HHsearch alignment for GI: 254780341 and conserved domain: TIGR01097

>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=99.78  E-value=5.3e-18  Score=126.87  Aligned_cols=187  Identities=21%  Similarity=0.297  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             49999999999999978876667764210121----12320235034544201202101100000021017889999998
Q gi|254780341|r   90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWY----PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF  165 (281)
Q Consensus        90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~----~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~  165 (281)
T Consensus         2 ~~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~LGP~~~~~A~~IH   81 (192)
T TIGR01097         2 LTKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSLGPIAAVLALFIH   81 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             56899999999999999999999999986752588842104789999999776799999999999950518999999999


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             87899999588741299899999996078820101223688626799999999999999999999997058804999999
Q gi|254780341|r  166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA  245 (281)
Q Consensus       166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a  245 (281)
T Consensus        82 T~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~GGIG~~L~~~  161 (192)
T TIGR01097        82 TIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAGGIGVLLRLA  161 (192)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99899999999986158989766523330378899960102676889999999998865555653044787276899998


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9740789899999999999999999999874
Q gi|254780341|r  246 LNTVDIGRGFESGLCIVILAIILDRLFSIPD  276 (281)
Q Consensus       246 ~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~  276 (281)
T Consensus       162 I~~~~~~~T~A~~~L~~~T~~~~D~lS~~LR  192 (192)
T TIGR01097       162 IRQFQEAKTLALVLLLIVTVFLLDFLSARLR  192 (192)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             6033068899999999999999999877409