HHsearch alignment for GI: 254780341 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=100.00 E-value=0 Score=484.64 Aligned_cols=267 Identities=58% Similarity=0.963 Sum_probs=263.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 06677799999999999964599999999999999999999972077689999999999998411330288887754221
Q gi|254780341|r 6 QAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLII 85 (281)
Q Consensus 6 ~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~i~ 85 (281)
T Consensus 1 ~~~iP~~~wid~~vdwl~~~~~~~f~~i~~~i~~~l~~~~~~l~~~ppw~~i~~~~~l~~~~~~g~rla~~~~~~l~~i~ 80 (267)
T TIGR03416 1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAFVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVALGLLLII 80 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99778899999999999997799999999999999999999984276899999999999999645899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 34844999999999999997887666776421012112320235034544201202101100000021017889999998
Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF 165 (281)
Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~ 165 (281)
T Consensus 81 ~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~~~aiia~~iy 160 (267)
T TIGR03416 81 NQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLISTVIF 160 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 87158999999999999999999999999999981699999999999874315467999999999488705699999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 87899999588741299899999996078820101223688626799999999999999999999997058804999999
Q gi|254780341|r 166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA 245 (281)
Q Consensus 166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a 245 (281)
T Consensus 161 a~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~GLG~~v~~~ 240 (267)
T TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240 (267)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98899999999998567689999998399898897994184158999999999999999999999996788536999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 974078989999999999999999999
Q gi|254780341|r 246 LNTVDIGRGFESGLCIVILAIILDRLF 272 (281)
Q Consensus 246 ~~~~~~~~~~~~~l~Iv~lai~lDri~ 272 (281)
T Consensus 241 l~~~~~g~~l~~gi~iv~lAiilDRlf 267 (267)
T TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRIF 267 (267)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 863356889999999999999997049