HHsearch alignment for GI: 254780341 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.86 E-value=4.8e-20 Score=139.13 Aligned_cols=194 Identities=22% Similarity=0.315 Sum_probs=154.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHC-----CCCHHHH
Q ss_conf 1348449999999999999978876667764210121-123202350345442012021011000000-----2101788
Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLF-----GLGMVPG 158 (281)
Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f-----G~g~~~~ 158 (281)
T Consensus 59 ~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~i 138 (267)
T COG1177 59 SDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTI 138 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 78489999999999999999999999999999999704026899999997424150999999999999986887529999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 999999887899999588741299899999996078820101223688626799999999999999999999997058--
Q gi|254780341|r 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-- 236 (281)
Q Consensus 159 i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-- 236 (281)
T Consensus 139 vlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~~ 218 (267)
T COG1177 139 VLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPGF 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
T ss_conf 99999998668999999999738967999998769988889899769752799999999999999867786311328998
Q ss_pred -CHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_conf -80499999997407898999999999999----9999999987421
Q gi|254780341|r 237 -GLGVPVLRALNTVDIGRGFESGLCIVILA----IILDRLFSIPDPR 278 (281)
Q Consensus 237 -GLG~~i~~a~~~~~~~~~~~~~l~Iv~la----i~lDri~~~~~~r 278 (281)
T Consensus 219 ~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~~~~~ 265 (267)
T COG1177 219 TTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRRRARK 265 (267)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 72189999986558981999999999999999999999986433321