Query gi|254780339|ref|YP_003064752.1| hypothetical protein CLIBASIA_01120 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 88
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 09:26:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780339.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9j_B Integrin beta-3; transm 12.0 55 0.0023 14.3 0.8 10 42-51 29-38 (43)
2 1wq6_A AML1-ETO; NHR2, oncopro 11.2 62 0.0026 14.0 0.9 19 42-60 21-39 (72)
3 1avy_A Fibritin, gpwac M; coil 9.1 73 0.0031 13.6 0.6 12 76-87 62-73 (74)
4 1g0u_M Proteasome component PR 6.3 1.4E+02 0.006 12.0 1.4 40 14-54 223-262 (266)
5 2ww6_A Fibritin, T4 fibritin; 5.8 1.3E+02 0.0057 12.1 0.6 11 75-85 17-27 (27)
6 1df6_A Cycloviolacin O1; cycli 5.5 1.2E+02 0.0051 12.4 0.3 10 47-56 9-18 (30)
7 2ibl_A Fibritin; foldon, trime 5.1 1.5E+02 0.0063 11.9 0.5 12 76-87 111-122 (130)
8 1nay_A CCP4, collagen-like pep 4.5 1.8E+02 0.0077 11.4 0.6 9 77-85 48-56 (56)
9 1as5_A Conotoxin Y-PIIIE; neur 4.5 1.4E+02 0.0061 12.0 0.1 5 52-56 15-19 (26)
10 2nx7_A Nematocyst outer WALL a 4.2 1.8E+02 0.0076 11.4 0.4 5 52-56 11-15 (28)
No 1
>2k9j_B Integrin beta-3; transmembrane complex, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues, disease mutation; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A
Probab=11.96 E-value=55 Score=14.27 Aligned_cols=10 Identities=40% Similarity=0.913 Sum_probs=7.5
Q ss_pred CHHHHHHHHH
Q ss_conf 1254566664
Q gi|254780339|r 42 MSWKILTTMI 51 (88)
Q Consensus 42 mswkilttmi 51 (88)
+-||+++|+-
T Consensus 29 ~iWKll~tih 38 (43)
T 2k9j_B 29 LIWKLLITIH 38 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999987665
No 2
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=11.19 E-value=62 Score=13.99 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=15.9
Q ss_pred CHHHHHHHHHCCCHHHHCC
Q ss_conf 1254566664020233303
Q gi|254780339|r 42 MSWKILTTMIGCSSAMLGT 60 (88)
Q Consensus 42 mswkilttmigcssamlgt 60 (88)
-.||-+.+|..|-..|...
T Consensus 21 eEWkh~~~mLnCI~~MVeK 39 (72)
T 1wq6_A 21 EEWKHLDHLLNCIMDMVEK 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999899999999999999
No 3
>1avy_A Fibritin, gpwac M; coiled coil, bacteriophage T4, structural protein, chaperone, bacteriophage assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=9.13 E-value=73 Score=13.59 Aligned_cols=12 Identities=58% Similarity=0.819 Sum_probs=10.0
Q ss_pred CEEEEEECCCCC
Q ss_conf 005787113344
Q gi|254780339|r 76 QNWFLLSTNLSE 87 (88)
Q Consensus 76 qnwfllstnlse 87 (88)
-.|.||||-||.
T Consensus 62 GeWVlLsTflsp 73 (74)
T 1avy_A 62 GEWVLLSTFLSP 73 (74)
T ss_dssp TEEEEGGGGSSC
T ss_pred CCEEEEEECCCC
T ss_conf 828986613468
No 4
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M*
Probab=6.30 E-value=1.4e+02 Score=11.99 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=27.1
Q ss_pred HCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 20481377444312667616730210321254566664020
Q gi|254780339|r 14 ITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCS 54 (88)
Q Consensus 14 itnnrveianiradmsgtsmkiqseinnmswkilttmigcs 54 (88)
.+.+.++|+-|..|. |..+.-+.++.++.|++--.+-|-.
T Consensus 223 ~sg~~i~i~vI~kd~-g~~~~~~~~v~~~~~~~a~~~~g~~ 262 (266)
T 1g0u_M 223 RSSRNFSLAIIDKNT-GLTFKKNLQVENMKWDFAKDIKGYG 262 (266)
T ss_dssp TCCSEEEEEEEETTT-EEEEEEEEECCCCCCGGGGGCCSSS
T ss_pred CCCCCEEEEEEECCC-CEEECCCEECHHHHHHHHCCCCCCC
T ss_conf 689967999996999-8899983050123466760063767
No 5
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=5.82 E-value=1.3e+02 Score=12.13 Aligned_cols=11 Identities=55% Similarity=0.903 Sum_probs=7.5
Q ss_pred CCEEEEEECCC
Q ss_conf 10057871133
Q gi|254780339|r 75 LQNWFLLSTNL 85 (88)
Q Consensus 75 lqnwfllstnl 85 (88)
...|.||||-|
T Consensus 17 ~gewvllstfl 27 (27)
T 2ww6_A 17 FGEWVLLSTFL 27 (27)
T ss_dssp TTEEEEGGGGC
T ss_pred CCCEEEEEECC
T ss_conf 78289986429
No 6
>1df6_A Cycloviolacin O1; cyclic cystine knot, backbone cyclic, 3-10 helix, double- stranded anti- parallel beta-sheet, hairpin bends, loops; NMR {Viola odorata} SCOP: g.3.3.2
Probab=5.47 E-value=1.2e+02 Score=12.36 Aligned_cols=10 Identities=40% Similarity=1.065 Sum_probs=6.6
Q ss_pred HHHHHCCCHH
Q ss_conf 6666402023
Q gi|254780339|r 47 LTTMIGCSSA 56 (88)
Q Consensus 47 lttmigcssa 56 (88)
.|.|+|||-.
T Consensus 9 vtal~gcscs 18 (30)
T 1df6_A 9 VTALLGCSCS 18 (30)
T ss_dssp SSGGGTCEEE
T ss_pred EEEEECCCCC
T ss_conf 1035536646
No 7
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, helper molecule, chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Probab=5.11 E-value=1.5e+02 Score=11.87 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=8.8
Q ss_pred CEEEEEECCCCC
Q ss_conf 005787113344
Q gi|254780339|r 76 QNWFLLSTNLSE 87 (88)
Q Consensus 76 qnwfllstnlse 87 (88)
-.|.||||-|+.
T Consensus 111 g~wv~l~tfl~~ 122 (130)
T 2ibl_A 111 GEWVLLSTFLGS 122 (130)
T ss_dssp TEEEEGGGGC--
T ss_pred CCEEEEEECCCC
T ss_conf 818986500266
No 8
>1nay_A CCP4, collagen-like peptide; collagen assembly, structural protein; 2.60A {Synthetic} SCOP: k.3.1.1
Probab=4.53 E-value=1.8e+02 Score=11.39 Aligned_cols=9 Identities=67% Similarity=1.066 Sum_probs=0.0
Q ss_pred EEEEEECCC
Q ss_conf 057871133
Q gi|254780339|r 77 NWFLLSTNL 85 (88)
Q Consensus 77 nwfllstnl 85 (88)
.|.||||-|
T Consensus 48 ewvllstfl 56 (56)
T 1nay_A 48 EWVLLSTFL 56 (56)
T ss_dssp EEEEGGGTC
T ss_pred CEEEEEECC
T ss_conf 489876429
No 9
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=4.50 E-value=1.4e+02 Score=11.96 Aligned_cols=5 Identities=100% Similarity=1.657 Sum_probs=0.0
Q ss_pred CCCHH
Q ss_conf 02023
Q gi|254780339|r 52 GCSSA 56 (88)
Q Consensus 52 gcssa 56 (88)
|||||
T Consensus 15 gcssa 19 (26)
T 1as5_A 15 GCSSA 19 (26)
T ss_dssp TCTTC
T ss_pred CCCCH
T ss_conf 97706
No 10
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=4.19 E-value=1.8e+02 Score=11.41 Aligned_cols=5 Identities=100% Similarity=1.657 Sum_probs=0.0
Q ss_pred CCCHH
Q ss_conf 02023
Q gi|254780339|r 52 GCSSA 56 (88)
Q Consensus 52 gcssa 56 (88)
|||||
T Consensus 11 gcssa 15 (28)
T 2nx7_A 11 GCSSA 15 (28)
T ss_dssp TCCGG
T ss_pred CCCCC
T ss_conf 74111
Done!