BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780339|ref|YP_003064752.1| hypothetical protein
CLIBASIA_01120 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780339|ref|YP_003064752.1| hypothetical protein CLIBASIA_01120 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040016|gb|ACT56812.1| hypothetical protein CLIBASIA_01120 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 88

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MIKSTKDSNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGT 60
          MIKSTKDSNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGT
Sbjct: 1  MIKSTKDSNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGT 60

Query: 61 INQVLVLNVPTANSLQNWFLLSTNLSEC 88
          INQVLVLNVPTANSLQNWFLLSTNLSEC
Sbjct: 61 INQVLVLNVPTANSLQNWFLLSTNLSEC 88


>gi|317120703|gb|ADV02526.1| hypothetical protein SC1_gp235 [Liberibacter phage SC1]
 gi|317120807|gb|ADV02628.1| hypothetical protein SC1_gp235 [Liberibacter phage SC1]
          Length = 123

 Score = 36.7 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 8   SNLKEAITNNRVEIANIRADMSGTSMK---IQSEINNMSWKILTTMIGCS 54
           + L EAI +NR +IAN+R +++   ++   +++E+  + WKI  T IG S
Sbjct: 57  TKLMEAILDNREDIANVRIEVANVRIEVANVRTEMLGLIWKIPATAIGIS 106


>gi|166368875|ref|YP_001661148.1| hypothetical protein MAE_61340 [Microcystis aeruginosa NIES-843]
 gi|166091248|dbj|BAG05956.1| hypothetical protein MAE_61340 [Microcystis aeruginosa NIES-843]
          Length = 111

 Score = 36.7 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 4   STKDSNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGTINQ 63
           ++K   L E + N RV+IANI+ +++G    +   ++N+ +   T  +   +A++  + +
Sbjct: 46  NSKIDKLSEEVNNLRVDIANIKGELTG----VNKRLDNLEFTNRTIFVAIVAALMAGLVK 101

Query: 64  VLVLNVPT 71
           + + N+PT
Sbjct: 102 LFLPNLPT 109


>gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040875|gb|ACT57671.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 117

 Score = 36.3 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 8   SNLKEAITNNRVEIANIRADMSGTSMK---IQSEINNMSWKILTTMIGCS 54
           + L EAI +NR +IAN+R +++   ++   +++E+  + WKI  T IG S
Sbjct: 51  TKLMEAILDNREDIANVRIEVANVRIEVANVRTEMLGLIWKIPATAIGIS 100


>gi|195327548|ref|XP_002030480.1| GM24548 [Drosophila sechellia]
 gi|194119423|gb|EDW41466.1| GM24548 [Drosophila sechellia]
          Length = 636

 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 34/67 (50%)

Query: 8   SNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGTINQVLVL 67
           SN+  +I+N+    + I    +  S+K    +N +S+   ++   CSS     ++  ++ 
Sbjct: 505 SNIVTSISNSTATTSTISKGTTNNSIKTTENVNVISYSPNSSTTSCSSKATSGVSGAVIT 564

Query: 68  NVPTANS 74
           N+PT+ +
Sbjct: 565 NIPTSTT 571


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.124    0.344 

Lambda     K      H
   0.267   0.0388    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,560,079
Number of Sequences: 14124377
Number of extensions: 15379465
Number of successful extensions: 59034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 59030
Number of HSP's gapped (non-prelim): 9
length of query: 88
length of database: 4,842,793,630
effective HSP length: 58
effective length of query: 30
effective length of database: 4,023,579,764
effective search space: 120707392920
effective search space used: 120707392920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.6 bits)