BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780339|ref|YP_003064752.1| hypothetical protein
CLIBASIA_01120 [Candidatus Liberibacter asiaticus str. psy62]
(88 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780339|ref|YP_003064752.1| hypothetical protein CLIBASIA_01120 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 88
Score = 174 bits (441), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MIKSTKDSNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGT 60
MIKSTKDSNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGT
Sbjct: 1 MIKSTKDSNLKEAITNNRVEIANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGT 60
Query: 61 INQVLVLNVPTANSLQNWFLLSTNLSEC 88
INQVLVLNVPTANSLQNWFLLSTNLSEC
Sbjct: 61 INQVLVLNVPTANSLQNWFLLSTNLSEC 88
>gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 117
Score = 34.7 bits (78), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 8 SNLKEAITNNRVEIANIRADMSGTSMK---IQSEINNMSWKILTTMIGCS 54
+ L EAI +NR +IAN+R +++ ++ +++E+ + WKI T IG S
Sbjct: 51 TKLMEAILDNREDIANVRIEVANVRIEVANVRTEMLGLIWKIPATAIGIS 100
>gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 232
Score = 26.2 bits (56), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 22 ANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGTINQV--LVLNVPTANSLQNWF 79
A+I + +++I + + S+ +I + G + + V N+P +N NW
Sbjct: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV 224
Query: 80 LLSTNLSE 87
L+ST L E
Sbjct: 225 LISTKLGE 232
>gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 469
Score = 22.7 bits (47), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 37 SEINNMSW-KILTTMIG--CSSAMLGTINQVLVLNVPTAN 73
S IN+++W +I+ ++ SS LG+ N+ + +VPT N
Sbjct: 217 SGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGN 256
>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 424
Score = 21.6 bits (44), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 37 SEINNMSWKILTTMIGCSSAMLG 59
SE + WKILT IG + ++G
Sbjct: 287 SEDDWHGWKILTNKIGSNCQLVG 309
>gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 171
Score = 21.2 bits (43), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 52 GCSSAMLGTI 61
GCSS MLG I
Sbjct: 95 GCSSLMLGDI 104
>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 21.2 bits (43), Expect = 3.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 44 WKILTTMIGCSSAMLGTINQVLVLNVP 70
WK LT C G+I+ V NVP
Sbjct: 521 WKDLTEGFACVVQEGGSISARRVANVP 547
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 20.4 bits (41), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 22 ANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGTINQV 64
A I DM + +Q+ + + + + LT+ I S +L INQ+
Sbjct: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
>gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 398
Score = 20.4 bits (41), Expect = 5.9, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 19 VEIANIRADMSGTSMKIQSEINNMSWKILTTMIGC 53
++I +R S +I+++ +N+S+ L IGC
Sbjct: 237 LDIQELRDVSEEDSREIEAKQHNLSYIALDGNIGC 271
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 20.0 bits (40), Expect = 7.8, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 23 NIRADMSGTSMKIQSEINNMSWKILTTMI 51
N+RA + I+ EI + +KI+ ++
Sbjct: 742 NVRASSQARVLAIKDEIKILYYKIIYDLL 770
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,517
Number of Sequences: 1233
Number of extensions: 1289
Number of successful extensions: 16
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 88
length of database: 328,796
effective HSP length: 56
effective length of query: 32
effective length of database: 259,748
effective search space: 8311936
effective search space used: 8311936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)