HHsearch alignment for GI: 254780341 and conserved domain: COG1176

>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].
Probab=99.80  E-value=3.8e-17  Score=121.70  Aligned_cols=168  Identities=24%  Similarity=0.392  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCC-HHHHHH----------------H
Q ss_conf             84499999999999999788766677642101211-23202350345442012021-011000----------------0
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFV-YLIPAL----------------V  149 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v-~l~p~i----------------~  149 (281)
T Consensus        63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll----~lvilPfwts~LiR~yawi~iL~~~G~iN~~L~  138 (287)
T COG1176          63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLL----LLVILPFWTSLLIRTYAWIVILGRNGLINQALL  138 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             8999999999999999999999999999999967737999999----999999989999999999999834771648899


Q ss_pred             HCCCCH--------HHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             002101--------78899999988-789999958874129989999999607882010122368862679999999999
Q gi|254780341|r  150 LFGLGM--------VPGIVATIVFS-IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTI  220 (281)
Q Consensus       150 ~fG~g~--------~~~i~a~~i~~-~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~  220 (281)
T Consensus       139 ~lGl~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVF  218 (287)
T COG1176         139 ALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVF  218 (287)
T ss_pred             HCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHH
T ss_conf             76887886798805336768999986599999999999839978999998759976547642032177189999999998


Q ss_pred             HHHHHHHHHHHHHCCC---CHHHHHHHHHHH-HCHHHHHHHHH
Q ss_conf             9999999999997058---804999999974-07898999999
Q gi|254780341|r  221 MLSLSMVVVTALVGSN---GLGVPVLRALNT-VDIGRGFESGL  259 (281)
Q Consensus       221 ~~~l~~vvia~~ig~~---GLG~~i~~a~~~-~~~~~~~~~~l  259 (281)
T Consensus       219 i~alG~fi~P~lLGG~~~~~ig~lI~~q~~~~~nwp~asA~sv  261 (287)
T COG1176         219 IPALGSFVTPALLGGPKVLMIGNLIYQQFLSARNWPFASALAV  261 (287)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             9775889988985697525399999999852058447899999