HHsearch alignment for GI: 254780341 and conserved domain: TIGR00974

>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.83  E-value=5.4e-20  Score=138.84  Aligned_cols=194  Identities=23%  Similarity=0.348  Sum_probs=148.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHCCCHHHHHHHHCCCCCHHHHHH----------HHCCC
Q ss_conf             4844999999999999997887666776421012---1123202350345442012021011000----------00021
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW---YPRFYSIIRLFLDSMQTIPTFVYLIPAL----------VLFGL  153 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~---~~~~~~~~~p~l~~~~~iP~~v~l~p~i----------~~fG~  153 (281)
T Consensus        57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~~~  136 (302)
T TIGR00974        57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGGGF  136 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             53367799999999999999999999988875530678940056878888752116999999999999977686452206


Q ss_pred             CHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf             0178899-999988789999958874129989999999607882010122368862679999999999999999------
Q gi|254780341|r  154 GMVPGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM------  226 (281)
Q Consensus       154 g~~~~i~-a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~------  226 (281)
T Consensus       137 S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl~  216 (302)
T TIGR00974       137 SALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLLF  216 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77879999999999999999989999724788889999726002113322441310368999999999999998999999


Q ss_pred             -----H-HHHH----------------HHCC-CCHHHHHHHHHHH----HCHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----9-9999----------------9705-8804999999974----0789----89999999999999999999987
Q gi|254780341|r  227 -----V-VVTA----------------LVGS-NGLGVPVLRALNT----VDIG----RGFESGLCIVILAIILDRLFSIP  275 (281)
Q Consensus       227 -----v-via~----------------~ig~-~GLG~~i~~a~~~----~~~~----~~~~~~l~Iv~lai~lDri~~~~  275 (281)
T Consensus       217 TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~~~  296 (302)
T TIGR00974       217 TAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIARLL  296 (302)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988776410356677767777754225764136888887640146788426888999999999999999999999999


Q ss_pred             HHHCC
Q ss_conf             42105
Q gi|254780341|r  276 DPRDR  280 (281)
Q Consensus       276 ~~r~~  280 (281)
T Consensus       297 ~~~~~  301 (302)
T TIGR00974       297 RRRFK  301 (302)
T ss_pred             HHHHC
T ss_conf             97524