HHsearch alignment for GI: 254780341 and conserved domain: TIGR03416

>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=100.00  E-value=0  Score=484.64  Aligned_cols=267  Identities=58%  Similarity=0.963  Sum_probs=263.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             06677799999999999964599999999999999999999972077689999999999998411330288887754221
Q gi|254780341|r    6 QAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLII   85 (281)
Q Consensus         6 ~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~i~   85 (281)
T Consensus         1 ~~~iP~~~wid~~vdwl~~~~~~~f~~i~~~i~~~l~~~~~~l~~~ppw~~i~~~~~l~~~~~~g~rla~~~~~~l~~i~   80 (267)
T TIGR03416         1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAFVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVALGLLLII   80 (267)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99778899999999999997799999999999999999999984276899999999999999645899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             34844999999999999997887666776421012112320235034544201202101100000021017889999998
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF  165 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~  165 (281)
T Consensus        81 ~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~~~aiia~~iy  160 (267)
T TIGR03416        81 NQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLISTVIF  160 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             87158999999999999999999999999999981699999999999874315467999999999488705699999999


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             87899999588741299899999996078820101223688626799999999999999999999997058804999999
Q gi|254780341|r  166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA  245 (281)
Q Consensus       166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a  245 (281)
T Consensus       161 a~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~GLG~~v~~~  240 (267)
T TIGR03416       161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA  240 (267)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             98899999999998567689999998399898897994184158999999999999999999999996788536999999


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             974078989999999999999999999
Q gi|254780341|r  246 LNTVDIGRGFESGLCIVILAIILDRLF  272 (281)
Q Consensus       246 ~~~~~~~~~~~~~l~Iv~lai~lDri~  272 (281)
T Consensus       241 l~~~~~g~~l~~gi~iv~lAiilDRlf  267 (267)
T TIGR03416       241 LNTVNIALGFEAGLAIVVLAIVLDRIF  267 (267)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             863356889999999999999997049