HHsearch alignment for GI: 254780341 and conserved domain: COG4590
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=98.81 E-value=2.2e-09 Score=74.96 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC-CCHHH
Q ss_conf 7899999588741299899999996078820101223688626799999999999999999999997-----05-88049
Q gi|254780341|r 167 IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-----GS-NGLGV 240 (281)
Q Consensus 167 ~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-----g~-~GLG~ 240 (281)
T Consensus 596 IP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiM----iG~GRAVGETMIVLMATGNtP~~~~ 671 (733)
T COG4590 596 IPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIM----IGLGRAVGETMIVLMATGNTPLLDW 671 (733)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHH----HHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf 203453422443247854466730136871454014575046841889999----7511110625899972389852122
Q ss_pred HHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999997407----------------898999999999999999999998742105
Q gi|254780341|r 241 PVLRALNTVD----------------IGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281)
Q Consensus 241 ~i~~a~~~~~----------------~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281)
T Consensus 672 nIFeGmRtlaAniAvEmPEseVgs~HyRvLFL~ALvLltFTF~vNtLAE~vRqRLR 727 (733)
T COG4590 672 NIFEGMRTLAANIAVEMPESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLR 727 (733)
T ss_pred CHHHHHHHHHHHHHHCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 28777888765521217654406633426899999999999999899999999999