HHsearch alignment for GI: 254780341 and conserved domain: PRK11365
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional.
Probab=100.00 E-value=1.4e-45 Score=292.75 Aligned_cols=196 Identities=17% Similarity=0.200 Sum_probs=189.9
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 21348449999999999999978876667764210121123202350345442012021011000000210178899999
Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATI 163 (281)
Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~ 163 (281)
T Consensus 53 ~~~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g~~~~i~~i~ 132 (263)
T PRK11365 53 SASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVA 132 (263)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 54845999999999999999999999999999999986999987585999997657999999999997157420447886
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf 9887899999588741299899999996078820101223688626799999999999999999999997058-804999
Q gi|254780341|r 164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPV 242 (281)
Q Consensus 164 i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i 242 (281)
T Consensus 133 ~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~GLG~~i 212 (263)
T PRK11365 133 LGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLA 212 (263)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 51042889999888754999999999872999999999989800688999999999999999999999984469888999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999740789899999999999999999999874210
Q gi|254780341|r 243 LRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281)
Q Consensus 243 ~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281)
T Consensus 213 ~~a~~~~~~~~v~a~ii~i~llg~~l~~~~~~lerrl 249 (263)
T PRK11365 213 MNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLW 249 (263)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999870688999999999999999999999999993