HHsearch alignment for GI: 254780341 and conserved domain: PRK10417
>PRK10417 nikC nickel transporter permease NikC; Provisional.
Probab=99.70 E-value=5e-15 Score=108.94 Aligned_cols=189 Identities=22% Similarity=0.181 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999978876667764210121-1232023503454420120210110000002101788999999887899
Q gi|254780341|r 92 ETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTS 170 (281)
Q Consensus 92 ~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi 170 (281)
T Consensus 65 G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~~~~g~~~~~~il~l~l~~w~~~ 144 (272)
T PRK10417 65 GTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWY 144 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999997187612477777889862862877888886448972589999999889999
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHH
Q ss_conf 99958874129-989999999607882010122368862679999999999999999999999705------88049999
Q gi|254780341|r 171 VRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVL 243 (281)
Q Consensus 171 ~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~ 243 (281)
T Consensus 145 ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~~~i~v~~~~~~~~~Il~~a~LsFLGlG~~pp~~~WG~ml~ 224 (272)
T PRK10417 145 ARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVIPSLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMIN 224 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999999989999999983958778322017676378999999999999999999999904789999988999999
Q ss_pred HHHHHHC--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC
Q ss_conf 9997407--898999999999999----999999998742105
Q gi|254780341|r 244 RALNTVD--IGRGFESGLCIVILA----IILDRLFSIPDPRDR 280 (281)
Q Consensus 244 ~a~~~~~--~~~~~~~~l~Iv~la----i~lDri~~~~~~r~~ 280 (281)
T Consensus 225 ~~~~~l~~~pw~~~~P~~~i~l~vl~~nllgd~Lrd~ldP~l~ 267 (272)
T PRK10417 225 DARQFIWTQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHLV 267 (272)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999784999999999999999999999999996096645