~~ 124 (129)
+|--|||.+||-.
T Consensus 31 scndgqcsgdpkp 43 (57)
T 1e0f_I 31 SCNDGQCSGDPKP 43 (57)
T ss_dssp CBSSSCBCSCCCC
T ss_pred CCCCCCCCCCCCC
T ss_conf 4468721699886
No 9
>2gl6_A Creatine kinase; non-protein kinase, ADP, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP; 2.30A {Homo sapiens} PDB: 1crk_A 1qk1_A
Probab=9.40 E-value=80 Score=11.75 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHC-------CCCCCCCCCCCCCCC
Q ss_conf 999999999941-------876889998532246
Q gi|254780338|r 102 IFANFISTILEC-------GLTQCFDNPTFYQLL 128 (129)
Q Consensus 102 i~~N~vstflec-------G~~~cpddP~~Y~ll 128 (129)
++..++++=++. +.|..+.||.+|+.|
T Consensus 62 tl~~cIqsGv~np~~~~~s~vGi~AgD~esY~vF 95 (392)
T 2gl6_A 62 TLDQCIQTGVDNPGHPFIKTVGMVAGDEESYEVF 95 (392)
T ss_dssp BHHHHHHHHHHCC------CCCCCCSSTTHHHHT
T ss_pred CHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 1999998564789987665214884784899999
No 10
>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina obtusa} SCOP: g.20.1.1 PDB: 2w9w_A 2w9v_A
Probab=9.21 E-value=81 Score=11.70 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 6889998
Q gi|254780338|r 116 TQCFDNP 122 (129)
Q Consensus 116 ~~cpddP 122 (129)
..||.||
T Consensus 34 ~~CP~N~ 40 (41)
T 1mpz_A 34 CDCPLYP 40 (41)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
T ss_conf 6475885
Done!