HHsearch alignment for GI: 254780341 and conserved domain: COG1176
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].
Probab=99.80 E-value=3.8e-17 Score=121.70 Aligned_cols=168 Identities=24% Similarity=0.392 Sum_probs=128.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCC-HHHHHH----------------H
Q ss_conf 84499999999999999788766677642101211-23202350345442012021-011000----------------0
Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFV-YLIPAL----------------V 149 (281)
Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v-~l~p~i----------------~ 149 (281)
T Consensus 63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll----~lvilPfwts~LiR~yawi~iL~~~G~iN~~L~ 138 (287)
T COG1176 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLL----LLVILPFWTSLLIRTYAWIVILGRNGLINQALL 138 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 8999999999999999999999999999999967737999999----999999989999999999999834771648899
Q ss_pred HCCCCH--------HHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 002101--------78899999988-789999958874129989999999607882010122368862679999999999
Q gi|254780341|r 150 LFGLGM--------VPGIVATIVFS-IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTI 220 (281)
Q Consensus 150 ~fG~g~--------~~~i~a~~i~~-~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~ 220 (281)
T Consensus 139 ~lGl~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVF 218 (287)
T COG1176 139 ALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVF 218 (287)
T ss_pred HCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHH
T ss_conf 76887886798805336768999986599999999999839978999998759976547642032177189999999998
Q ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHHHH-HCHHHHHHHHH
Q ss_conf 9999999999997058---804999999974-07898999999
Q gi|254780341|r 221 MLSLSMVVVTALVGSN---GLGVPVLRALNT-VDIGRGFESGL 259 (281)
Q Consensus 221 ~~~l~~vvia~~ig~~---GLG~~i~~a~~~-~~~~~~~~~~l 259 (281)
T Consensus 219 i~alG~fi~P~lLGG~~~~~ig~lI~~q~~~~~nwp~asA~sv 261 (287)
T COG1176 219 IPALGSFVTPALLGGPKVLMIGNLIYQQFLSARNWPFASALAV 261 (287)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9775889988985697525399999999852058447899999