RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780339|ref|YP_003064752.1| hypothetical protein
CLIBASIA_01120 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>gnl|CDD|110160 pfam01137, RTC, RNA 3'-terminal phosphate cyclase.  RNA cyclases
          are a family of RNA-modifying enzymes that are
          conserved in all cellular organisms. They catalyse the
          ATP-dependent conversion of the 3'-phosphate to the
          2',3'-cyclic phosphodiester at the end of RNA, in a
          reaction involving formation of the covalent
          AMP-cyclase intermediate. The structure of RTC
          demonstrates that RTCs are comprised two domain. The
          larger domain contains an insert domain of
          approximately 100 amino acids.
          Length = 330

 Score = 24.9 bits (55), Expect = 5.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 13 AITNNRVEIANIRADMS 29
          A+T   V I NIRA+  
Sbjct: 21 ALTGKPVRIVNIRANRP 37


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0773    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 857,691
Number of extensions: 33142
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 6,263,737
Length adjustment: 57
Effective length of query: 31
Effective length of database: 5,032,024
Effective search space: 155992744
Effective search space used: 155992744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)